Wall clock time and date at job start Tue Mar 31 2020 15:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 119.99971 * 2 1 4 4 C 1.38210 * 119.99859 * 179.83208 * 3 2 1 5 5 C 1.38254 * 120.00115 * 0.44225 * 4 3 2 6 6 S 1.76205 * 120.00031 * 179.78581 * 5 4 3 7 7 O 1.42102 * 106.40200 * 128.92924 * 6 5 4 8 8 O 1.42093 * 106.40044 * 356.00841 * 6 5 4 9 9 N 1.65602 * 107.21780 * 242.46676 * 6 5 4 10 10 C 1.46504 * 119.99901 * 62.33347 * 9 6 5 11 11 C 1.52997 * 109.47276 * 164.81162 * 10 9 6 12 12 C 1.52996 * 109.47647 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47706 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99646 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00138 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99824 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99698 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47628 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.47108 * 120.00398 * 17 15 13 20 20 H 1.48503 * 109.47015 * 240.00059 * 17 15 13 21 21 C 1.38211 * 120.00174 * 359.51245 * 5 4 3 22 22 N 1.48023 * 120.00352 * 180.24982 * 21 5 4 23 23 O 1.21801 * 119.99767 * 173.04482 * 22 21 5 24 24 O 1.21792 * 119.99760 * 353.04932 * 22 21 5 25 25 C 1.38208 * 120.00250 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.46987 * 269.97694 * 1 2 3 27 27 H 1.08991 * 109.46963 * 29.98068 * 1 2 3 28 28 H 1.09002 * 109.47022 * 149.97910 * 1 2 3 29 29 H 1.07995 * 119.99973 * 359.97438 * 3 2 1 30 30 H 1.08005 * 119.99897 * 180.22671 * 4 3 2 31 31 H 0.96994 * 120.00201 * 242.33194 * 9 6 5 32 32 H 1.09001 * 109.47275 * 284.81182 * 10 9 6 33 33 H 1.08996 * 109.47164 * 44.81316 * 10 9 6 34 34 H 1.08994 * 109.47327 * 300.00397 * 11 10 9 35 35 H 1.09010 * 109.46818 * 59.99869 * 11 10 9 36 36 H 1.09001 * 109.47092 * 300.01029 * 12 11 10 37 37 H 1.09010 * 109.46760 * 59.99658 * 12 11 10 38 38 H 0.97000 * 119.99553 * 180.02562 * 16 15 13 39 39 H 1.08005 * 119.99925 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0035 5 6 4.2717 0.0001 -0.0022 6 16 6.0338 0.0001 -0.0035 7 8 6.4358 -0.8611 1.0530 8 8 6.4349 1.3603 -0.0927 9 7 6.5230 -0.7250 -1.4096 10 6 6.1762 -0.1269 -2.7013 11 6 7.0403 -0.7492 -3.7999 12 6 6.6777 -0.1251 -5.1490 13 6 7.5292 -0.7376 -6.2310 14 1 8.2561 -1.4964 -5.9814 15 6 7.3804 -0.3292 -7.5394 16 7 6.4956 0.5953 -7.8431 17 14 8.4354 -1.0889 -8.8806 18 1 9.3457 -2.0983 -8.2824 19 1 7.5613 -1.7453 -9.8859 20 1 9.2377 -0.0275 -9.5402 21 6 3.5807 -1.1969 -0.0013 22 7 4.3208 -2.4788 -0.0018 23 8 3.7186 -3.5297 0.1267 24 8 5.5319 -2.4827 -0.1307 25 6 2.1981 -1.1969 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1327 0.0072 31 1 7.0391 -1.5455 -1.3781 32 1 5.1241 -0.3132 -2.9173 33 1 6.3546 0.9477 -2.6637 34 1 8.0922 -0.5629 -3.5840 35 1 6.8618 -1.8239 -3.8375 36 1 5.6256 -0.3117 -5.3646 37 1 6.8557 0.9497 -5.1116 38 1 6.3907 0.8823 -8.7637 39 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000507467871.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:18 Heat of formation + Delta-G solvation = -51.620762 kcal Electronic energy + Delta-G solvation = -26162.167477 eV Core-core repulsion = 22200.446502 eV Total energy + Delta-G solvation = -3961.720975 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.54114 -40.04777 -37.44320 -36.76578 -35.91994 -35.87939 -33.94952 -33.23977 -32.40861 -30.85437 -28.14710 -27.02793 -26.40187 -23.43385 -23.02879 -22.49375 -20.60373 -20.03480 -19.10825 -18.92880 -17.88150 -17.83171 -17.20241 -16.70713 -16.29547 -15.54604 -15.33464 -15.07798 -14.69588 -14.53792 -14.49216 -14.33490 -13.17972 -13.10763 -13.00388 -12.59922 -12.46168 -12.37016 -12.19523 -12.10873 -12.04747 -11.73535 -11.58119 -11.50898 -11.31100 -11.09958 -10.94087 -10.75828 -10.52475 -10.11281 -9.97140 -9.90797 -9.46870 -9.24283 -9.09186 -8.38457 -6.03627 -4.05720 -0.73756 0.10567 0.30657 0.96917 0.98802 2.53189 2.94625 3.30168 3.37844 3.42561 3.55198 3.73914 3.86972 4.16188 4.21412 4.44159 4.46389 4.67669 4.72806 4.91251 4.96466 5.04379 5.17127 5.32847 5.33064 5.33972 5.51427 5.60084 5.76327 5.91237 6.04652 6.08232 6.56736 6.77510 6.97726 7.17225 7.43648 7.61478 7.73515 7.95548 8.37813 9.01094 9.58764 11.07842 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.003357 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.887304 B = 8338.000006 C = 8801.409690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.035 4.035 3 C -0.093 4.093 4 C -0.012 4.012 5 C -0.637 4.637 6 S 2.698 3.302 7 O -0.942 6.942 8 O -0.953 6.953 9 N -1.095 6.095 10 C 0.111 3.889 11 C -0.115 4.115 12 C 0.021 3.979 13 C -0.519 4.519 14 H 0.057 0.943 15 C 0.056 3.944 16 N -0.896 5.896 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.051 3.949 22 N 0.016 4.984 23 O -0.138 6.138 24 O -0.135 6.135 25 C -0.073 4.073 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.153 0.847 30 H 0.168 0.832 31 H 0.427 0.573 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.016 0.984 37 H 0.020 0.980 38 H 0.260 0.740 39 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.755 0.908 18.798 23.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.036 4.036 3 C -0.112 4.112 4 C -0.032 4.032 5 C -0.718 4.718 6 S 2.781 3.219 7 O -0.932 6.932 8 O -0.943 6.943 9 N -0.860 5.860 10 C -0.014 4.014 11 C -0.154 4.154 12 C -0.017 4.017 13 C -0.558 4.558 14 H 0.076 0.924 15 C -0.145 4.145 16 N -0.536 5.536 17 Si 0.721 3.279 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.032 4.032 22 N 0.537 4.463 23 O -0.356 6.356 24 O -0.350 6.350 25 C -0.093 4.093 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.171 0.829 30 H 0.185 0.815 31 H 0.266 0.734 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.038 0.962 38 H 0.069 0.931 39 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -13.816 2.132 19.306 23.835 hybrid contribution 0.084 -1.201 -1.166 1.676 sum -13.732 0.931 18.140 22.770 Atomic orbital electron populations 1.20990 0.88587 1.04612 1.03770 1.20268 0.97619 0.91725 0.93965 1.21693 0.94218 0.98936 0.96316 1.21187 0.94713 0.96558 0.90692 1.31330 1.31161 0.96470 1.12878 1.02144 0.72682 0.73565 0.73525 1.93641 1.79651 1.66222 1.53640 1.93601 1.78972 1.35043 1.86644 1.55471 1.68823 1.41188 1.20525 1.21605 0.99280 0.98162 0.82353 1.21844 0.98544 0.99960 0.95084 1.19086 0.96985 0.96281 0.89307 1.21263 1.20454 1.21965 0.92105 0.92436 1.25023 0.95507 0.95111 0.98851 1.69970 1.34679 1.30118 1.18784 0.86520 0.80361 0.79178 0.81847 1.19658 1.21062 1.20995 1.20515 0.92716 0.82590 1.07342 1.43639 1.01312 1.02676 0.98690 1.94535 1.69928 1.19288 1.51891 1.94498 0.95703 1.92999 1.51843 1.21066 0.90865 1.00802 0.96518 0.89548 0.89893 0.90101 0.82908 0.81467 0.73432 0.93030 0.90464 0.92016 0.92410 0.96537 0.96178 0.93052 0.82148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.45 10.01 36.01 0.36 -0.09 16 2 C -0.03 -0.24 5.88 -104.62 -0.62 -0.86 16 3 C -0.09 -0.64 9.70 -39.58 -0.38 -1.02 16 4 C -0.01 -0.11 9.55 -39.59 -0.38 -0.49 16 5 C -0.64 -7.86 5.82 -39.59 -0.23 -8.09 16 6 S 2.70 39.27 4.90 -107.50 -0.53 38.74 16 7 O -0.94 -15.76 15.33 -67.25 -1.03 -16.79 16 8 O -0.95 -15.19 16.54 -57.17 -0.95 -16.14 16 9 N -1.09 -16.20 4.67 -10.61 -0.05 -16.25 16 10 C 0.11 1.83 6.19 -4.04 -0.03 1.80 16 11 C -0.11 -2.26 5.30 -26.73 -0.14 -2.40 16 12 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 13 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 14 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 15 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -26.51 13.29 55.43 0.74 -25.77 16 17 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 19 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C 0.05 0.64 6.80 -79.95 -0.54 0.10 16 22 N 0.02 0.24 4.45 33.96 0.15 0.39 16 23 O -0.14 -1.99 18.47 -29.46 -0.54 -2.54 16 24 O -0.14 -2.15 11.74 -37.29 -0.44 -2.59 16 25 C -0.07 -0.68 9.21 -39.58 -0.36 -1.04 16 26 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.08 0.21 8.08 -51.93 -0.42 -0.21 16 28 H 0.08 0.26 8.09 -51.93 -0.42 -0.16 16 29 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 30 H 0.17 1.33 7.34 -52.48 -0.39 0.94 16 31 H 0.43 5.97 7.46 -34.47 -0.26 5.71 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 1.24 7.81 -51.93 -0.41 0.84 16 34 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.06 1.11 8.14 -51.92 -0.42 0.69 16 36 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 38 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 39 H 0.16 1.18 7.63 -52.48 -0.40 0.78 16 LS Contribution 347.61 15.07 5.24 5.24 Total: -1.00 -35.10 347.61 -10.09 -45.19 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: -4.79 Total: -0.98 kcal Atomic # 6 Polarization: -22.12 SS G_CDS: -2.87 Total: -24.99 kcal Atomic # 7 Polarization: -42.48 SS G_CDS: 0.84 Total: -41.64 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -2.96 Total: -38.05 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Atomic # 16 Polarization: 39.27 SS G_CDS: -0.53 Total: 38.74 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -35.10 -10.09 -45.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507467871.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.431 kcal (2) G-P(sol) polarization free energy of solvation -35.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds