Wall clock time and date at job start Tue Mar 31 2020 14:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86801 * 120.00376 * 2 1 4 4 H 1.48493 * 109.47081 * 270.00325 * 3 2 1 5 5 H 1.48504 * 109.46688 * 30.00115 * 3 2 1 6 6 H 1.48499 * 109.46998 * 149.99889 * 3 2 1 7 7 C 1.38802 * 119.99528 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99575 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99861 * 359.97438 * 7 2 1 10 10 C 1.81000 * 99.99473 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.47148 * 180.02562 * 10 9 7 12 12 C 1.52996 * 109.47390 * 179.97438 * 11 10 9 13 13 S 1.81400 * 109.46945 * 180.02562 * 12 11 10 14 14 C 1.81409 * 102.99767 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.46814 * 65.00216 * 14 13 12 16 16 C 1.52997 * 109.47317 * 60.00042 * 15 14 13 17 17 C 1.53000 * 109.47060 * 59.99960 * 16 15 14 18 18 C 1.53001 * 109.46886 * 180.02562 * 17 16 15 19 19 F 1.39895 * 109.47517 * 59.99549 * 18 17 16 20 20 F 1.39901 * 109.47059 * 180.02562 * 18 17 16 21 21 F 1.39904 * 109.46640 * 299.99483 * 18 17 16 22 22 C 1.53002 * 109.47233 * 299.99657 * 17 16 15 23 23 C 1.52997 * 109.46817 * 60.00194 * 22 17 16 24 24 H 0.97011 * 119.99368 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47379 * 60.00559 * 10 9 7 26 26 H 1.08998 * 109.47264 * 299.99775 * 10 9 7 27 27 H 1.09008 * 109.47112 * 60.00002 * 11 10 9 28 28 H 1.08992 * 109.47155 * 300.00293 * 11 10 9 29 29 H 1.08999 * 109.47028 * 59.99986 * 12 11 10 30 30 H 1.08998 * 109.47310 * 299.99904 * 12 11 10 31 31 H 1.09000 * 109.47067 * 304.99993 * 14 13 12 32 32 H 1.08996 * 109.46929 * 299.99146 * 15 14 13 33 33 H 1.09002 * 109.46716 * 179.97438 * 15 14 13 34 34 H 1.09002 * 109.47153 * 299.99641 * 16 15 14 35 35 H 1.09001 * 109.46832 * 179.97438 * 16 15 14 36 36 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 37 37 H 1.08993 * 109.47662 * 180.02562 * 22 17 16 38 38 H 1.09002 * 109.47075 * 300.00932 * 22 17 16 39 39 H 1.09002 * 109.47153 * 60.00231 * 23 22 17 40 40 H 1.09001 * 109.47289 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2505 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4479 2.6526 0.7001 6 1 3.5480 1.4400 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0001 9 16 1.1291 -2.7280 -0.0005 10 6 2.5156 -3.8914 -0.0005 11 6 1.9790 -5.3243 -0.0012 12 6 3.1510 -6.3078 -0.0018 13 16 2.5147 -8.0066 -0.0034 14 6 4.0269 -9.0087 -0.0032 15 6 4.7880 -8.7831 1.3048 16 6 3.9051 -9.1919 2.4856 17 6 3.5366 -10.6714 2.3586 18 6 2.6532 -11.0800 3.5391 19 9 1.4871 -10.3072 3.5385 20 9 2.3166 -12.4330 3.4234 21 9 3.3487 -10.8737 4.7353 22 6 2.7754 -10.8970 1.0507 23 6 3.6582 -10.4882 -0.1301 24 1 -0.4850 0.8402 0.0004 25 1 3.1242 -3.7315 0.8895 26 1 3.1242 -3.7314 -0.8905 27 1 1.3706 -5.4841 -0.8915 28 1 1.3702 -5.4847 0.8885 29 1 3.7597 -6.1482 0.8881 30 1 3.7595 -6.1474 -0.8918 31 1 4.6559 -8.7174 -0.8444 32 1 5.0506 -7.7291 1.3952 33 1 5.6963 -9.3856 1.3051 34 1 2.9965 -8.5898 2.4855 35 1 4.4475 -9.0316 3.4174 36 1 4.4451 -11.2735 2.3587 37 1 2.5124 -11.9509 0.9604 38 1 1.8668 -10.2948 1.0506 39 1 4.5668 -11.0903 -0.1300 40 1 3.1159 -10.6484 -1.0619 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451039197.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:52 Heat of formation + Delta-G solvation = -213.889323 kcal Electronic energy + Delta-G solvation = -23332.802159 eV Core-core repulsion = 19368.481165 eV Total energy + Delta-G solvation = -3964.320994 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.084 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.07451 -48.56974 -48.54371 -39.51237 -35.67926 -34.60311 -32.92914 -31.93182 -28.50530 -27.57146 -26.70748 -23.82184 -23.20172 -22.59081 -21.11861 -19.57815 -19.29123 -19.21550 -18.53823 -17.14925 -16.90227 -16.69480 -16.30049 -16.13895 -15.64908 -15.47782 -15.30890 -15.19616 -14.97468 -14.82793 -14.72084 -14.71808 -14.43559 -13.95855 -13.77549 -13.69295 -13.38065 -13.19828 -13.03671 -12.97906 -12.92978 -12.50531 -12.20754 -12.10685 -12.00364 -11.91053 -11.41858 -11.35102 -11.24049 -11.15037 -10.57564 -10.33681 -8.68906 -8.52074 -8.37954 -6.14906 0.71021 1.31664 1.39468 1.49011 1.68077 1.76973 1.84196 2.27617 2.84816 2.96465 3.01936 3.11070 3.30304 3.64889 3.71863 3.88737 3.93557 4.03006 4.09343 4.11912 4.24111 4.28403 4.37227 4.37840 4.51543 4.63332 4.67963 4.75233 4.85584 4.89734 5.00910 5.04213 5.12727 5.18046 5.20258 5.23408 5.35893 5.39048 6.17449 7.04128 8.71548 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.022494 B = 0.002237 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1244.505223 B =12514.649974 C =12927.284977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.013 3.987 3 Si 0.995 3.005 4 H -0.267 1.267 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.536 4.536 8 H 0.075 0.925 9 S -0.201 6.201 10 C -0.083 4.083 11 C -0.072 4.072 12 C -0.068 4.068 13 S -0.285 6.285 14 C -0.051 4.051 15 C -0.107 4.107 16 C -0.126 4.126 17 C -0.117 4.117 18 C 0.447 3.553 19 F -0.193 7.193 20 F -0.189 7.189 21 F -0.191 7.191 22 C -0.123 4.123 23 C -0.088 4.088 24 H 0.271 0.729 25 H 0.066 0.934 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.068 0.932 33 H 0.101 0.899 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.139 0.861 37 H 0.087 0.913 38 H 0.065 0.935 39 H 0.108 0.892 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.082 -26.366 2.754 29.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.191 4.191 3 Si 0.817 3.183 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.684 4.684 8 H 0.093 0.907 9 S 0.027 5.973 10 C -0.233 4.233 11 C -0.111 4.111 12 C -0.218 4.218 13 S -0.057 6.057 14 C -0.180 4.180 15 C -0.146 4.146 16 C -0.164 4.164 17 C -0.136 4.136 18 C 0.393 3.607 19 F -0.174 7.174 20 F -0.171 7.171 21 F -0.172 7.172 22 C -0.161 4.161 23 C -0.126 4.126 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.108 0.892 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.087 0.913 33 H 0.120 0.880 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.156 0.844 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.709 -26.812 2.769 29.004 hybrid contribution 2.178 1.814 0.355 2.857 sum 12.887 -24.997 3.124 28.297 Atomic orbital electron populations 1.70170 1.07761 1.28560 1.47996 1.26105 0.96043 1.03222 0.93762 0.84994 0.78179 0.76247 0.78855 1.19226 1.20014 1.18570 1.23032 0.94758 0.91795 1.58843 0.90705 1.84746 1.14109 1.01370 1.97053 1.23169 1.00194 0.96652 1.03307 1.20869 0.96897 0.90434 1.02930 1.23291 1.00150 0.92762 1.05615 1.87099 1.18009 1.02883 1.97742 1.23375 0.95093 0.97785 1.01722 1.21694 0.98514 1.02639 0.91718 1.21714 1.01860 0.92989 0.99848 1.22489 0.99309 1.00723 0.91108 1.21051 0.80027 0.74308 0.85284 1.93178 1.52023 1.75452 1.96768 1.93158 1.93240 1.34567 1.96101 1.93161 1.78966 1.94694 1.50416 1.21654 0.98990 1.02994 0.92422 1.21336 1.01319 0.91858 0.98126 0.91970 0.91542 0.91455 0.91578 0.91710 0.89246 0.89301 0.87977 0.91347 0.88023 0.90894 0.90158 0.84358 0.89442 0.91607 0.87395 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.28 13.22 21.65 0.29 -54.99 16 2 C 0.01 0.77 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.84 29.55 68.60 2.03 45.87 16 4 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 5 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 6 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 7 C -0.54 -30.98 9.50 67.95 0.65 -30.33 16 8 H 0.07 4.12 7.80 -2.91 -0.02 4.10 16 9 S -0.20 -10.81 21.44 -56.49 -1.21 -12.02 16 10 C -0.08 -3.26 5.67 71.98 0.41 -2.85 16 11 C -0.07 -2.31 5.22 30.59 0.16 -2.15 16 12 C -0.07 -1.62 5.64 71.98 0.41 -1.22 16 13 S -0.29 -6.20 18.23 -56.49 -1.03 -7.23 16 14 C -0.05 -0.66 3.08 30.60 0.09 -0.57 16 15 C -0.11 -1.18 5.35 30.59 0.16 -1.02 16 16 C -0.13 -1.76 4.74 30.59 0.14 -1.62 16 17 C -0.12 -1.41 2.17 -10.79 -0.02 -1.43 16 18 C 0.45 7.74 2.69 71.98 0.19 7.93 16 19 F -0.19 -4.30 16.28 44.97 0.73 -3.57 16 20 F -0.19 -3.35 16.80 44.97 0.76 -2.60 16 21 F -0.19 -3.56 16.80 44.97 0.76 -2.81 16 22 C -0.12 -1.54 4.74 30.59 0.14 -1.39 16 23 C -0.09 -0.85 5.45 30.60 0.17 -0.69 16 24 H 0.27 15.30 8.31 -92.70 -0.77 14.53 16 25 H 0.07 2.54 8.14 -2.40 -0.02 2.52 16 26 H 0.07 2.57 8.14 -2.40 -0.02 2.55 16 27 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.09 1.95 7.14 -2.39 -0.02 1.93 16 30 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 0.87 6.92 -2.39 -0.02 0.85 16 33 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 1.42 6.57 -2.39 -0.02 1.40 16 35 H 0.08 1.05 7.80 -2.39 -0.02 1.03 16 36 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 37 H 0.09 0.92 7.80 -2.39 -0.02 0.90 16 38 H 0.07 1.18 6.57 -2.39 -0.02 1.17 16 39 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 40 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -68.34 353.71 6.32 -62.02 By element: Atomic # 1 Polarization: 8.38 SS G_CDS: 1.03 Total: 9.41 kcal Atomic # 6 Polarization: -37.07 SS G_CDS: 2.97 Total: -34.10 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: 0.29 Total: -54.99 kcal Atomic # 9 Polarization: -11.22 SS G_CDS: 2.24 Total: -8.97 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Atomic # 16 Polarization: -17.00 SS G_CDS: -2.24 Total: -19.25 kcal Total: -68.34 6.32 -62.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451039197.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.866 kcal (2) G-P(sol) polarization free energy of solvation -68.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds