Wall clock time and date at job start Tue Mar 31 2020 15:05:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 119.99950 * 2 1 4 4 H 1.48494 * 109.46860 * 239.99951 * 3 2 1 5 5 H 1.48505 * 109.47175 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46975 * 120.00122 * 3 2 1 7 7 C 1.37875 * 120.00247 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00171 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99783 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46981 * 180.02562 * 9 7 2 11 11 C 1.36460 * 125.84959 * 275.17310 * 10 9 7 12 12 C 1.34983 * 108.95581 * 180.23364 * 11 10 9 13 13 C 1.41202 * 108.24264 * 359.76641 * 12 11 10 14 14 N 1.32888 * 126.37871 * 180.02562 * 13 12 11 15 15 C 1.34035 * 120.00419 * 359.97438 * 14 13 12 16 16 O 1.21988 * 119.99507 * 359.97438 * 15 14 13 17 17 C 1.47102 * 120.00388 * 180.02562 * 15 14 13 18 18 C 1.36721 * 126.12747 * 179.68648 * 17 15 14 19 19 C 1.39933 * 107.26574 * 179.87800 * 18 17 15 20 20 C 1.35415 * 107.77712 * 0.38173 * 19 18 17 21 21 C 1.50695 * 125.69609 * 179.72721 * 20 19 18 22 22 F 1.39907 * 109.46733 * 270.04394 * 21 20 19 23 23 F 1.39903 * 109.47219 * 30.04237 * 21 20 19 24 24 F 1.39898 * 109.47510 * 150.04366 * 21 20 19 25 25 N 1.35709 * 108.61137 * 359.76436 * 20 19 18 26 26 H 0.96997 * 125.70286 * 180.02562 * 25 20 19 27 27 N 1.37493 * 107.23812 * 359.97438 * 13 12 11 28 28 H 0.97001 * 126.36655 * 179.97438 * 27 13 12 29 29 H 0.97003 * 119.99629 * 359.97438 * 1 2 3 30 30 H 1.09006 * 109.46491 * 60.00097 * 9 7 2 31 31 H 1.08997 * 109.47333 * 300.00565 * 9 7 2 32 32 H 1.07999 * 125.51828 * 0.03283 * 11 10 9 33 33 H 1.08005 * 125.87527 * 179.78700 * 12 11 10 34 34 H 1.07998 * 126.35960 * 0.02562 * 18 17 15 35 35 H 1.08002 * 126.10875 * 180.12634 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7466 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 2.7982 -4.1552 -1.1021 12 6 3.6067 -5.1633 -0.7119 13 6 3.5331 -5.2700 0.6941 14 7 4.1855 -6.1438 1.4535 15 6 5.0092 -7.0383 0.8895 16 8 5.1595 -7.0504 -0.3210 17 6 5.7309 -8.0060 1.7301 18 6 6.5925 -8.9716 1.2892 19 6 7.0535 -9.6626 2.4154 20 6 6.4641 -9.1164 3.5054 21 6 6.6711 -9.5583 4.9311 22 9 5.7326 -10.5442 5.2546 23 9 7.9620 -10.0781 5.0755 24 9 6.5109 -8.4632 5.7868 25 7 5.6553 -8.1051 3.0994 26 1 5.1146 -7.5455 3.6785 27 7 2.6616 -4.3005 1.1312 28 1 2.4077 -4.1279 2.0514 29 1 -0.4850 0.8401 0.0004 30 1 0.6241 -2.5566 -0.8904 31 1 0.6247 -2.5571 0.8896 32 1 2.6445 -3.8327 -2.1213 33 1 4.2069 -5.7815 -1.3631 34 1 6.8681 -9.1636 0.2628 35 1 7.7511 -10.4870 2.4149 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449888466.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:00 Heat of formation + Delta-G solvation = -57.448856 kcal Electronic energy + Delta-G solvation = -26215.344209 eV Core-core repulsion = 21608.362569 eV Total energy + Delta-G solvation = -4606.981641 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.24774 -48.78962 -48.72341 -42.51056 -42.23493 -39.65104 -35.99453 -34.71558 -32.69542 -32.57382 -32.08742 -31.57919 -28.63973 -27.06117 -25.12320 -23.92449 -22.81310 -22.32335 -21.63905 -21.16667 -19.81008 -19.60765 -19.16171 -18.90778 -18.46061 -17.43655 -16.86932 -16.58810 -16.46362 -15.93190 -15.74547 -15.62242 -15.52684 -15.25036 -15.16349 -14.90820 -14.88279 -14.70422 -14.65451 -14.42671 -14.23614 -14.17056 -13.77181 -13.65681 -13.11081 -13.09912 -12.74384 -12.33006 -12.14496 -11.28926 -11.22916 -10.78556 -10.58958 -10.15950 -10.11710 -9.65405 -8.64941 -8.31141 -6.58058 -0.16137 0.48765 0.62108 1.27859 1.36928 1.39001 1.42629 1.48843 1.80632 2.01212 2.29121 2.62960 2.69654 2.93523 3.01911 3.10628 3.29465 3.35716 3.85557 4.18272 4.25053 4.31176 4.42808 4.74422 4.82697 4.84771 4.91122 5.09031 5.21000 5.49062 5.53369 5.67800 5.72628 5.90090 6.04212 6.20162 6.34020 6.53993 6.68405 7.15980 7.64438 8.64236 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.002251 C = 0.002138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.807771 B =12434.824576 C =13092.807641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.032 3.968 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.276 1.276 7 C -0.567 4.567 8 H 0.061 0.939 9 C 0.266 3.734 10 N -0.342 5.342 11 C 0.181 3.819 12 C -0.341 4.341 13 C 0.456 3.544 14 N -0.709 5.709 15 C 0.546 3.454 16 O -0.589 6.589 17 C 0.026 3.974 18 C -0.143 4.143 19 C -0.129 4.129 20 C -0.081 4.081 21 C 0.551 3.449 22 F -0.173 7.173 23 F -0.160 7.160 24 F -0.181 7.181 25 N -0.499 5.499 26 H 0.432 0.568 27 N -0.459 5.459 28 H 0.453 0.547 29 H 0.274 0.726 30 H 0.075 0.925 31 H 0.045 0.955 32 H 0.228 0.772 33 H 0.178 0.822 34 H 0.163 0.837 35 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.428 -14.238 5.115 17.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.171 4.171 3 Si 0.787 3.213 4 H -0.192 1.192 5 H -0.206 1.206 6 H -0.202 1.202 7 C -0.605 4.605 8 H 0.079 0.921 9 C 0.149 3.851 10 N -0.127 5.127 11 C 0.036 3.964 12 C -0.373 4.373 13 C 0.207 3.793 14 N -0.474 5.474 15 C 0.333 3.667 16 O -0.471 6.471 17 C -0.092 4.092 18 C -0.168 4.168 19 C -0.155 4.155 20 C -0.197 4.197 21 C 0.496 3.504 22 F -0.154 7.154 23 F -0.142 7.142 24 F -0.162 7.162 25 N -0.095 5.095 26 H 0.271 0.729 27 N -0.181 5.181 28 H 0.302 0.698 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.063 0.937 32 H 0.244 0.756 33 H 0.195 0.805 34 H 0.180 0.820 35 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 7.883 -13.767 5.605 16.825 hybrid contribution -0.118 1.365 0.450 1.442 sum 7.765 -12.402 6.055 15.836 Atomic orbital electron populations 1.69947 1.07113 1.29110 1.48809 1.25574 0.95601 1.02313 0.93619 0.85533 0.78343 0.78457 0.78986 1.19241 1.20584 1.20157 1.21569 0.93795 0.90840 1.54340 0.92103 1.19806 0.85412 0.79258 1.00633 1.48024 1.39081 1.28492 0.97076 1.23467 0.89210 0.90516 0.93207 1.22413 1.12549 1.07632 0.94713 1.19264 0.84443 0.84994 0.90626 1.68812 1.25123 1.16097 1.37381 1.18234 0.80614 0.82377 0.85506 1.90663 1.66521 1.73379 1.16576 1.20231 1.04915 1.01943 0.82113 1.21299 0.98983 0.96059 1.00488 1.21004 1.02742 1.02619 0.89104 1.20302 1.06101 0.99848 0.93499 1.17112 0.74478 0.74927 0.83889 1.93256 1.65500 1.63060 1.93595 1.93229 1.37885 1.86962 1.96075 1.93215 1.95330 1.54445 1.73227 1.41679 1.34539 1.26160 1.07077 0.72859 1.44609 1.41040 1.28440 1.04028 0.69761 0.91668 0.90743 0.93706 0.75617 0.80453 0.81990 0.80071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -44.43 13.29 21.45 0.28 -44.15 16 2 C 0.03 1.46 5.46 84.65 0.46 1.93 16 3 Si 0.96 37.66 29.54 68.60 2.03 39.68 16 4 H -0.27 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 6 H -0.28 -10.87 7.11 99.48 0.71 -10.16 16 7 C -0.57 -25.31 9.39 25.60 0.24 -25.07 16 8 H 0.06 2.79 7.81 -2.91 -0.02 2.77 16 9 C 0.27 10.21 6.19 85.63 0.53 10.74 16 10 N -0.34 -11.39 3.63 -350.81 -1.27 -12.66 16 11 C 0.18 5.34 11.45 83.22 0.95 6.29 16 12 C -0.34 -11.50 9.52 22.25 0.21 -11.29 16 13 C 0.46 16.19 8.07 133.94 1.08 17.27 16 14 N -0.71 -25.70 10.51 -311.59 -3.28 -28.98 16 15 C 0.55 20.19 7.72 86.68 0.67 20.86 16 16 O -0.59 -23.86 13.81 -5.28 -0.07 -23.93 16 17 C 0.03 0.79 7.04 40.23 0.28 1.07 16 18 C -0.14 -3.73 10.59 22.33 0.24 -3.49 16 19 C -0.13 -2.74 10.38 22.03 0.23 -2.51 16 20 C -0.08 -1.83 6.49 41.31 0.27 -1.56 16 21 C 0.55 10.96 3.54 71.23 0.25 11.22 16 22 F -0.17 -3.51 17.30 44.97 0.78 -2.74 16 23 F -0.16 -2.99 17.01 44.97 0.76 -2.22 16 24 F -0.18 -3.76 17.26 44.97 0.78 -2.99 16 25 N -0.50 -12.90 6.04 -172.40 -1.04 -13.94 16 26 H 0.43 10.33 8.96 -92.71 -0.83 9.50 16 27 N -0.46 -14.82 7.38 -54.77 -0.40 -15.22 16 28 H 0.45 12.82 8.96 -213.28 -1.91 10.90 16 29 H 0.27 12.79 8.31 -92.71 -0.77 12.02 16 30 H 0.07 2.85 8.14 -2.38 -0.02 2.83 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.23 4.77 8.06 -2.91 -0.02 4.75 16 33 H 0.18 6.33 5.77 -2.91 -0.02 6.32 16 34 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 35 H 0.18 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -56.58 333.20 2.44 -54.14 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: -1.54 Total: 27.56 kcal Atomic # 6 Polarization: 20.04 SS G_CDS: 5.42 Total: 25.45 kcal Atomic # 7 Polarization: -109.24 SS G_CDS: -5.71 Total: -114.96 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.07 Total: -23.93 kcal Atomic # 9 Polarization: -10.27 SS G_CDS: 2.32 Total: -7.95 kcal Atomic # 14 Polarization: 37.66 SS G_CDS: 2.03 Total: 39.68 kcal Total: -56.58 2.44 -54.14 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449888466.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.305 kcal (2) G-P(sol) polarization free energy of solvation -56.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds