Wall clock time and date at job start Tue Mar 31 2020 15:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99950 * 2 1 4 4 H 1.48494 * 109.46860 * 239.99951 * 3 2 1 5 5 H 1.48505 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46975 * 120.00122 * 3 2 1 7 7 C 1.37875 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99783 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.36460 * 125.84959 * 275.17310 * 10 9 7 12 12 C 1.34983 * 108.95581 * 180.23364 * 11 10 9 13 13 C 1.41202 * 108.24264 * 359.76641 * 12 11 10 14 14 N 1.32888 * 126.37871 * 180.02562 * 13 12 11 15 15 C 1.34035 * 120.00419 * 359.97438 * 14 13 12 16 16 O 1.21988 * 119.99507 * 359.97438 * 15 14 13 17 17 C 1.47102 * 120.00388 * 180.02562 * 15 14 13 18 18 C 1.36721 * 126.12747 * 179.68648 * 17 15 14 19 19 C 1.39933 * 107.26574 * 179.87800 * 18 17 15 20 20 C 1.35415 * 107.77712 * 0.38173 * 19 18 17 21 21 C 1.50695 * 125.69609 * 179.72721 * 20 19 18 22 22 F 1.39907 * 109.46733 * 270.04394 * 21 20 19 23 23 F 1.39903 * 109.47219 * 30.04237 * 21 20 19 24 24 F 1.39898 * 109.47510 * 150.04366 * 21 20 19 25 25 N 1.35709 * 108.61137 * 359.76436 * 20 19 18 26 26 H 0.96997 * 125.70286 * 180.02562 * 25 20 19 27 27 N 1.37493 * 107.23812 * 359.97438 * 13 12 11 28 28 H 0.97001 * 126.36655 * 179.97438 * 27 13 12 29 29 H 0.97003 * 119.99629 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.46491 * 60.00097 * 9 7 2 31 31 H 1.08997 * 109.47333 * 300.00565 * 9 7 2 32 32 H 1.07999 * 125.51828 * 0.03283 * 11 10 9 33 33 H 1.08005 * 125.87527 * 179.78700 * 12 11 10 34 34 H 1.07998 * 126.35960 * 0.02562 * 18 17 15 35 35 H 1.08002 * 126.10875 * 180.12634 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7466 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7982 -4.1552 -1.1021 12 6 3.6067 -5.1633 -0.7119 13 6 3.5331 -5.2700 0.6941 14 7 4.1855 -6.1438 1.4535 15 6 5.0092 -7.0383 0.8895 16 8 5.1595 -7.0504 -0.3210 17 6 5.7309 -8.0060 1.7301 18 6 6.5925 -8.9716 1.2892 19 6 7.0535 -9.6626 2.4154 20 6 6.4641 -9.1164 3.5054 21 6 6.6711 -9.5583 4.9311 22 9 5.7326 -10.5442 5.2546 23 9 7.9620 -10.0781 5.0755 24 9 6.5109 -8.4632 5.7868 25 7 5.6553 -8.1051 3.0994 26 1 5.1146 -7.5455 3.6785 27 7 2.6616 -4.3005 1.1312 28 1 2.4077 -4.1279 2.0514 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5566 -0.8904 31 1 0.6247 -2.5571 0.8896 32 1 2.6445 -3.8327 -2.1213 33 1 4.2069 -5.7815 -1.3631 34 1 6.8681 -9.1636 0.2628 35 1 7.7511 -10.4870 2.4149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449888466.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:00 Heat of formation + Delta-G solvation = -41.396266 kcal Electronic energy + Delta-G solvation = -26214.648117 eV Core-core repulsion = 21608.362569 eV Total energy + Delta-G solvation = -4606.285548 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.36154 -47.90587 -47.84276 -41.37722 -40.96542 -38.28366 -34.42690 -33.14938 -31.44650 -31.24791 -30.90947 -30.40122 -27.12892 -25.91560 -23.66505 -22.58577 -21.51893 -21.17462 -20.59710 -20.04577 -18.76028 -18.72231 -18.17057 -17.30696 -16.96494 -16.16222 -15.44722 -15.14412 -15.09412 -14.81459 -14.74056 -14.47983 -14.31178 -14.29133 -14.18923 -14.00909 -14.00657 -13.52017 -13.35462 -13.14747 -13.03706 -12.67899 -12.57074 -12.15656 -12.10728 -11.46722 -11.12060 -10.63178 -10.57074 -9.86096 -9.74187 -9.25002 -9.15640 -9.00613 -8.70833 -8.55750 -7.17580 -6.60407 -4.75922 1.09562 1.74972 1.87637 2.23302 2.47600 2.98224 3.01406 3.05467 3.07681 3.10784 3.60041 3.93121 4.00985 4.05377 4.18252 4.37778 4.59383 4.72601 5.08055 5.16101 5.26813 5.61480 5.75934 5.83829 5.94429 6.18010 6.34378 6.41701 6.52477 6.62805 6.76774 7.19151 7.26016 7.29898 7.39601 7.42582 7.72144 8.00717 8.32090 8.95439 9.02110 10.43344 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.002251 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.807771 B =12434.824576 C =13092.807641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.072 3.928 3 Si 0.911 3.089 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.562 4.562 8 H 0.070 0.930 9 C 0.253 3.747 10 N -0.336 5.336 11 C 0.167 3.833 12 C -0.331 4.331 13 C 0.471 3.529 14 N -0.704 5.704 15 C 0.556 3.444 16 O -0.563 6.563 17 C 0.058 3.942 18 C -0.146 4.146 19 C -0.133 4.133 20 C -0.086 4.086 21 C 0.542 3.458 22 F -0.174 7.174 23 F -0.166 7.166 24 F -0.180 7.180 25 N -0.500 5.500 26 H 0.429 0.571 27 N -0.463 5.463 28 H 0.446 0.554 29 H 0.274 0.726 30 H 0.071 0.929 31 H 0.053 0.947 32 H 0.191 0.809 33 H 0.185 0.815 34 H 0.156 0.844 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.576 -13.728 4.886 16.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.134 4.134 3 Si 0.737 3.263 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.198 1.198 7 C -0.600 4.600 8 H 0.088 0.912 9 C 0.137 3.863 10 N -0.120 5.120 11 C 0.020 3.980 12 C -0.363 4.363 13 C 0.222 3.778 14 N -0.469 5.469 15 C 0.341 3.659 16 O -0.443 6.443 17 C -0.060 4.060 18 C -0.172 4.172 19 C -0.160 4.160 20 C -0.202 4.202 21 C 0.487 3.513 22 F -0.155 7.155 23 F -0.148 7.148 24 F -0.161 7.161 25 N -0.095 5.095 26 H 0.269 0.731 27 N -0.185 5.185 28 H 0.294 0.706 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.208 0.792 33 H 0.202 0.798 34 H 0.174 0.826 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.030 -13.252 5.356 15.928 hybrid contribution 0.103 1.284 0.483 1.376 sum 7.134 -11.967 5.839 15.106 Atomic orbital electron populations 1.69881 1.06160 1.28571 1.47552 1.24953 0.95030 0.99786 0.93642 0.86325 0.79444 0.81266 0.79254 1.19594 1.20725 1.19820 1.21345 0.94042 0.89433 1.55198 0.91208 1.20143 0.85566 0.79706 1.00927 1.48197 1.38893 1.28577 0.96382 1.22920 0.90921 0.91846 0.92279 1.22455 1.11889 1.06952 0.94992 1.19025 0.84131 0.84672 0.89956 1.68751 1.24986 1.15946 1.37267 1.17801 0.80682 0.82092 0.85345 1.90695 1.65525 1.72490 1.15556 1.20458 1.03242 1.01017 0.81300 1.21064 0.99876 0.96716 0.99495 1.20663 1.02764 1.02311 0.90249 1.19995 1.07000 1.00640 0.92597 1.17335 0.74305 0.75014 0.84620 1.93250 1.65446 1.63133 1.93679 1.93212 1.38311 1.87082 1.96164 1.93211 1.95306 1.54315 1.73298 1.41713 1.34291 1.25788 1.07724 0.73147 1.44637 1.41291 1.28784 1.03764 0.70626 0.91660 0.91111 0.92925 0.79172 0.79761 0.82647 0.83096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.78 13.29 55.43 0.74 -21.05 16 2 C 0.07 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.91 18.69 29.54 -169.99 -5.02 13.67 16 4 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.56 -12.78 9.39 -34.44 -0.32 -13.10 16 8 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 9 C 0.25 4.95 6.19 -5.19 -0.03 4.92 16 10 N -0.34 -5.75 3.63 -62.23 -0.23 -5.98 16 11 C 0.17 2.57 11.45 -16.65 -0.19 2.38 16 12 C -0.33 -5.63 9.52 -39.61 -0.38 -6.01 16 13 C 0.47 8.38 8.07 -155.26 -1.25 7.13 16 14 N -0.70 -12.66 10.51 -12.38 -0.13 -12.79 16 15 C 0.56 10.16 7.72 -13.00 -0.10 10.06 16 16 O -0.56 -11.21 13.81 4.93 0.07 -11.14 16 17 C 0.06 0.90 7.04 -82.28 -0.58 0.32 16 18 C -0.15 -2.00 10.59 -39.50 -0.42 -2.41 16 19 C -0.13 -1.57 10.38 -39.95 -0.41 -1.98 16 20 C -0.09 -1.05 6.49 -81.89 -0.53 -1.58 16 21 C 0.54 5.95 3.54 36.00 0.13 6.07 16 22 F -0.17 -1.94 17.30 2.25 0.04 -1.90 16 23 F -0.17 -1.76 17.01 2.25 0.04 -1.72 16 24 F -0.18 -2.02 17.26 2.25 0.04 -1.98 16 25 N -0.50 -6.65 6.04 -5.84 -0.04 -6.68 16 26 H 0.43 5.22 8.96 -40.82 -0.37 4.85 16 27 N -0.46 -7.57 7.38 31.34 0.23 -7.34 16 28 H 0.45 6.35 8.96 -182.55 -1.64 4.71 16 29 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 30 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.19 2.25 8.06 -52.49 -0.42 1.83 16 33 H 0.19 3.27 5.77 -52.48 -0.30 2.97 16 34 H 0.16 1.95 8.06 -52.49 -0.42 1.53 16 35 H 0.15 1.36 8.06 -52.49 -0.42 0.94 16 LS Contribution 333.20 15.07 5.02 5.02 Total: -1.00 -27.08 333.20 -7.39 -34.48 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -3.96 Total: 10.04 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -4.19 Total: 7.37 kcal Atomic # 7 Polarization: -54.41 SS G_CDS: 0.58 Total: -53.83 kcal Atomic # 8 Polarization: -11.21 SS G_CDS: 0.07 Total: -11.14 kcal Atomic # 9 Polarization: -5.72 SS G_CDS: 0.12 Total: -5.60 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.02 Total: 13.67 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -27.08 -7.39 -34.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449888466.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.917 kcal (2) G-P(sol) polarization free energy of solvation -27.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds