Wall clock time and date at job start Tue Mar 31 2020 14:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29514 * 1 3 3 Si 1.86808 * 119.99818 * 2 1 4 4 H 1.48494 * 109.47013 * 274.99654 * 3 2 1 5 5 H 1.48497 * 109.47035 * 34.99780 * 3 2 1 6 6 H 1.48505 * 109.46901 * 154.99521 * 3 2 1 7 7 C 1.46549 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00189 * 149.65542 * 7 2 1 9 9 C 1.39529 * 119.99835 * 329.66156 * 7 2 1 10 10 C 1.41726 * 120.18034 * 162.96115 * 9 7 2 11 11 C 1.35817 * 119.80133 * 180.02562 * 10 9 7 12 12 C 1.40170 * 120.19032 * 0.02562 * 11 10 9 13 13 N 1.37702 * 119.80932 * 179.97438 * 12 11 10 14 14 C 1.39031 * 119.99929 * 148.14685 * 13 12 11 15 15 C 1.39285 * 119.93189 * 328.43825 * 14 13 12 16 16 C 1.37580 * 120.07165 * 180.25616 * 15 14 13 17 17 C 1.39855 * 119.92767 * 359.42217 * 16 15 14 18 18 C 1.47449 * 120.06975 * 180.29732 * 17 16 15 19 19 O 1.21510 * 119.99949 * 113.82673 * 18 17 16 20 20 O 1.34754 * 120.00265 * 293.83770 * 18 17 16 21 21 C 1.39817 * 119.86399 * 0.57571 * 17 16 15 22 22 N 1.48018 * 120.03360 * 179.74189 * 21 17 16 23 23 O 1.31702 * 119.99788 * 173.85480 * 22 21 17 24 24 O 1.31700 * 120.00273 * 353.86745 * 22 21 17 25 25 C 1.37625 * 119.92959 * 359.72577 * 21 17 16 26 26 C 1.40166 * 120.37356 * 0.25239 * 12 11 10 27 27 C 1.35808 * 120.19238 * 359.48116 * 26 12 11 28 28 H 0.97003 * 119.99913 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.10492 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.90004 * 179.97438 * 11 10 9 31 31 H 0.96996 * 120.00420 * 328.14380 * 13 12 11 32 32 H 1.08010 * 119.96262 * 359.97438 * 15 14 13 33 33 H 1.07997 * 120.03543 * 179.72536 * 16 15 14 34 34 H 0.96694 * 117.00345 * 180.02562 * 20 18 17 35 35 H 1.08002 * 119.96463 * 179.97438 * 25 21 17 36 36 H 1.08005 * 119.90371 * 179.74347 * 26 12 11 37 37 H 1.07998 * 120.10218 * 180.27483 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6178 0.0000 4 1 2.3710 2.1074 -1.3947 5 1 1.4833 2.6199 0.8030 6 1 3.5755 1.4121 0.5918 7 6 2.0280 -1.2691 -0.0006 8 1 2.9970 -1.3329 -0.4731 9 6 1.4737 -2.3950 0.6093 10 6 1.9786 -3.6861 0.3147 11 6 1.4329 -4.7768 0.9124 12 6 0.3731 -4.6283 1.8177 13 7 -0.1746 -5.7396 2.4188 14 6 -0.6936 -5.6492 3.7054 15 6 -0.1368 -4.7567 4.6183 16 6 -0.6447 -4.6688 5.8939 17 6 -1.7291 -5.4680 6.2698 18 6 -2.2801 -5.3716 7.6341 19 8 -3.4037 -4.9424 7.8065 20 8 -1.5375 -5.7591 8.6897 21 6 -2.2858 -6.3630 5.3511 22 7 -3.4299 -7.2148 5.7468 23 8 -4.0312 -7.9682 4.8494 24 8 -3.8467 -7.2191 6.9961 25 6 -1.7693 -6.4508 4.0785 26 6 -0.1360 -3.3555 2.1102 27 6 0.4016 -2.2539 1.5255 28 1 -0.4850 0.8401 0.0004 29 1 2.7942 -3.8025 -0.3835 30 1 1.8161 -5.7615 0.6888 31 1 -0.1984 -6.5854 1.9445 32 1 0.6976 -4.1363 4.3259 33 1 -0.2097 -3.9798 6.6027 34 1 -1.9417 -5.6776 9.5643 35 1 -2.1986 -7.1421 3.3686 36 1 -0.9555 -3.2502 2.8058 37 1 0.0111 -1.2736 1.7553 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388463020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:27 Heat of formation + Delta-G solvation = -9.589550 kcal Electronic energy + Delta-G solvation = -26320.766890 eV Core-core repulsion = 22225.424574 eV Total energy + Delta-G solvation = -4095.342316 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 2.24 seconds Orbital eigenvalues (eV) -40.91522 -39.62007 -38.80300 -37.63624 -36.09628 -35.47644 -34.43693 -33.68668 -31.93170 -30.82041 -29.85921 -28.87040 -26.96191 -25.02474 -23.89839 -22.78159 -21.57843 -21.31963 -20.54846 -18.66436 -18.21959 -18.14903 -17.84985 -17.30029 -16.90692 -16.11877 -16.01269 -15.75110 -15.47563 -14.73001 -14.59429 -14.29951 -14.03983 -13.61765 -13.22454 -12.93356 -12.80503 -12.34554 -12.26695 -12.00386 -11.83583 -11.70825 -11.41993 -11.38512 -11.32416 -11.09044 -10.93174 -10.76431 -10.65528 -10.36934 -10.25805 -9.78944 -9.62895 -9.38444 -8.57777 -7.90132 -7.45431 -7.00392 -4.46896 -0.76943 0.73571 1.02696 1.12689 2.09793 2.45067 2.77720 2.80916 2.83676 2.85723 2.95440 3.30332 3.54931 3.57790 4.09170 4.25903 4.74191 4.75552 4.83511 4.96330 5.22693 5.35774 5.49231 5.67637 5.84674 5.89906 5.91696 6.01951 6.22775 6.37300 6.44573 6.62093 6.66177 6.72134 6.87814 7.16720 7.24965 7.39412 7.71109 7.77399 7.78499 7.89670 8.06450 8.25482 8.46575 8.72068 9.51228 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002803 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.175675 B = 9986.798870 C =10746.744137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.729 5.729 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.252 1.252 7 C -0.444 4.444 8 H 0.088 0.912 9 C 0.105 3.895 10 C -0.232 4.232 11 C -0.081 4.081 12 C -0.052 4.052 13 N -0.634 5.634 14 C 0.238 3.762 15 C -0.126 4.126 16 C -0.032 4.032 17 C -0.127 4.127 18 C 0.539 3.461 19 O -0.487 6.487 20 O -0.508 6.508 21 C 0.078 3.922 22 N -0.021 5.021 23 O -0.164 6.164 24 O -0.162 6.162 25 C -0.135 4.135 26 C -0.096 4.096 27 C -0.182 4.182 28 H 0.295 0.705 29 H 0.095 0.905 30 H 0.090 0.910 31 H 0.401 0.599 32 H 0.157 0.843 33 H 0.151 0.849 34 H 0.414 0.586 35 H 0.157 0.843 36 H 0.088 0.912 37 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.779 -4.796 8.041 9.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.348 5.348 2 C -0.151 4.151 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.175 1.175 7 C -0.468 4.468 8 H 0.106 0.894 9 C 0.102 3.898 10 C -0.252 4.252 11 C -0.101 4.101 12 C -0.145 4.145 13 N -0.249 5.249 14 C 0.127 3.873 15 C -0.149 4.149 16 C -0.052 4.052 17 C -0.133 4.133 18 C 0.380 3.620 19 O -0.374 6.374 20 O -0.320 6.320 21 C -0.008 4.008 22 N 0.460 4.540 23 O -0.360 6.360 24 O -0.356 6.356 25 C -0.159 4.159 26 C -0.116 4.116 27 C -0.201 4.201 28 H 0.107 0.893 29 H 0.113 0.887 30 H 0.108 0.892 31 H 0.237 0.763 32 H 0.174 0.826 33 H 0.169 0.831 34 H 0.273 0.727 35 H 0.175 0.825 36 H 0.106 0.894 37 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.987 -4.052 7.380 8.651 hybrid contribution -0.519 0.181 0.340 0.646 sum 1.468 -3.871 7.721 8.761 Atomic orbital electron populations 1.69197 1.09248 1.31425 1.24919 1.27623 0.94332 1.02532 0.90640 0.86246 0.81519 0.79147 0.79755 1.18903 1.19432 1.17476 1.20725 1.03539 0.92241 1.30333 0.89418 1.17563 0.90725 0.91693 0.89851 1.20425 1.05817 0.92126 1.06853 1.19982 0.94588 0.97287 0.98224 1.16921 1.03512 0.85568 1.08498 1.41290 1.60709 1.11992 1.10859 1.17663 0.90290 0.93344 0.86000 1.21420 1.00901 1.01297 0.91280 1.20942 0.91351 0.96275 0.96660 1.18378 1.01337 1.02465 0.91088 1.20284 0.82765 0.73874 0.85059 1.90941 1.18787 1.41666 1.85972 1.84612 1.49451 1.79181 1.18743 1.19736 0.89699 0.95864 0.95549 1.50459 1.01310 0.99632 1.02629 1.96259 1.57716 1.38103 1.43880 1.96285 1.69612 1.72393 0.97360 1.20471 0.96238 1.04811 0.94404 1.20209 0.98563 0.91897 1.00908 1.20786 1.01514 0.97033 1.00785 0.89291 0.88682 0.89230 0.76311 0.82551 0.83098 0.72736 0.82506 0.89369 0.86966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.73 -16.10 11.39 55.99 0.64 -15.46 16 2 C 0.08 1.69 5.05 -15.18 -0.08 1.62 16 3 Si 0.91 15.69 29.71 -169.99 -5.05 10.64 16 4 H -0.26 -4.49 7.11 56.52 0.40 -4.09 16 5 H -0.27 -4.55 7.11 56.52 0.40 -4.15 16 6 H -0.25 -4.35 7.11 56.52 0.40 -3.95 16 7 C -0.44 -10.20 9.23 -35.75 -0.33 -10.53 16 8 H 0.09 1.93 8.05 -52.49 -0.42 1.51 16 9 C 0.10 2.42 5.66 -106.75 -0.60 1.82 16 10 C -0.23 -4.94 9.75 -39.12 -0.38 -5.33 16 11 C -0.08 -1.53 9.88 -39.72 -0.39 -1.92 16 12 C -0.05 -0.95 5.84 -83.78 -0.49 -1.44 16 13 N -0.63 -9.30 5.33 -8.29 -0.04 -9.34 16 14 C 0.24 3.31 5.82 -83.84 -0.49 2.82 16 15 C -0.13 -1.68 7.99 -39.43 -0.31 -1.99 16 16 C -0.03 -0.39 9.78 -39.22 -0.38 -0.78 16 17 C -0.13 -1.81 5.75 -104.95 -0.60 -2.41 16 18 C 0.54 7.71 5.78 34.48 0.20 7.91 16 19 O -0.49 -8.40 16.36 -26.79 -0.44 -8.84 16 20 O -0.51 -5.44 13.44 -40.64 -0.55 -5.98 16 21 C 0.08 1.19 6.89 -79.58 -0.55 0.64 16 22 N -0.02 -0.37 4.98 34.14 0.17 -0.20 16 23 O -0.16 -2.82 19.16 -31.57 -0.60 -3.42 16 24 O -0.16 -2.94 16.07 -39.34 -0.63 -3.57 16 25 C -0.14 -1.85 9.47 -39.43 -0.37 -2.22 16 26 C -0.10 -1.93 7.92 -39.73 -0.31 -2.24 16 27 C -0.18 -4.10 8.80 -39.12 -0.34 -4.45 16 28 H 0.29 5.75 8.27 -40.82 -0.34 5.42 16 29 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 30 H 0.09 1.47 8.06 -52.49 -0.42 1.04 16 31 H 0.40 4.93 8.89 -40.82 -0.36 4.56 16 32 H 0.16 2.16 6.79 -52.48 -0.36 1.80 16 33 H 0.15 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.41 2.47 9.11 45.56 0.42 2.88 16 35 H 0.16 1.93 7.58 -52.49 -0.40 1.53 16 36 H 0.09 1.69 6.80 -52.48 -0.36 1.33 16 37 H 0.11 2.62 6.11 -52.49 -0.32 2.30 16 LS Contribution 337.17 15.07 5.08 5.08 Total: -1.00 -27.87 337.17 -9.08 -36.95 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -2.20 Total: 12.67 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: -5.45 Total: -18.51 kcal Atomic # 7 Polarization: -25.77 SS G_CDS: 0.76 Total: -25.01 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: -2.22 Total: -21.82 kcal Atomic # 14 Polarization: 15.69 SS G_CDS: -5.05 Total: 10.64 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.87 -9.08 -36.95 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388463020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.357 kcal (2) G-P(sol) polarization free energy of solvation -27.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.946 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds