Wall clock time and date at job start Tue Mar 31 2020 14:46:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29494 * 1 3 3 Si 1.86799 * 119.99878 * 2 1 4 4 H 1.48502 * 109.47092 * 269.99810 * 3 2 1 5 5 H 1.48497 * 109.47085 * 30.00034 * 3 2 1 6 6 H 1.48502 * 109.47217 * 150.00155 * 3 2 1 7 7 C 1.46586 * 120.00065 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99853 * 175.47092 * 7 2 1 9 9 C 1.39659 * 119.99999 * 355.47381 * 7 2 1 10 10 C 1.41655 * 120.19161 * 214.42993 * 9 7 2 11 11 C 1.35927 * 119.79067 * 180.02562 * 10 9 7 12 12 C 1.39997 * 120.20310 * 0.02994 * 11 10 9 13 13 N 1.38205 * 119.80339 * 179.97438 * 12 11 10 14 14 C 1.34779 * 119.99284 * 35.43846 * 13 12 11 15 15 O 1.21532 * 120.00573 * 355.78462 * 14 13 12 16 16 C 1.47802 * 119.99770 * 175.78016 * 14 13 12 17 17 C 1.39562 * 120.11833 * 0.02562 * 16 14 13 18 18 C 1.38445 * 119.79172 * 179.97438 * 17 16 14 19 19 O 1.35905 * 119.98559 * 179.97438 * 18 17 16 20 20 C 1.38864 * 120.03174 * 0.02562 * 18 17 16 21 21 C 1.38257 * 120.24207 * 359.97354 * 20 18 17 22 22 N 1.48018 * 119.89302 * 180.02562 * 21 20 18 23 23 O 1.31702 * 119.99745 * 359.97438 * 22 21 20 24 24 O 1.31697 * 120.00148 * 180.02562 * 22 21 20 25 25 C 1.37996 * 120.21076 * 0.02720 * 21 20 18 26 26 C 1.40004 * 120.39663 * 0.23063 * 12 11 10 27 27 C 1.35923 * 120.19912 * 359.47795 * 26 12 11 28 28 H 0.96994 * 120.00536 * 0.02562 * 1 2 3 29 29 H 1.07993 * 120.10591 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.89694 * 179.97438 * 11 10 9 31 31 H 0.96995 * 119.99934 * 215.43619 * 13 12 11 32 32 H 1.08004 * 120.10687 * 0.24896 * 17 16 14 33 33 H 0.96695 * 114.00192 * 90.00094 * 19 18 17 34 34 H 1.07995 * 119.88125 * 179.97438 * 20 18 17 35 35 H 1.07998 * 120.01312 * 179.97438 * 25 21 20 36 36 H 1.08004 * 119.89893 * 179.72851 * 26 12 11 37 37 H 1.08005 * 120.09888 * 180.26231 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2289 1.6177 0.0000 4 1 2.4764 2.0464 -1.4001 5 1 1.4263 2.6526 0.7000 6 1 3.5265 1.4402 0.7000 7 6 2.0279 -1.2695 0.0006 8 1 3.1054 -1.2709 -0.0733 9 6 1.3329 -2.4770 0.0966 10 6 1.8989 -3.5711 0.7960 11 6 1.2156 -4.7428 0.8839 12 6 -0.0436 -4.8704 0.2854 13 7 -0.7309 -6.0657 0.3794 14 6 -0.6444 -6.8061 1.5023 15 8 0.0972 -6.4620 2.4016 16 6 -1.4516 -8.0365 1.6402 17 6 -2.3037 -8.4343 0.6089 18 6 -3.0563 -9.5883 0.7450 19 8 -3.8878 -9.9790 -0.2565 20 6 -2.9629 -10.3462 1.9048 21 6 -2.1192 -9.9534 2.9273 22 7 -2.0252 -10.7675 4.1599 23 8 -2.7450 -11.8636 4.2816 24 8 -1.2226 -10.3950 5.1354 25 6 -1.3645 -8.8049 2.8022 26 6 -0.6083 -3.7961 -0.4125 27 6 0.0582 -2.6152 -0.5055 28 1 -0.4850 0.8399 -0.0004 29 1 2.8703 -3.4746 1.2579 30 1 1.6457 -5.5782 1.4164 31 1 -1.2755 -6.3717 -0.3626 32 1 -2.3725 -7.8461 -0.2943 33 1 -3.4731 -10.5620 -0.9070 34 1 -3.5514 -11.2458 2.0086 35 1 -0.7068 -8.5009 3.6031 36 1 -1.5783 -3.9048 -0.8750 37 1 -0.3809 -1.7861 -1.0407 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427908906.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:19 Heat of formation + Delta-G solvation = -14.126820 kcal Electronic energy + Delta-G solvation = -25724.268765 eV Core-core repulsion = 21628.729698 eV Total energy + Delta-G solvation = -4095.539067 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.15027 -40.97721 -39.88455 -39.01874 -37.70461 -36.27712 -35.74079 -34.97524 -33.34976 -31.56980 -31.48133 -30.81529 -28.09098 -27.04817 -25.21640 -23.68931 -23.35749 -22.60217 -21.62497 -20.36171 -19.46505 -19.42116 -18.57817 -18.47969 -17.96277 -17.63233 -17.29709 -17.11378 -16.62647 -16.40619 -16.00858 -15.73977 -15.58453 -14.93468 -14.49787 -14.05172 -13.99228 -13.81551 -13.57220 -13.52034 -13.30911 -12.89001 -12.83319 -12.70518 -12.60422 -12.51428 -12.19224 -12.03765 -11.84634 -11.40398 -11.28288 -11.04159 -10.93027 -10.72813 -10.37769 -9.48903 -8.83983 -8.65550 -6.27154 -2.05711 -0.79815 -0.27143 -0.20478 0.79259 1.19522 1.34826 1.38354 1.49406 1.56331 1.97647 2.17914 2.21663 2.61676 2.67504 3.12904 3.24091 3.42257 3.46378 3.64798 3.77998 3.91526 4.30877 4.34718 4.40914 4.51928 4.56249 4.63456 4.91912 4.95116 5.00411 5.12079 5.26701 5.37071 5.43701 5.69653 5.88298 6.01130 6.11321 6.29745 6.55646 6.62067 6.64532 6.82654 7.01636 7.21603 8.20272 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.023992 B = 0.002324 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.783257 B =12044.584649 C =12843.186664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.800 5.800 2 C 0.032 3.968 3 Si 0.994 3.006 4 H -0.254 1.254 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.507 4.507 8 H 0.075 0.925 9 C 0.077 3.923 10 C -0.244 4.244 11 C -0.082 4.082 12 C -0.015 4.015 13 N -0.618 5.618 14 C 0.539 3.461 15 O -0.562 6.562 16 C -0.106 4.106 17 C -0.037 4.037 18 C 0.137 3.863 19 O -0.479 6.479 20 C -0.048 4.048 21 C -0.003 4.003 22 N -0.016 5.016 23 O -0.144 6.144 24 O -0.220 6.220 25 C -0.015 4.015 26 C -0.101 4.101 27 C -0.183 4.183 28 H 0.297 0.703 29 H 0.090 0.910 30 H 0.104 0.896 31 H 0.419 0.581 32 H 0.187 0.813 33 H 0.428 0.572 34 H 0.187 0.813 35 H 0.149 0.851 36 H 0.128 0.872 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.708 -16.339 -5.987 19.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.188 4.188 3 Si 0.814 3.186 4 H -0.179 1.179 5 H -0.189 1.189 6 H -0.186 1.186 7 C -0.535 4.535 8 H 0.093 0.907 9 C 0.075 3.925 10 C -0.264 4.264 11 C -0.102 4.102 12 C -0.109 4.109 13 N -0.263 5.263 14 C 0.327 3.673 15 O -0.442 6.442 16 C -0.110 4.110 17 C -0.056 4.056 18 C 0.090 3.910 19 O -0.294 6.294 20 C -0.068 4.068 21 C -0.089 4.089 22 N 0.461 4.539 23 O -0.348 6.348 24 O -0.402 6.402 25 C -0.035 4.035 26 C -0.121 4.121 27 C -0.203 4.203 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.258 0.742 32 H 0.204 0.796 33 H 0.291 0.709 34 H 0.205 0.795 35 H 0.167 0.833 36 H 0.145 0.855 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.805 -15.208 -5.588 18.938 hybrid contribution 0.739 0.153 0.388 0.849 sum -9.065 -15.055 -5.200 18.327 Atomic orbital electron populations 1.69096 1.09786 1.31552 1.31828 1.28296 0.95499 1.04577 0.90442 0.85029 0.78899 0.74769 0.79928 1.17867 1.18859 1.18563 1.20788 0.94489 0.90561 1.47646 0.90695 1.18010 0.93289 0.92536 0.88693 1.20887 1.01896 0.96039 1.07589 1.20475 0.93566 0.97121 0.99018 1.17117 0.93905 0.87371 1.12507 1.42317 1.47707 1.19700 1.16544 1.18348 0.82687 0.83993 0.82225 1.90811 1.40365 1.71504 1.41529 1.19414 1.00672 0.95748 0.95196 1.22450 0.88956 0.95552 0.98677 1.17635 0.91544 0.92479 0.89313 1.84893 1.36890 1.70520 1.37106 1.21798 0.93576 1.01034 0.90417 1.19952 1.07451 0.95563 0.85945 1.50656 0.98660 1.01249 1.03319 1.96235 1.40004 1.10209 1.88361 1.96356 1.35312 1.76566 1.31952 1.21038 0.94588 0.89808 0.98074 1.20512 0.98895 0.91864 1.00799 1.21158 0.97958 0.96856 1.04290 0.89119 0.89164 0.87768 0.74208 0.79568 0.70918 0.79538 0.83316 0.85460 0.86523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -39.34 10.72 23.22 0.25 -39.09 16 2 C 0.03 1.57 5.59 87.22 0.49 2.06 16 3 Si 0.99 36.49 29.65 68.60 2.03 38.53 16 4 H -0.25 -8.80 7.11 99.48 0.71 -8.09 16 5 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 6 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 7 C -0.51 -27.01 9.25 24.79 0.23 -26.78 16 8 H 0.07 3.89 7.94 -2.91 -0.02 3.87 16 9 C 0.08 4.14 5.59 -21.25 -0.12 4.02 16 10 C -0.24 -12.57 9.76 22.58 0.22 -12.35 16 11 C -0.08 -3.85 8.59 22.16 0.19 -3.66 16 12 C -0.02 -0.63 6.30 38.99 0.25 -0.38 16 13 N -0.62 -18.04 5.21 -305.70 -1.59 -19.63 16 14 C 0.54 16.54 7.59 86.77 0.66 17.20 16 15 O -0.56 -23.18 13.74 -3.82 -0.05 -23.23 16 16 C -0.11 -2.19 5.87 -20.10 -0.12 -2.30 16 17 C -0.04 -0.41 9.48 22.64 0.21 -0.20 16 18 C 0.14 1.17 6.70 22.47 0.15 1.32 16 19 O -0.48 -1.90 13.50 -92.48 -1.25 -3.15 16 20 C -0.05 -0.58 9.51 22.42 0.21 -0.37 16 21 C 0.00 -0.06 6.88 36.32 0.25 0.19 16 22 N -0.02 -0.42 4.98 -46.59 -0.23 -0.65 16 23 O -0.14 -3.56 19.14 3.51 0.07 -3.49 16 24 O -0.22 -6.94 19.14 3.52 0.07 -6.87 16 25 C -0.01 -0.33 9.12 22.54 0.21 -0.13 16 26 C -0.10 -4.22 9.89 22.16 0.22 -4.00 16 27 C -0.18 -9.11 8.68 22.57 0.20 -8.91 16 28 H 0.30 12.94 8.27 -92.71 -0.77 12.17 16 29 H 0.09 4.54 8.06 -2.91 -0.02 4.51 16 30 H 0.10 4.87 6.22 -2.91 -0.02 4.85 16 31 H 0.42 7.79 6.85 -92.71 -0.64 7.15 16 32 H 0.19 0.93 6.41 -2.91 -0.02 0.91 16 33 H 0.43 -2.76 9.06 -74.06 -0.67 -3.43 16 34 H 0.19 1.52 7.56 -2.91 -0.02 1.49 16 35 H 0.15 4.13 7.15 -2.91 -0.02 4.11 16 36 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 37 H 0.12 6.00 6.16 -2.91 -0.02 5.98 16 Total: -1.00 -73.91 337.94 2.42 -71.50 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: -0.12 Total: 20.39 kcal Atomic # 6 Polarization: -37.54 SS G_CDS: 3.24 Total: -34.29 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -1.58 Total: -59.38 kcal Atomic # 8 Polarization: -35.58 SS G_CDS: -1.17 Total: -36.75 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.53 kcal Total: -73.91 2.42 -71.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427908906.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.369 kcal (2) G-P(sol) polarization free energy of solvation -73.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds