Wall clock time and date at job start Tue Mar 31 2020 14:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29514 * 1 3 3 Si 1.86808 * 119.99818 * 2 1 4 4 H 1.48494 * 109.47013 * 274.99654 * 3 2 1 5 5 H 1.48497 * 109.47035 * 34.99780 * 3 2 1 6 6 H 1.48505 * 109.46901 * 154.99521 * 3 2 1 7 7 C 1.46549 * 120.00318 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00189 * 149.65542 * 7 2 1 9 9 C 1.39529 * 119.99835 * 329.66156 * 7 2 1 10 10 C 1.41726 * 120.18034 * 162.96115 * 9 7 2 11 11 C 1.35817 * 119.80133 * 180.02562 * 10 9 7 12 12 C 1.40170 * 120.19032 * 0.02562 * 11 10 9 13 13 N 1.37702 * 119.80932 * 179.97438 * 12 11 10 14 14 C 1.39031 * 119.99929 * 148.14685 * 13 12 11 15 15 C 1.39285 * 119.93189 * 328.43825 * 14 13 12 16 16 C 1.37580 * 120.07165 * 180.25616 * 15 14 13 17 17 C 1.39855 * 119.92767 * 359.42217 * 16 15 14 18 18 C 1.47449 * 120.06975 * 180.29732 * 17 16 15 19 19 O 1.21510 * 119.99949 * 113.82673 * 18 17 16 20 20 O 1.34754 * 120.00265 * 293.83770 * 18 17 16 21 21 C 1.39817 * 119.86399 * 0.57571 * 17 16 15 22 22 N 1.48018 * 120.03360 * 179.74189 * 21 17 16 23 23 O 1.31702 * 119.99788 * 173.85480 * 22 21 17 24 24 O 1.31700 * 120.00273 * 353.86745 * 22 21 17 25 25 C 1.37625 * 119.92959 * 359.72577 * 21 17 16 26 26 C 1.40166 * 120.37356 * 0.25239 * 12 11 10 27 27 C 1.35808 * 120.19238 * 359.48116 * 26 12 11 28 28 H 0.97003 * 119.99913 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.10492 * 359.97438 * 10 9 7 30 30 H 1.08000 * 119.90004 * 179.97438 * 11 10 9 31 31 H 0.96996 * 120.00420 * 328.14380 * 13 12 11 32 32 H 1.08010 * 119.96262 * 359.97438 * 15 14 13 33 33 H 1.07997 * 120.03543 * 179.72536 * 16 15 14 34 34 H 0.96694 * 117.00345 * 180.02562 * 20 18 17 35 35 H 1.08002 * 119.96463 * 179.97438 * 25 21 17 36 36 H 1.08005 * 119.90371 * 179.74347 * 26 12 11 37 37 H 1.07998 * 120.10218 * 180.27483 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2951 0.0000 0.0000 3 14 2.2291 1.6178 0.0000 4 1 2.3710 2.1074 -1.3947 5 1 1.4833 2.6199 0.8030 6 1 3.5755 1.4121 0.5918 7 6 2.0280 -1.2691 -0.0006 8 1 2.9970 -1.3329 -0.4731 9 6 1.4737 -2.3950 0.6093 10 6 1.9786 -3.6861 0.3147 11 6 1.4329 -4.7768 0.9124 12 6 0.3731 -4.6283 1.8177 13 7 -0.1746 -5.7396 2.4188 14 6 -0.6936 -5.6492 3.7054 15 6 -0.1368 -4.7567 4.6183 16 6 -0.6447 -4.6688 5.8939 17 6 -1.7291 -5.4680 6.2698 18 6 -2.2801 -5.3716 7.6341 19 8 -3.4037 -4.9424 7.8065 20 8 -1.5375 -5.7591 8.6897 21 6 -2.2858 -6.3630 5.3511 22 7 -3.4299 -7.2148 5.7468 23 8 -4.0312 -7.9682 4.8494 24 8 -3.8467 -7.2191 6.9961 25 6 -1.7693 -6.4508 4.0785 26 6 -0.1360 -3.3555 2.1102 27 6 0.4016 -2.2539 1.5255 28 1 -0.4850 0.8401 0.0004 29 1 2.7942 -3.8025 -0.3835 30 1 1.8161 -5.7615 0.6888 31 1 -0.1984 -6.5854 1.9445 32 1 0.6976 -4.1363 4.3259 33 1 -0.2097 -3.9798 6.6027 34 1 -1.9417 -5.6776 9.5643 35 1 -2.1986 -7.1421 3.3686 36 1 -0.9555 -3.2502 2.8058 37 1 0.0111 -1.2736 1.7553 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000388463020.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:27 Heat of formation + Delta-G solvation = -24.218310 kcal Electronic energy + Delta-G solvation = -26321.401241 eV Core-core repulsion = 22225.424574 eV Total energy + Delta-G solvation = -4095.976667 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.07637 -40.79560 -40.12224 -39.04897 -37.15146 -36.83556 -35.76138 -35.19068 -33.09231 -32.16267 -31.44575 -30.28184 -28.22898 -26.47582 -25.12881 -23.98472 -22.87375 -22.79912 -21.95695 -19.84789 -19.54675 -19.42598 -19.24999 -18.40604 -18.23802 -17.36599 -17.28502 -17.11923 -16.79674 -15.87512 -15.84592 -15.62276 -15.31212 -14.85651 -14.60649 -14.30261 -14.03414 -13.84676 -13.68659 -13.30229 -13.15263 -12.94005 -12.83735 -12.77637 -12.62439 -12.41040 -12.28763 -12.04458 -11.93747 -11.77991 -11.71497 -11.30495 -10.96765 -10.75521 -9.96850 -9.50144 -8.98717 -8.44836 -6.10813 -2.06385 -0.39156 -0.20980 -0.05031 0.92487 1.02869 1.20913 1.37878 1.47610 1.56520 1.81373 2.11872 2.13950 2.39035 2.54132 3.17030 3.58447 3.62255 3.68747 3.71540 3.93014 4.15725 4.36232 4.40320 4.45492 4.52979 4.73633 4.85344 4.89924 4.99404 5.07512 5.22343 5.31079 5.38742 5.45924 5.60171 5.69793 5.88140 6.08376 6.18651 6.39241 6.65950 6.79964 6.83407 6.83795 7.12399 8.00229 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017794 B = 0.002803 C = 0.002605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.175675 B = 9986.798870 C =10746.744137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.766 5.766 2 C 0.047 3.953 3 Si 0.980 3.020 4 H -0.258 1.258 5 H -0.262 1.262 6 H -0.254 1.254 7 C -0.491 4.491 8 H 0.082 0.918 9 C 0.077 3.923 10 C -0.249 4.249 11 C -0.084 4.084 12 C -0.021 4.021 13 N -0.637 5.637 14 C 0.234 3.766 15 C -0.119 4.119 16 C -0.018 4.018 17 C -0.126 4.126 18 C 0.543 3.457 19 O -0.522 6.522 20 O -0.495 6.495 21 C 0.058 3.942 22 N -0.020 5.020 23 O -0.163 6.163 24 O -0.194 6.194 25 C -0.117 4.117 26 C -0.100 4.100 27 C -0.204 4.204 28 H 0.303 0.697 29 H 0.097 0.903 30 H 0.121 0.879 31 H 0.416 0.584 32 H 0.156 0.844 33 H 0.185 0.815 34 H 0.436 0.564 35 H 0.173 0.827 36 H 0.097 0.903 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.325 -5.511 9.178 10.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.180 4.180 3 Si 0.799 3.201 4 H -0.183 1.183 5 H -0.186 1.186 6 H -0.177 1.177 7 C -0.517 4.517 8 H 0.100 0.900 9 C 0.075 3.925 10 C -0.269 4.269 11 C -0.104 4.104 12 C -0.115 4.115 13 N -0.255 5.255 14 C 0.126 3.874 15 C -0.142 4.142 16 C -0.037 4.037 17 C -0.131 4.131 18 C 0.386 3.614 19 O -0.411 6.411 20 O -0.309 6.309 21 C -0.028 4.028 22 N 0.458 4.542 23 O -0.361 6.361 24 O -0.382 6.382 25 C -0.141 4.141 26 C -0.121 4.121 27 C -0.224 4.224 28 H 0.115 0.885 29 H 0.116 0.884 30 H 0.139 0.861 31 H 0.255 0.745 32 H 0.174 0.826 33 H 0.202 0.798 34 H 0.298 0.702 35 H 0.190 0.810 36 H 0.115 0.885 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 2.513 -4.809 8.621 10.186 hybrid contribution -0.752 0.143 0.180 0.787 sum 1.761 -4.666 8.800 10.115 Atomic orbital electron populations 1.69205 1.10524 1.32653 1.26187 1.28338 0.94894 1.05050 0.89703 0.85233 0.79866 0.75071 0.79897 1.18264 1.18606 1.17739 1.20898 1.04103 0.93871 1.32788 0.89973 1.17865 0.91485 0.92696 0.90475 1.20615 1.06403 0.92326 1.07526 1.20260 0.94304 0.98051 0.97791 1.16883 1.01837 0.85947 1.06842 1.41063 1.61436 1.11594 1.11414 1.17691 0.90173 0.93640 0.85935 1.21564 1.00587 1.00452 0.91603 1.21261 0.90104 0.95660 0.96711 1.18694 1.01197 1.01981 0.91274 1.20285 0.82301 0.73126 0.85722 1.90938 1.20245 1.43436 1.86511 1.84561 1.48782 1.78135 1.19472 1.19972 0.89801 0.96592 0.96473 1.50678 1.01569 0.99555 1.02430 1.96241 1.57941 1.38243 1.43718 1.96288 1.70641 1.73496 0.97744 1.20574 0.95358 1.04218 0.93941 1.20298 0.98630 0.92153 1.00981 1.20722 1.02501 0.97169 1.02022 0.88477 0.88438 0.86106 0.74548 0.82630 0.79799 0.70187 0.80962 0.88490 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -34.99 11.39 23.21 0.26 -34.73 16 2 C 0.05 2.07 5.05 87.20 0.44 2.51 16 3 Si 0.98 32.73 29.71 68.60 2.04 34.77 16 4 H -0.26 -8.28 7.11 99.48 0.71 -7.57 16 5 H -0.26 -8.29 7.11 99.48 0.71 -7.58 16 6 H -0.25 -8.45 7.11 99.48 0.71 -7.75 16 7 C -0.49 -23.61 9.23 24.75 0.23 -23.39 16 8 H 0.08 3.83 8.05 -2.91 -0.02 3.80 16 9 C 0.08 3.70 5.66 -21.24 -0.12 3.58 16 10 C -0.25 -10.65 9.75 22.57 0.22 -10.43 16 11 C -0.08 -3.04 9.88 22.18 0.22 -2.82 16 12 C -0.02 -0.72 5.84 39.16 0.23 -0.49 16 13 N -0.64 -16.71 5.33 -180.13 -0.96 -17.67 16 14 C 0.23 5.79 5.82 38.49 0.22 6.01 16 15 C -0.12 -2.80 7.99 22.37 0.18 -2.62 16 16 C -0.02 -0.37 9.78 22.51 0.22 -0.15 16 17 C -0.13 -3.25 5.75 -20.08 -0.12 -3.37 16 18 C 0.54 14.37 5.78 70.25 0.41 14.78 16 19 O -0.52 -17.37 16.36 26.99 0.44 -16.93 16 20 O -0.50 -9.20 13.44 -56.64 -0.76 -9.96 16 21 C 0.06 1.64 6.89 36.61 0.25 1.89 16 22 N -0.02 -0.66 4.98 -45.90 -0.23 -0.89 16 23 O -0.16 -5.35 19.16 3.51 0.07 -5.29 16 24 O -0.19 -6.90 16.07 10.95 0.18 -6.72 16 25 C -0.12 -2.86 9.47 22.37 0.21 -2.64 16 26 C -0.10 -3.97 7.92 22.17 0.18 -3.79 16 27 C -0.20 -9.45 8.80 22.57 0.20 -9.25 16 28 H 0.30 12.17 8.27 -92.71 -0.77 11.40 16 29 H 0.10 3.98 8.06 -2.91 -0.02 3.96 16 30 H 0.12 3.58 8.06 -2.91 -0.02 3.56 16 31 H 0.42 8.73 8.89 -92.71 -0.82 7.91 16 32 H 0.16 3.85 6.79 -2.91 -0.02 3.83 16 33 H 0.18 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.44 3.99 9.11 -74.06 -0.67 3.31 16 35 H 0.17 3.67 7.58 -2.91 -0.02 3.65 16 36 H 0.10 3.58 6.80 -2.91 -0.02 3.56 16 37 H 0.10 4.63 6.11 -2.91 -0.02 4.61 16 Total: -1.00 -61.97 337.17 3.69 -58.28 By element: Atomic # 1 Polarization: 29.62 SS G_CDS: -0.32 Total: 29.30 kcal Atomic # 6 Polarization: -33.14 SS G_CDS: 2.97 Total: -30.17 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -0.92 Total: -53.29 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -0.08 Total: -38.89 kcal Atomic # 14 Polarization: 32.73 SS G_CDS: 2.04 Total: 34.77 kcal Total: -61.97 3.69 -58.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388463020.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.063 kcal (2) G-P(sol) polarization free energy of solvation -61.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds