Wall clock time and date at job start Tue Mar 31 2020 14:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29494 * 1 3 3 Si 1.86799 * 119.99878 * 2 1 4 4 H 1.48502 * 109.47092 * 269.99810 * 3 2 1 5 5 H 1.48497 * 109.47085 * 30.00034 * 3 2 1 6 6 H 1.48502 * 109.47217 * 150.00155 * 3 2 1 7 7 C 1.46586 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99853 * 175.47092 * 7 2 1 9 9 C 1.39659 * 119.99999 * 355.47381 * 7 2 1 10 10 C 1.41655 * 120.19161 * 214.42993 * 9 7 2 11 11 C 1.35927 * 119.79067 * 180.02562 * 10 9 7 12 12 C 1.39997 * 120.20310 * 0.02994 * 11 10 9 13 13 N 1.38205 * 119.80339 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99284 * 35.43846 * 13 12 11 15 15 O 1.21532 * 120.00573 * 355.78462 * 14 13 12 16 16 C 1.47802 * 119.99770 * 175.78016 * 14 13 12 17 17 C 1.39562 * 120.11833 * 0.02562 * 16 14 13 18 18 C 1.38445 * 119.79172 * 179.97438 * 17 16 14 19 19 O 1.35905 * 119.98559 * 179.97438 * 18 17 16 20 20 C 1.38864 * 120.03174 * 0.02562 * 18 17 16 21 21 C 1.38257 * 120.24207 * 359.97354 * 20 18 17 22 22 N 1.48018 * 119.89302 * 180.02562 * 21 20 18 23 23 O 1.31702 * 119.99745 * 359.97438 * 22 21 20 24 24 O 1.31697 * 120.00148 * 180.02562 * 22 21 20 25 25 C 1.37996 * 120.21076 * 0.02720 * 21 20 18 26 26 C 1.40004 * 120.39663 * 0.23063 * 12 11 10 27 27 C 1.35923 * 120.19912 * 359.47795 * 26 12 11 28 28 H 0.96994 * 120.00536 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.10591 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.89694 * 179.97438 * 11 10 9 31 31 H 0.96995 * 119.99934 * 215.43619 * 13 12 11 32 32 H 1.08004 * 120.10687 * 0.24896 * 17 16 14 33 33 H 0.96695 * 114.00192 * 90.00094 * 19 18 17 34 34 H 1.07995 * 119.88125 * 179.97438 * 20 18 17 35 35 H 1.07998 * 120.01312 * 179.97438 * 25 21 20 36 36 H 1.08004 * 119.89893 * 179.72851 * 26 12 11 37 37 H 1.08005 * 120.09888 * 180.26231 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 2.4764 2.0464 -1.4001 5 1 1.4263 2.6526 0.7000 6 1 3.5265 1.4402 0.7000 7 6 2.0279 -1.2695 0.0006 8 1 3.1054 -1.2709 -0.0733 9 6 1.3329 -2.4770 0.0966 10 6 1.8989 -3.5711 0.7960 11 6 1.2156 -4.7428 0.8839 12 6 -0.0436 -4.8704 0.2854 13 7 -0.7309 -6.0657 0.3794 14 6 -0.6444 -6.8061 1.5023 15 8 0.0972 -6.4620 2.4016 16 6 -1.4516 -8.0365 1.6402 17 6 -2.3037 -8.4343 0.6089 18 6 -3.0563 -9.5883 0.7450 19 8 -3.8878 -9.9790 -0.2565 20 6 -2.9629 -10.3462 1.9048 21 6 -2.1192 -9.9534 2.9273 22 7 -2.0252 -10.7675 4.1599 23 8 -2.7450 -11.8636 4.2816 24 8 -1.2226 -10.3950 5.1354 25 6 -1.3645 -8.8049 2.8022 26 6 -0.6083 -3.7961 -0.4125 27 6 0.0582 -2.6152 -0.5055 28 1 -0.4850 0.8399 -0.0004 29 1 2.8703 -3.4746 1.2579 30 1 1.6457 -5.5782 1.4164 31 1 -1.2755 -6.3717 -0.3626 32 1 -2.3725 -7.8461 -0.2943 33 1 -3.4731 -10.5620 -0.9070 34 1 -3.5514 -11.2458 2.0086 35 1 -0.7068 -8.5009 3.6031 36 1 -1.5783 -3.9048 -0.8750 37 1 -0.3809 -1.7861 -1.0407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427908906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:20 Heat of formation + Delta-G solvation = 6.770892 kcal Electronic energy + Delta-G solvation = -25723.362572 eV Core-core repulsion = 21628.729698 eV Total energy + Delta-G solvation = -4094.632874 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.20332 -39.72656 -39.03179 -37.52866 -36.79937 -34.73432 -34.68594 -33.35232 -32.31459 -30.80883 -29.69404 -29.11636 -27.13155 -25.61031 -23.89227 -22.92875 -21.77415 -21.03366 -20.26853 -19.27469 -18.49397 -17.85689 -17.60530 -17.38377 -16.83002 -16.72698 -16.33344 -15.71346 -15.48019 -15.30682 -14.90999 -14.35013 -14.03704 -13.40454 -13.26030 -12.87132 -12.83287 -12.64569 -12.24301 -11.86642 -11.80332 -11.63173 -11.55037 -11.42091 -11.29826 -11.17716 -10.95868 -10.84969 -10.28171 -10.12116 -9.72557 -9.65470 -9.57399 -9.37664 -9.08408 -7.66586 -7.06876 -6.90725 -4.39949 -1.08996 0.03986 0.53855 0.70469 2.16961 2.60072 2.94866 2.95574 3.02140 3.06616 3.16230 3.22033 3.44654 3.77126 3.98018 4.03598 4.19578 4.25961 4.43648 4.50914 4.79264 5.10864 5.18248 5.31269 5.41704 5.52776 5.70014 6.08840 6.34065 6.41195 6.60913 6.75989 6.79016 6.82958 7.04147 7.17850 7.53870 7.57000 7.75698 7.94535 8.09138 8.11063 8.40815 8.52397 8.68235 8.93223 9.92821 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023992 B = 0.002324 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.783257 B =12044.584649 C =12843.186664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.771 5.771 2 C 0.070 3.930 3 Si 0.922 3.078 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.463 4.463 8 H 0.082 0.918 9 C 0.107 3.893 10 C -0.223 4.223 11 C -0.068 4.068 12 C -0.036 4.036 13 N -0.626 5.626 14 C 0.534 3.466 15 O -0.514 6.514 16 C -0.097 4.097 17 C -0.063 4.063 18 C 0.111 3.889 19 O -0.482 6.482 20 C -0.069 4.069 21 C 0.007 3.993 22 N -0.020 5.020 23 O -0.167 6.167 24 O -0.153 6.153 25 C -0.007 4.007 26 C -0.104 4.104 27 C -0.163 4.163 28 H 0.287 0.713 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.393 0.607 32 H 0.156 0.844 33 H 0.401 0.599 34 H 0.165 0.835 35 H 0.173 0.827 36 H 0.089 0.911 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.912 -14.804 -3.732 16.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.154 4.154 3 Si 0.746 3.254 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.100 0.900 9 C 0.105 3.895 10 C -0.243 4.243 11 C -0.088 4.088 12 C -0.128 4.128 13 N -0.267 5.267 14 C 0.319 3.681 15 O -0.391 6.391 16 C -0.101 4.101 17 C -0.082 4.082 18 C 0.065 3.935 19 O -0.292 6.292 20 C -0.089 4.089 21 C -0.079 4.079 22 N 0.461 4.539 23 O -0.361 6.361 24 O -0.350 6.350 25 C -0.027 4.027 26 C -0.124 4.124 27 C -0.183 4.183 28 H 0.099 0.901 29 H 0.114 0.886 30 H 0.124 0.876 31 H 0.228 0.772 32 H 0.173 0.827 33 H 0.259 0.741 34 H 0.182 0.818 35 H 0.191 0.809 36 H 0.107 0.893 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.075 -13.688 -3.359 15.770 hybrid contribution 0.123 0.012 -0.182 0.220 sum -6.952 -13.676 -3.542 15.745 Atomic orbital electron populations 1.69076 1.08612 1.30114 1.31591 1.27475 0.94632 1.01840 0.91404 0.86083 0.80611 0.79257 0.79462 1.19099 1.20009 1.18142 1.20589 0.94452 0.89195 1.44879 0.90034 1.17703 0.92133 0.91973 0.87718 1.20777 1.01548 0.95180 1.06759 1.20349 0.92383 0.97628 0.98444 1.17112 0.94840 0.85775 1.15111 1.42514 1.47710 1.21238 1.15279 1.17783 0.83609 0.83378 0.83286 1.90822 1.38295 1.70081 1.39878 1.20031 0.99166 0.97092 0.93806 1.22200 0.91223 0.95519 0.99296 1.17848 0.92783 0.93572 0.89291 1.84915 1.37262 1.69884 1.37177 1.21464 0.95301 1.00718 0.91409 1.19925 1.06092 0.95735 0.86116 1.50387 0.99310 1.01374 1.02795 1.96276 1.41158 1.10204 1.88505 1.96332 1.32866 1.75394 1.30395 1.21236 0.94295 0.88971 0.98242 1.20230 0.97803 0.93031 1.01381 1.21146 0.97811 0.95792 1.03506 0.90103 0.88634 0.87650 0.77224 0.82662 0.74146 0.81754 0.80944 0.89286 0.85473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.63 10.72 55.99 0.60 -18.03 16 2 C 0.07 1.66 5.59 -15.17 -0.08 1.57 16 3 Si 0.92 17.60 29.65 -169.99 -5.04 12.56 16 4 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 5 H -0.28 -5.14 7.11 56.52 0.40 -4.74 16 6 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 7 C -0.46 -11.75 9.25 -35.69 -0.33 -12.08 16 8 H 0.08 1.99 7.94 -52.49 -0.42 1.57 16 9 C 0.11 2.76 5.59 -106.76 -0.60 2.16 16 10 C -0.22 -5.44 9.76 -39.11 -0.38 -5.83 16 11 C -0.07 -1.56 8.59 -39.75 -0.34 -1.90 16 12 C -0.04 -0.75 6.30 -83.67 -0.53 -1.28 16 13 N -0.63 -9.86 5.21 -10.59 -0.06 -9.92 16 14 C 0.53 8.47 7.59 -12.35 -0.09 8.38 16 15 O -0.51 -10.33 13.74 5.34 0.07 -10.26 16 16 C -0.10 -1.10 5.87 -104.99 -0.62 -1.72 16 17 C -0.06 -0.50 9.48 -39.01 -0.37 -0.87 16 18 C 0.11 0.79 6.70 -39.27 -0.26 0.52 16 19 O -0.48 -2.55 13.50 -19.44 -0.26 -2.82 16 20 C -0.07 -0.57 9.51 -39.34 -0.37 -0.94 16 21 C 0.01 0.08 6.88 -80.03 -0.55 -0.47 16 22 N -0.02 -0.27 4.98 33.92 0.17 -0.10 16 23 O -0.17 -2.24 19.14 -31.57 -0.60 -2.84 16 24 O -0.15 -2.26 19.14 -31.57 -0.60 -2.86 16 25 C -0.01 -0.09 9.12 -39.17 -0.36 -0.44 16 26 C -0.10 -2.24 9.89 -39.75 -0.39 -2.64 16 27 C -0.16 -3.98 8.68 -39.11 -0.34 -4.32 16 28 H 0.29 6.22 8.27 -40.82 -0.34 5.88 16 29 H 0.10 2.23 8.06 -52.49 -0.42 1.81 16 30 H 0.11 2.37 6.22 -52.49 -0.33 2.04 16 31 H 0.39 4.50 6.85 -40.82 -0.28 4.22 16 32 H 0.16 0.89 6.41 -52.48 -0.34 0.55 16 33 H 0.40 0.10 9.06 45.56 0.41 0.51 16 34 H 0.16 1.11 7.56 -52.49 -0.40 0.72 16 35 H 0.17 2.20 7.15 -52.49 -0.38 1.83 16 36 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 37 H 0.13 3.19 6.16 -52.48 -0.32 2.87 16 LS Contribution 337.94 15.07 5.09 5.09 Total: -1.00 -31.35 337.94 -8.27 -39.62 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -2.02 Total: 9.40 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -5.62 Total: -19.86 kcal Atomic # 7 Polarization: -28.76 SS G_CDS: 0.71 Total: -28.04 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -1.40 Total: -18.77 kcal Atomic # 14 Polarization: 17.60 SS G_CDS: -5.04 Total: 12.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.35 -8.27 -39.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427908906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.388 kcal (2) G-P(sol) polarization free energy of solvation -31.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds