Wall clock time and date at job start Tue Mar 31 2020 14:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00376 * 2 1 4 4 H 1.48493 * 109.47081 * 270.00325 * 3 2 1 5 5 H 1.48504 * 109.46688 * 30.00115 * 3 2 1 6 6 H 1.48499 * 109.46998 * 149.99889 * 3 2 1 7 7 C 1.38802 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99575 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99473 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47390 * 179.97438 * 11 10 9 13 13 S 1.81400 * 109.46945 * 180.02562 * 12 11 10 14 14 C 1.81409 * 102.99767 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46814 * 65.00216 * 14 13 12 16 16 C 1.52997 * 109.47317 * 60.00042 * 15 14 13 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 C 1.53001 * 109.46886 * 180.02562 * 17 16 15 19 19 F 1.39895 * 109.47517 * 59.99549 * 18 17 16 20 20 F 1.39901 * 109.47059 * 180.02562 * 18 17 16 21 21 F 1.39904 * 109.46640 * 299.99483 * 18 17 16 22 22 C 1.53002 * 109.47233 * 299.99657 * 17 16 15 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 17 16 24 24 H 0.97011 * 119.99368 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47379 * 60.00559 * 10 9 7 26 26 H 1.08998 * 109.47264 * 299.99775 * 10 9 7 27 27 H 1.09008 * 109.47112 * 60.00002 * 11 10 9 28 28 H 1.08992 * 109.47155 * 300.00293 * 11 10 9 29 29 H 1.08999 * 109.47028 * 59.99986 * 12 11 10 30 30 H 1.08998 * 109.47310 * 299.99904 * 12 11 10 31 31 H 1.09000 * 109.47067 * 304.99993 * 14 13 12 32 32 H 1.08996 * 109.46929 * 299.99146 * 15 14 13 33 33 H 1.09002 * 109.46716 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 35 35 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 36 36 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 37 37 H 1.08993 * 109.47662 * 180.02562 * 22 17 16 38 38 H 1.09002 * 109.47075 * 300.00932 * 22 17 16 39 39 H 1.09002 * 109.47153 * 60.00231 * 23 22 17 40 40 H 1.09001 * 109.47289 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4400 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8914 -0.0005 11 6 1.9790 -5.3243 -0.0012 12 6 3.1510 -6.3078 -0.0018 13 16 2.5147 -8.0066 -0.0034 14 6 4.0269 -9.0087 -0.0032 15 6 4.7880 -8.7831 1.3048 16 6 3.9051 -9.1919 2.4856 17 6 3.5366 -10.6714 2.3586 18 6 2.6532 -11.0800 3.5391 19 9 1.4871 -10.3072 3.5385 20 9 2.3166 -12.4330 3.4234 21 9 3.3487 -10.8737 4.7353 22 6 2.7754 -10.8970 1.0507 23 6 3.6582 -10.4882 -0.1301 24 1 -0.4850 0.8402 0.0004 25 1 3.1242 -3.7315 0.8895 26 1 3.1242 -3.7314 -0.8905 27 1 1.3706 -5.4841 -0.8915 28 1 1.3702 -5.4847 0.8885 29 1 3.7597 -6.1482 0.8881 30 1 3.7595 -6.1474 -0.8918 31 1 4.6559 -8.7174 -0.8444 32 1 5.0506 -7.7291 1.3952 33 1 5.6963 -9.3856 1.3051 34 1 2.9965 -8.5898 2.4855 35 1 4.4475 -9.0316 3.4174 36 1 4.4451 -11.2735 2.3587 37 1 2.5124 -11.9509 0.9604 38 1 1.8668 -10.2948 1.0506 39 1 4.5668 -11.0903 -0.1300 40 1 3.1159 -10.6484 -1.0619 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451039197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:52 Heat of formation + Delta-G solvation = -199.356147 kcal Electronic energy + Delta-G solvation = -23332.171953 eV Core-core repulsion = 19368.481165 eV Total energy + Delta-G solvation = -3963.690788 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.084 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.32603 -47.83252 -47.75684 -38.94219 -34.34476 -32.44407 -32.32970 -31.36922 -27.08841 -26.03755 -25.46924 -23.23789 -22.43696 -21.41939 -20.47023 -18.55261 -18.48041 -17.86785 -17.49157 -16.20594 -15.89489 -15.24873 -15.03572 -14.82699 -14.79562 -14.63330 -14.44016 -14.20895 -14.11930 -13.96231 -13.94155 -13.73230 -13.21241 -13.12136 -12.73453 -12.64410 -12.47064 -12.33640 -11.75403 -11.57847 -11.50528 -11.25975 -11.08553 -10.83504 -10.78215 -10.74057 -10.61210 -10.53086 -9.79737 -9.56485 -9.07488 -8.33197 -7.65040 -6.55158 -6.24288 -3.95037 1.55630 2.48728 2.54908 3.20475 3.21218 3.28151 3.50848 3.55217 3.67542 3.76948 4.20386 4.24799 4.29090 4.52592 4.64823 4.70306 4.82606 4.90976 5.01878 5.04359 5.11930 5.14606 5.19356 5.36005 5.42156 5.45831 5.51277 5.57096 5.68066 5.71786 5.76119 5.78176 5.92558 5.95872 6.24557 6.47253 6.66690 7.58781 8.34788 9.21867 10.83868 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.002237 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.505223 B =12514.649974 C =12927.284977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.071 3.929 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.517 4.517 8 H 0.072 0.928 9 S -0.129 6.129 10 C -0.109 4.109 11 C -0.082 4.082 12 C -0.079 4.079 13 S -0.249 6.249 14 C -0.063 4.063 15 C -0.110 4.110 16 C -0.126 4.126 17 C -0.126 4.126 18 C 0.452 3.548 19 F -0.176 7.176 20 F -0.187 7.187 21 F -0.186 7.186 22 C -0.123 4.123 23 C -0.092 4.092 24 H 0.268 0.732 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.110 0.890 37 H 0.077 0.923 38 H 0.090 0.910 39 H 0.077 0.923 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.249 -25.304 3.086 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.665 4.665 8 H 0.090 0.910 9 S 0.099 5.901 10 C -0.260 4.260 11 C -0.122 4.122 12 C -0.229 4.229 13 S -0.021 6.021 14 C -0.192 4.192 15 C -0.149 4.149 16 C -0.163 4.163 17 C -0.146 4.146 18 C 0.398 3.602 19 F -0.158 7.158 20 F -0.168 7.168 21 F -0.167 7.167 22 C -0.161 4.161 23 C -0.130 4.130 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.093 0.907 28 H 0.094 0.906 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.116 0.884 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.096 0.904 40 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 7.878 -25.741 3.102 27.098 hybrid contribution 3.067 1.644 0.224 3.487 sum 10.945 -24.098 3.326 26.675 Atomic orbital electron populations 1.70028 1.05922 1.27366 1.47132 1.25022 0.95088 0.99103 0.94588 0.86160 0.79431 0.81538 0.78367 1.20261 1.20725 1.19698 1.22680 0.94498 0.90744 1.58619 0.90958 1.84692 1.09176 0.99330 1.96854 1.23261 1.03096 0.96699 1.02914 1.21032 0.95664 0.91636 1.03870 1.23538 1.01941 0.92748 1.04652 1.86902 1.14541 1.03028 1.97608 1.23240 0.97327 0.97933 1.00737 1.21689 0.97946 1.02409 0.92881 1.21749 1.02687 0.92861 0.99045 1.22453 0.98864 1.00852 0.92391 1.20649 0.80228 0.74588 0.84702 1.93209 1.50905 1.74995 1.96680 1.93166 1.93178 1.34415 1.96088 1.93174 1.79001 1.94675 1.49871 1.21672 0.99687 1.02831 0.91902 1.21297 1.00255 0.92709 0.98788 0.92264 0.92038 0.92059 0.90676 0.90627 0.90203 0.90337 0.89147 0.90767 0.90838 0.88372 0.90569 0.87212 0.90448 0.89101 0.90446 0.90060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.96 13.22 55.49 0.73 -25.23 16 2 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 3 Si 0.92 21.44 29.55 -169.99 -5.02 16.42 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.52 -14.75 9.50 30.94 0.29 -14.46 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.13 -3.35 21.44 -107.50 -2.30 -5.66 16 10 C -0.11 -2.15 5.67 37.16 0.21 -1.94 16 11 C -0.08 -1.32 5.22 -26.73 -0.14 -1.46 16 12 C -0.08 -0.98 5.64 37.16 0.21 -0.77 16 13 S -0.25 -2.81 18.23 -107.50 -1.96 -4.77 16 14 C -0.06 -0.50 3.08 -26.73 -0.08 -0.58 16 15 C -0.11 -0.78 5.35 -26.73 -0.14 -0.92 16 16 C -0.13 -0.99 4.74 -26.73 -0.13 -1.12 16 17 C -0.13 -0.90 2.17 -90.62 -0.20 -1.10 16 18 C 0.45 4.13 2.69 37.16 0.10 4.23 16 19 F -0.18 -1.94 16.28 2.25 0.04 -1.90 16 20 F -0.19 -1.76 16.80 2.25 0.04 -1.73 16 21 F -0.19 -1.82 16.80 2.25 0.04 -1.79 16 22 C -0.12 -0.89 4.74 -26.73 -0.13 -1.02 16 23 C -0.09 -0.59 5.45 -26.73 -0.15 -0.74 16 24 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 26 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 27 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 28 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 29 H 0.08 0.93 7.14 -51.93 -0.37 0.56 16 30 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 31 H 0.09 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.07 0.57 6.92 -51.93 -0.36 0.21 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.10 0.97 6.57 -51.93 -0.34 0.63 16 35 H 0.08 0.56 7.80 -51.93 -0.41 0.16 16 36 H 0.11 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.08 0.49 7.80 -51.93 -0.41 0.09 16 38 H 0.09 0.84 6.57 -51.93 -0.34 0.49 16 39 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 353.71 15.07 5.33 5.33 Total: -1.00 -30.74 353.71 -9.35 -40.09 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.99 Total: -2.81 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: -0.24 Total: -17.96 kcal Atomic # 7 Polarization: -25.96 SS G_CDS: 0.73 Total: -25.23 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 0.11 Total: -5.41 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Atomic # 16 Polarization: -6.16 SS G_CDS: -4.26 Total: -10.43 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.74 -9.35 -40.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451039197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.264 kcal (2) G-P(sol) polarization free energy of solvation -30.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -190.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -199.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds