Wall clock time and date at job start Tue Mar 31 2020 14:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 119.99864 * 2 1 4 4 H 1.48505 * 109.46925 * 239.99978 * 3 2 1 5 5 H 1.48501 * 109.47075 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47497 * 120.00088 * 3 2 1 7 7 C 1.37881 * 120.00495 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00152 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99814 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47149 * 180.02562 * 9 7 2 11 11 C 1.48067 * 111.00053 * 170.00042 * 10 9 7 12 12 C 1.50752 * 112.93389 * 84.35007 * 11 10 9 13 13 C 1.54509 * 108.94075 * 92.65127 * 12 11 10 14 14 N 1.40081 * 111.51270 * 283.98708 * 13 12 11 15 15 C 1.39742 * 111.00207 * 188.14958 * 14 13 12 16 16 C 1.38920 * 120.05267 * 176.07317 * 15 14 13 17 17 C 1.38102 * 119.95971 * 180.02562 * 16 15 14 18 18 C 1.38380 * 120.07436 * 0.02562 * 17 16 15 19 19 Cl 1.73602 * 119.94294 * 179.97438 * 18 17 16 20 20 C 1.38470 * 120.11042 * 359.97438 * 18 17 16 21 21 Cl 1.73603 * 119.98345 * 180.02562 * 20 18 17 22 22 C 1.38240 * 120.03952 * 0.02562 * 20 18 17 23 23 C 1.47689 * 114.56882 * 61.45423 * 14 13 12 24 24 C 1.47738 * 110.99997 * 297.60256 * 10 9 7 25 25 H 0.96996 * 120.00368 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.46874 * 60.00026 * 9 7 2 27 27 H 1.09004 * 109.46915 * 300.00767 * 9 7 2 28 28 H 1.09004 * 108.78984 * 323.46327 * 11 10 9 29 29 H 1.08994 * 108.70182 * 205.17619 * 11 10 9 30 30 H 1.09000 * 109.56058 * 332.81179 * 12 11 10 31 31 H 1.09004 * 109.55563 * 212.49046 * 12 11 10 32 32 H 1.09003 * 109.06832 * 163.46497 * 13 12 11 33 33 H 1.08999 * 109.07298 * 44.51691 * 13 12 11 34 34 H 1.07999 * 120.02474 * 0.04350 * 16 15 14 35 35 H 1.07996 * 119.96444 * 180.27927 * 17 16 15 36 36 H 1.08001 * 120.03950 * 180.02562 * 22 20 18 37 37 H 1.08994 * 109.73765 * 38.33743 * 23 14 13 38 38 H 1.08998 * 109.73996 * 159.04036 * 23 14 13 39 39 H 1.09004 * 108.99389 * 313.43522 * 24 10 9 40 40 H 1.09006 * 108.99605 * 72.26506 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 7 2.2058 -3.6157 -0.0005 11 6 1.5160 -4.9037 0.2395 12 6 0.9404 -5.5049 -1.0174 13 6 1.9777 -6.4712 -1.6317 14 7 3.0075 -5.7759 -2.2786 15 6 3.8368 -6.6516 -2.9844 16 6 4.8733 -6.1526 -3.7631 17 6 5.6914 -7.0198 -4.4602 18 6 5.4794 -8.3851 -4.3843 19 17 6.5094 -9.4721 -5.2626 20 6 4.4471 -8.8858 -3.6090 21 17 4.1846 -10.5993 -3.5156 22 6 3.6254 -8.0220 -2.9093 23 6 3.7982 -4.8915 -1.3989 24 6 3.0356 -3.6028 -1.2228 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 0.7080 -4.7416 0.9530 29 1 2.2286 -5.6068 0.6705 30 1 0.7131 -4.7123 -1.7302 31 1 0.0295 -6.0528 -0.7758 32 1 1.4781 -7.1190 -2.3521 33 1 2.4055 -7.0853 -0.8393 34 1 5.0395 -5.0872 -3.8232 35 1 6.5000 -6.6321 -5.0621 36 1 2.8206 -8.4125 -2.3042 37 1 3.9422 -5.3694 -0.4300 38 1 4.7661 -4.6869 -1.8566 39 1 2.3902 -3.4514 -2.0881 40 1 3.7452 -2.7777 -1.1612 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411420171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:44 Heat of formation + Delta-G solvation = 19.095803 kcal Electronic energy + Delta-G solvation = -23303.225796 eV Core-core repulsion = 19783.236780 eV Total energy + Delta-G solvation = -3519.989016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86189 -39.65715 -37.84773 -37.51874 -36.64617 -34.72030 -33.53117 -32.05395 -31.27376 -29.61669 -27.59104 -26.75103 -24.37354 -23.84317 -23.19459 -21.65963 -20.58508 -19.14186 -18.58994 -17.35191 -17.15860 -16.98635 -16.72010 -16.19029 -15.76659 -15.54065 -15.18264 -15.01017 -14.88559 -14.19294 -14.12248 -13.96765 -13.46247 -13.36208 -13.12243 -12.93634 -12.88529 -12.83490 -12.70423 -12.44482 -12.28675 -12.16917 -12.03754 -12.01340 -11.85385 -11.78571 -11.40548 -11.18533 -10.59126 -10.50897 -9.97470 -8.87842 -8.84591 -8.18453 -6.28680 -0.06137 0.07605 0.83487 1.21808 1.42585 1.45530 1.53161 2.31328 2.41717 2.68659 3.14013 3.28493 3.61448 3.72441 3.93374 3.98439 4.06253 4.10600 4.17992 4.30709 4.38158 4.45109 4.55644 4.63093 4.66404 4.71561 4.90190 4.93062 5.00008 5.05739 5.08197 5.11868 5.20034 5.32450 5.39103 5.43438 5.67588 5.97472 6.08964 6.22893 6.36537 6.71218 6.88591 7.41495 8.92339 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024380 B = 0.002629 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.194488 B =10648.583696 C =11571.902006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.967 3.033 4 H -0.266 1.266 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.524 4.524 8 H 0.065 0.935 9 C 0.215 3.785 10 N -0.553 5.553 11 C 0.052 3.948 12 C -0.142 4.142 13 C 0.067 3.933 14 N -0.506 5.506 15 C 0.135 3.865 16 C -0.129 4.129 17 C -0.065 4.065 18 C -0.073 4.073 19 Cl -0.057 7.057 20 C -0.009 4.009 21 Cl -0.053 7.053 22 C -0.162 4.162 23 C 0.076 3.924 24 C 0.077 3.923 25 H 0.263 0.737 26 H -0.041 1.041 27 H -0.001 1.001 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.053 0.947 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.154 0.846 37 H 0.066 0.934 38 H 0.108 0.892 39 H 0.022 0.978 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.351 -19.684 -8.706 24.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.193 1.193 7 C -0.562 4.562 8 H 0.083 0.917 9 C 0.089 3.911 10 N -0.278 5.278 11 C -0.076 4.076 12 C -0.181 4.181 13 C -0.061 4.061 14 N -0.219 5.219 15 C 0.036 3.964 16 C -0.149 4.149 17 C -0.084 4.084 18 C -0.101 4.101 19 Cl -0.028 7.028 20 C -0.037 4.037 21 Cl -0.024 7.024 22 C -0.184 4.184 23 C -0.048 4.048 24 C -0.051 4.051 25 H 0.072 0.928 26 H -0.023 1.023 27 H 0.017 0.983 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.064 0.936 31 H 0.110 0.890 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.171 0.829 35 H 0.183 0.817 36 H 0.171 0.829 37 H 0.084 0.916 38 H 0.126 0.874 39 H 0.040 0.960 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.298 -19.407 -8.619 24.053 hybrid contribution -0.583 0.312 -0.168 0.682 sum 10.715 -19.094 -8.787 23.593 Atomic orbital electron populations 1.70079 1.07803 1.27885 1.51916 1.25916 0.95691 1.03219 0.94880 0.85468 0.78176 0.77985 0.79197 1.19041 1.21147 1.19279 1.21494 0.93727 0.91126 1.49870 0.91652 1.19310 0.89951 0.88853 0.92984 1.62210 1.25182 1.02870 1.37529 1.22037 0.97580 0.91124 0.96832 1.22000 0.99116 0.99099 0.97887 1.21303 0.91693 0.95150 0.97907 1.56198 1.12241 1.22460 1.30996 1.19017 0.92177 0.89562 0.95616 1.21096 0.95138 1.01433 0.97251 1.21110 0.99705 0.89377 0.98233 1.20789 0.96047 0.92099 1.01189 1.98374 1.66182 1.63807 1.74458 1.20640 0.97094 0.85957 1.00005 1.98385 1.95973 1.10808 1.97256 1.21239 1.02541 0.91488 1.03113 1.22157 0.95796 0.91563 0.95282 1.21624 0.96106 0.97053 0.90302 0.92786 1.02324 0.98251 0.92798 0.90273 0.93613 0.88993 0.89157 0.92925 0.82909 0.81689 0.82895 0.91621 0.87380 0.95997 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.27 13.29 21.45 0.28 -55.98 16 2 C 0.00 0.05 5.46 84.66 0.46 0.51 16 3 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 4 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 5 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 7 C -0.52 -29.17 8.62 25.60 0.22 -28.95 16 8 H 0.07 3.51 6.89 -2.91 -0.02 3.49 16 9 C 0.22 11.30 4.60 85.56 0.39 11.69 16 10 N -0.55 -22.74 4.75 -904.12 -4.29 -27.03 16 11 C 0.05 1.71 5.15 85.35 0.44 2.15 16 12 C -0.14 -4.02 5.64 30.38 0.17 -3.85 16 13 C 0.07 1.52 3.76 88.05 0.33 1.85 16 14 N -0.51 -12.16 4.03 -710.42 -2.86 -15.02 16 15 C 0.14 2.80 5.61 38.19 0.21 3.02 16 16 C -0.13 -2.31 8.88 22.40 0.20 -2.11 16 17 C -0.07 -1.05 9.82 22.27 0.22 -0.83 16 18 C -0.07 -1.35 6.32 22.36 0.14 -1.21 16 19 Cl -0.06 -1.01 27.95 -2.72 -0.08 -1.09 16 20 C -0.01 -0.17 6.32 22.33 0.14 -0.03 16 21 Cl -0.05 -1.00 27.95 -2.72 -0.08 -1.07 16 22 C -0.16 -3.13 8.49 22.42 0.19 -2.94 16 23 C 0.08 1.94 5.21 85.43 0.45 2.39 16 24 C 0.08 2.76 4.59 85.42 0.39 3.15 16 25 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 26 H -0.04 -2.36 7.74 -2.39 -0.02 -2.38 16 27 H 0.00 -0.03 7.80 -2.39 -0.02 -0.05 16 28 H 0.05 1.89 7.65 -2.38 -0.02 1.87 16 29 H 0.08 2.24 6.52 -2.39 -0.02 2.22 16 30 H 0.05 1.62 6.80 -2.39 -0.02 1.61 16 31 H 0.09 2.22 8.14 -2.38 -0.02 2.21 16 32 H 0.09 1.80 6.87 -2.39 -0.02 1.79 16 33 H 0.05 1.05 7.05 -2.39 -0.02 1.04 16 34 H 0.15 2.44 7.33 -2.91 -0.02 2.42 16 35 H 0.17 1.86 8.06 -2.91 -0.02 1.83 16 36 H 0.15 2.65 5.87 -2.91 -0.02 2.63 16 37 H 0.07 1.68 6.77 -2.39 -0.02 1.66 16 38 H 0.11 2.27 6.33 -2.39 -0.02 2.26 16 39 H 0.02 0.88 7.02 -2.38 -0.02 0.86 16 40 H 0.07 2.62 7.04 -2.38 -0.02 2.60 16 Total: -1.00 -63.15 339.46 0.03 -63.12 By element: Atomic # 1 Polarization: 5.48 SS G_CDS: 1.06 Total: 6.54 kcal Atomic # 6 Polarization: -19.11 SS G_CDS: 3.96 Total: -15.15 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -6.87 Total: -98.04 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 17 Polarization: -2.01 SS G_CDS: -0.15 Total: -2.16 kcal Total: -63.15 0.03 -63.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411420171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.218 kcal (2) G-P(sol) polarization free energy of solvation -63.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds