Wall clock time and date at job start Tue Mar 31 2020 14:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99864 * 2 1 4 4 H 1.48505 * 109.46925 * 239.99978 * 3 2 1 5 5 H 1.48501 * 109.47075 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47497 * 120.00088 * 3 2 1 7 7 C 1.37881 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99814 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47149 * 180.02562 * 9 7 2 11 11 C 1.48067 * 111.00053 * 170.00042 * 10 9 7 12 12 C 1.50752 * 112.93389 * 84.35007 * 11 10 9 13 13 C 1.54509 * 108.94075 * 92.65127 * 12 11 10 14 14 N 1.40081 * 111.51270 * 283.98708 * 13 12 11 15 15 C 1.39742 * 111.00207 * 188.14958 * 14 13 12 16 16 C 1.38920 * 120.05267 * 176.07317 * 15 14 13 17 17 C 1.38102 * 119.95971 * 180.02562 * 16 15 14 18 18 C 1.38380 * 120.07436 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 119.94294 * 179.97438 * 18 17 16 20 20 C 1.38470 * 120.11042 * 359.97438 * 18 17 16 21 21 Cl 1.73603 * 119.98345 * 180.02562 * 20 18 17 22 22 C 1.38240 * 120.03952 * 0.02562 * 20 18 17 23 23 C 1.47689 * 114.56882 * 61.45423 * 14 13 12 24 24 C 1.47738 * 110.99997 * 297.60256 * 10 9 7 25 25 H 0.96996 * 120.00368 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46874 * 60.00026 * 9 7 2 27 27 H 1.09004 * 109.46915 * 300.00767 * 9 7 2 28 28 H 1.09004 * 108.78984 * 323.46327 * 11 10 9 29 29 H 1.08994 * 108.70182 * 205.17619 * 11 10 9 30 30 H 1.09000 * 109.56058 * 332.81179 * 12 11 10 31 31 H 1.09004 * 109.55563 * 212.49046 * 12 11 10 32 32 H 1.09003 * 109.06832 * 163.46497 * 13 12 11 33 33 H 1.08999 * 109.07298 * 44.51691 * 13 12 11 34 34 H 1.07999 * 120.02474 * 0.04350 * 16 15 14 35 35 H 1.07996 * 119.96444 * 180.27927 * 17 16 15 36 36 H 1.08001 * 120.03950 * 180.02562 * 22 20 18 37 37 H 1.08994 * 109.73765 * 38.33743 * 23 14 13 38 38 H 1.08998 * 109.73996 * 159.04036 * 23 14 13 39 39 H 1.09004 * 108.99389 * 313.43522 * 24 10 9 40 40 H 1.09006 * 108.99605 * 72.26506 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5160 -4.9037 0.2395 12 6 0.9404 -5.5049 -1.0174 13 6 1.9777 -6.4712 -1.6317 14 7 3.0075 -5.7759 -2.2786 15 6 3.8368 -6.6516 -2.9844 16 6 4.8733 -6.1526 -3.7631 17 6 5.6914 -7.0198 -4.4602 18 6 5.4794 -8.3851 -4.3843 19 17 6.5094 -9.4721 -5.2626 20 6 4.4471 -8.8858 -3.6090 21 17 4.1846 -10.5993 -3.5156 22 6 3.6254 -8.0220 -2.9093 23 6 3.7982 -4.8915 -1.3989 24 6 3.0356 -3.6028 -1.2228 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 0.7080 -4.7416 0.9530 29 1 2.2286 -5.6068 0.6705 30 1 0.7131 -4.7123 -1.7302 31 1 0.0295 -6.0528 -0.7758 32 1 1.4781 -7.1190 -2.3521 33 1 2.4055 -7.0853 -0.8393 34 1 5.0395 -5.0872 -3.8232 35 1 6.5000 -6.6321 -5.0621 36 1 2.8206 -8.4125 -2.3042 37 1 3.9422 -5.3694 -0.4300 38 1 4.7661 -4.6869 -1.8566 39 1 2.3902 -3.4514 -2.0881 40 1 3.7452 -2.7777 -1.1612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411420171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:45 Heat of formation + Delta-G solvation = 35.398474 kcal Electronic energy + Delta-G solvation = -23302.518859 eV Core-core repulsion = 19783.236780 eV Total energy + Delta-G solvation = -3519.282079 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.89783 -38.61963 -36.84012 -36.72946 -35.46942 -32.82532 -32.28482 -31.09558 -30.16054 -28.17034 -26.13936 -25.39678 -23.08933 -22.62854 -21.95349 -20.65004 -19.15176 -18.26481 -16.68503 -16.37866 -16.25060 -15.67961 -15.40675 -14.81513 -14.51974 -14.24917 -14.21842 -14.01407 -13.64843 -12.89272 -12.70968 -12.55205 -12.26810 -12.10925 -12.09055 -12.07427 -11.66455 -11.40299 -11.21686 -11.14931 -10.98620 -10.96604 -10.88273 -10.54566 -10.52567 -10.38796 -9.78376 -9.61289 -9.21021 -9.18569 -8.46196 -7.95474 -7.19641 -6.05351 -4.07131 0.75562 0.85772 1.62453 2.00361 3.14327 3.31161 3.35734 3.38013 3.62685 4.36649 4.39274 4.67136 4.79377 4.86744 4.88359 4.99097 5.08860 5.22044 5.29819 5.37034 5.42951 5.48779 5.52073 5.68646 5.75469 5.81889 5.89059 5.95825 5.99864 6.17460 6.27641 6.40368 6.58852 6.64544 6.97737 7.15597 7.27220 7.35534 7.76638 8.05477 8.15141 8.51842 9.00123 9.57454 11.05430 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024380 B = 0.002629 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.194488 B =10648.583696 C =11571.902006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.510 4.510 8 H 0.062 0.938 9 C 0.197 3.803 10 N -0.544 5.544 11 C 0.053 3.947 12 C -0.148 4.148 13 C 0.062 3.938 14 N -0.495 5.495 15 C 0.147 3.853 16 C -0.128 4.128 17 C -0.071 4.071 18 C -0.067 4.067 19 Cl -0.061 7.061 20 C 0.001 3.999 21 Cl -0.055 7.055 22 C -0.163 4.163 23 C 0.063 3.937 24 C 0.069 3.931 25 H 0.262 0.738 26 H -0.009 1.009 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.055 0.945 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.037 0.963 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.146 0.854 37 H 0.063 0.937 38 H 0.085 0.915 39 H 0.045 0.955 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.400 -18.767 -8.103 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.549 4.549 8 H 0.080 0.920 9 C 0.072 3.928 10 N -0.270 5.270 11 C -0.076 4.076 12 C -0.188 4.188 13 C -0.066 4.066 14 N -0.207 5.207 15 C 0.047 3.953 16 C -0.149 4.149 17 C -0.090 4.090 18 C -0.096 4.096 19 Cl -0.032 7.032 20 C -0.027 4.027 21 Cl -0.026 7.026 22 C -0.185 4.185 23 C -0.061 4.061 24 C -0.059 4.059 25 H 0.071 0.929 26 H 0.009 0.991 27 H 0.047 0.953 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.082 0.918 38 H 0.103 0.897 39 H 0.063 0.937 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 9.327 -18.452 -8.006 22.171 hybrid contribution 0.019 0.119 -0.329 0.350 sum 9.345 -18.333 -8.336 22.202 Atomic orbital electron populations 1.69938 1.06075 1.26914 1.50862 1.24985 0.94845 0.99301 0.95404 0.86579 0.79468 0.82827 0.78639 1.20255 1.21379 1.20177 1.21134 0.93407 0.90032 1.50287 0.91994 1.19726 0.89942 0.87161 0.95970 1.62325 1.25944 1.02585 1.36101 1.21967 0.97408 0.92362 0.95860 1.22101 0.97431 0.99434 0.99816 1.21334 0.92302 0.95803 0.97161 1.56304 1.11835 1.21739 1.30840 1.19006 0.91608 0.89544 0.95102 1.20932 0.95524 1.00778 0.97688 1.20877 0.99545 0.89937 0.98645 1.20599 0.96120 0.91531 1.01354 1.98369 1.66368 1.63847 1.74596 1.20545 0.96787 0.85752 0.99643 1.98385 1.95963 1.11007 1.97249 1.21185 1.02425 0.91745 1.03141 1.22342 0.95599 0.93599 0.94525 1.21693 0.97045 0.94772 0.92373 0.92853 0.99130 0.95284 0.91520 0.92698 0.90263 0.90961 0.90637 0.94458 0.83804 0.83924 0.83665 0.91834 0.89696 0.93705 0.89870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 4 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.51 -13.85 8.62 -34.44 -0.30 -14.14 16 8 H 0.06 1.65 6.89 -52.49 -0.36 1.29 16 9 C 0.20 4.92 4.60 -4.98 -0.02 4.90 16 10 N -0.54 -10.94 4.75 -237.12 -1.13 -12.07 16 11 C 0.05 0.87 5.15 -4.31 -0.02 0.84 16 12 C -0.15 -2.13 5.64 -27.07 -0.15 -2.28 16 13 C 0.06 0.76 3.76 -6.56 -0.02 0.73 16 14 N -0.49 -6.36 4.03 -175.90 -0.71 -7.06 16 15 C 0.15 1.70 5.61 -83.77 -0.47 1.23 16 16 C -0.13 -1.32 8.88 -39.38 -0.35 -1.67 16 17 C -0.07 -0.66 9.82 -39.58 -0.39 -1.05 16 18 C -0.07 -0.70 6.32 -39.44 -0.25 -0.95 16 19 Cl -0.06 -0.60 27.95 -51.86 -1.45 -2.05 16 20 C 0.00 0.01 6.32 -39.50 -0.25 -0.24 16 21 Cl -0.06 -0.57 27.95 -51.86 -1.45 -2.02 16 22 C -0.16 -1.77 8.49 -39.35 -0.33 -2.10 16 23 C 0.06 0.85 5.21 -4.50 -0.02 0.83 16 24 C 0.07 1.23 4.59 -4.47 -0.02 1.21 16 25 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 26 H -0.01 -0.24 7.74 -51.93 -0.40 -0.65 16 27 H 0.03 0.79 7.80 -51.93 -0.40 0.38 16 28 H 0.07 1.14 7.65 -51.93 -0.40 0.74 16 29 H 0.05 0.82 6.52 -51.93 -0.34 0.48 16 30 H 0.08 1.36 6.80 -51.93 -0.35 1.01 16 31 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.84 6.87 -51.93 -0.36 0.48 16 33 H 0.04 0.43 7.05 -51.93 -0.37 0.06 16 34 H 0.14 1.34 7.33 -52.49 -0.38 0.96 16 35 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 36 H 0.15 1.45 5.87 -52.49 -0.31 1.14 16 37 H 0.06 0.88 6.77 -51.93 -0.35 0.53 16 38 H 0.08 0.99 6.33 -51.93 -0.33 0.66 16 39 H 0.04 0.87 7.02 -51.93 -0.36 0.51 16 40 H 0.08 1.56 7.04 -51.93 -0.37 1.20 16 LS Contribution 339.46 15.07 5.12 5.12 Total: -1.00 -28.61 339.46 -11.67 -40.27 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -5.06 Total: -1.59 kcal Atomic # 6 Polarization: -8.54 SS G_CDS: -2.70 Total: -11.24 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: -1.10 Total: -44.65 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -2.90 Total: -4.06 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -28.61 -11.67 -40.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411420171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.670 kcal (2) G-P(sol) polarization free energy of solvation -28.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.271 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds