Wall clock time and date at job start Tue Mar 31 2020 15:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38261 * 119.99971 * 2 1 4 4 C 1.38210 * 119.99859 * 179.83208 * 3 2 1 5 5 C 1.38254 * 120.00115 * 0.44225 * 4 3 2 6 6 S 1.76205 * 120.00031 * 179.78581 * 5 4 3 7 7 O 1.42102 * 106.40200 * 128.92924 * 6 5 4 8 8 O 1.42093 * 106.40044 * 356.00841 * 6 5 4 9 9 N 1.65602 * 107.21780 * 242.46676 * 6 5 4 10 10 C 1.46504 * 119.99901 * 62.33347 * 9 6 5 11 11 C 1.52997 * 109.47276 * 164.81162 * 10 9 6 12 12 C 1.52996 * 109.47647 * 179.97438 * 11 10 9 13 13 C 1.50697 * 109.47706 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99646 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00138 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99824 * 0.02562 * 15 13 12 17 17 Si 1.86793 * 119.99698 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47628 * 0.02562 * 17 15 13 19 19 H 1.48509 * 109.47108 * 120.00398 * 17 15 13 20 20 H 1.48503 * 109.47015 * 240.00059 * 17 15 13 21 21 C 1.38211 * 120.00174 * 359.51245 * 5 4 3 22 22 N 1.48023 * 120.00352 * 180.24982 * 21 5 4 23 23 O 1.21801 * 119.99767 * 173.04482 * 22 21 5 24 24 O 1.21792 * 119.99760 * 353.04932 * 22 21 5 25 25 C 1.38208 * 120.00250 * 180.02562 * 2 1 3 26 26 H 1.08999 * 109.46987 * 269.97694 * 1 2 3 27 27 H 1.08991 * 109.46963 * 29.98068 * 1 2 3 28 28 H 1.09002 * 109.47022 * 149.97910 * 1 2 3 29 29 H 1.07995 * 119.99973 * 359.97438 * 3 2 1 30 30 H 1.08005 * 119.99897 * 180.22671 * 4 3 2 31 31 H 0.96994 * 120.00201 * 242.33194 * 9 6 5 32 32 H 1.09001 * 109.47275 * 284.81182 * 10 9 6 33 33 H 1.08996 * 109.47164 * 44.81316 * 10 9 6 34 34 H 1.08994 * 109.47327 * 300.00397 * 11 10 9 35 35 H 1.09010 * 109.46818 * 59.99869 * 11 10 9 36 36 H 1.09001 * 109.47092 * 300.01029 * 12 11 10 37 37 H 1.09010 * 109.46760 * 59.99658 * 12 11 10 38 38 H 0.97000 * 119.99553 * 180.02562 * 16 15 13 39 39 H 1.08005 * 119.99925 * 359.97438 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0035 5 6 4.2717 0.0001 -0.0022 6 16 6.0338 0.0001 -0.0035 7 8 6.4358 -0.8611 1.0530 8 8 6.4349 1.3603 -0.0927 9 7 6.5230 -0.7250 -1.4096 10 6 6.1762 -0.1269 -2.7013 11 6 7.0403 -0.7492 -3.7999 12 6 6.6777 -0.1251 -5.1490 13 6 7.5292 -0.7376 -6.2310 14 1 8.2561 -1.4964 -5.9814 15 6 7.3804 -0.3292 -7.5394 16 7 6.4956 0.5953 -7.8431 17 14 8.4354 -1.0889 -8.8806 18 1 9.3457 -2.0983 -8.2824 19 1 7.5613 -1.7453 -9.8859 20 1 9.2377 -0.0275 -9.5402 21 6 3.5807 -1.1969 -0.0013 22 7 4.3208 -2.4788 -0.0018 23 8 3.7186 -3.5297 0.1267 24 8 5.5319 -2.4827 -0.1307 25 6 2.1981 -1.1969 -0.0005 26 1 -0.3633 -0.0004 1.0277 27 1 -0.3633 0.8901 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 1.6583 2.1326 -0.0004 30 1 4.1204 2.1327 0.0072 31 1 7.0391 -1.5455 -1.3781 32 1 5.1241 -0.3132 -2.9173 33 1 6.3546 0.9477 -2.6637 34 1 8.0922 -0.5629 -3.5840 35 1 6.8618 -1.8239 -3.8375 36 1 5.6256 -0.3117 -5.3646 37 1 6.8557 0.9497 -5.1116 38 1 6.3907 0.8823 -8.7637 39 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000507467871.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:17 Heat of formation + Delta-G solvation = -74.808392 kcal Electronic energy + Delta-G solvation = -26163.172968 eV Core-core repulsion = 22200.446502 eV Total energy + Delta-G solvation = -3962.726466 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.56264 -40.76393 -38.61830 -37.91912 -37.33712 -37.09724 -35.18592 -34.57947 -33.16557 -32.65275 -28.65554 -28.23912 -27.94513 -24.86007 -24.10562 -23.34607 -22.25309 -21.08054 -20.15331 -19.98692 -18.88858 -18.82820 -18.57874 -18.28539 -17.52492 -16.65948 -16.43685 -16.23580 -15.95493 -15.77998 -15.59521 -15.11495 -14.34221 -14.11690 -13.85984 -13.77932 -13.57561 -13.42772 -13.37135 -13.33439 -13.24376 -12.99949 -12.87790 -12.80120 -12.56191 -12.47024 -12.40030 -12.28769 -12.14790 -11.71606 -11.41989 -11.15978 -10.82750 -10.59738 -10.54645 -10.47318 -8.19873 -6.29645 -1.65179 -0.85071 -0.55873 0.05576 0.07588 1.40845 1.41844 1.54713 1.71636 1.94295 2.42140 2.48024 2.91433 3.14145 3.25246 3.45303 3.62916 3.68636 3.85133 3.96294 4.14624 4.18643 4.31971 4.45414 4.56158 4.58156 4.63040 4.75006 4.87038 4.92616 5.05306 5.09472 5.15505 5.19213 5.35661 5.53416 5.73145 5.85284 6.00264 6.25551 6.30572 6.86538 7.39356 8.92110 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.013770 B = 0.003357 C = 0.003181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2032.887304 B = 8338.000006 C = 8801.409690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.022 4.022 3 C -0.079 4.079 4 C -0.017 4.017 5 C -0.657 4.657 6 S 2.712 3.288 7 O -0.970 6.970 8 O -0.974 6.974 9 N -1.096 6.096 10 C 0.122 3.878 11 C -0.105 4.105 12 C 0.024 3.976 13 C -0.542 4.542 14 H 0.059 0.941 15 C 0.001 3.999 16 N -0.931 5.931 17 Si 0.962 3.038 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.278 1.278 21 C 0.024 3.976 22 N 0.015 4.985 23 O -0.135 6.135 24 O -0.178 6.178 25 C -0.072 4.072 26 H 0.105 0.895 27 H 0.102 0.898 28 H 0.086 0.914 29 H 0.197 0.803 30 H 0.180 0.820 31 H 0.429 0.571 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.063 0.937 35 H 0.060 0.940 36 H -0.002 1.002 37 H 0.000 1.000 38 H 0.264 0.736 39 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.996 1.446 18.981 24.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.023 4.023 3 C -0.097 4.097 4 C -0.037 4.037 5 C -0.743 4.743 6 S 2.800 3.200 7 O -0.960 6.960 8 O -0.964 6.964 9 N -0.860 5.860 10 C -0.004 4.004 11 C -0.144 4.144 12 C -0.014 4.014 13 C -0.581 4.581 14 H 0.078 0.922 15 C -0.196 4.196 16 N -0.571 5.571 17 Si 0.787 3.213 18 H -0.188 1.188 19 H -0.204 1.204 20 H -0.204 1.204 21 C -0.059 4.059 22 N 0.531 4.469 23 O -0.357 6.357 24 O -0.385 6.385 25 C -0.092 4.092 26 H 0.123 0.877 27 H 0.120 0.880 28 H 0.105 0.895 29 H 0.215 0.785 30 H 0.197 0.803 31 H 0.268 0.732 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.017 0.983 37 H 0.018 0.982 38 H 0.072 0.928 39 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -15.936 2.672 19.490 25.317 hybrid contribution 0.532 -1.306 -1.171 1.833 sum -15.405 1.366 18.319 23.974 Atomic orbital electron populations 1.21146 0.85575 1.05925 1.05240 1.20781 0.99506 0.90672 0.91388 1.22235 0.93052 1.00834 0.93575 1.21558 0.96262 0.95823 0.90054 1.30844 1.29247 0.97803 1.16387 1.01301 0.73443 0.72573 0.72727 1.93600 1.81098 1.66833 1.54440 1.93567 1.80315 1.35747 1.86764 1.55342 1.69544 1.41168 1.19981 1.21354 0.99039 0.97983 0.82018 1.21617 0.99254 0.99909 0.93588 1.18980 0.95531 0.95251 0.91652 1.21712 1.20877 1.22177 0.93287 0.92229 1.25918 0.96782 0.95545 1.01398 1.70083 1.36163 1.31370 1.19526 0.85436 0.78677 0.78470 0.78685 1.18813 1.20397 1.20397 1.20704 0.93746 0.81164 1.10272 1.44014 1.01292 1.03550 0.98065 1.94486 1.69687 1.20366 1.51210 1.94488 0.96634 1.93357 1.53989 1.21496 0.89530 1.02773 0.95390 0.87709 0.87980 0.89483 0.78541 0.80311 0.73209 0.92122 0.90273 0.91840 0.92088 0.98329 0.98155 0.92767 0.80514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.29 10.01 71.24 0.71 0.42 16 2 C -0.02 -0.22 5.88 -19.86 -0.12 -0.34 16 3 C -0.08 -0.76 9.70 22.27 0.22 -0.55 16 4 C -0.02 -0.29 9.55 22.27 0.21 -0.08 16 5 C -0.66 -15.92 5.82 22.27 0.13 -15.79 16 6 S 2.71 81.28 4.90 -56.49 -0.28 81.00 16 7 O -0.97 -33.99 15.33 -118.37 -1.81 -35.80 16 8 O -0.97 -31.60 16.54 -128.00 -2.12 -33.71 16 9 N -1.10 -33.54 4.67 -187.49 -0.88 -34.41 16 10 C 0.12 4.06 6.19 86.38 0.53 4.60 16 11 C -0.10 -4.19 5.30 30.59 0.16 -4.03 16 12 C 0.02 1.22 4.97 29.85 0.15 1.37 16 13 C -0.54 -30.58 9.11 25.60 0.23 -30.35 16 14 H 0.06 3.25 7.74 -2.91 -0.02 3.23 16 15 C 0.00 0.08 5.46 84.65 0.46 0.54 16 16 N -0.93 -55.67 13.29 21.45 0.28 -55.39 16 17 Si 0.96 44.11 29.54 68.60 2.03 46.13 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 21 C 0.02 0.59 6.80 36.37 0.25 0.84 16 22 N 0.01 0.44 4.45 -46.46 -0.21 0.23 16 23 O -0.14 -3.94 18.47 18.88 0.35 -3.59 16 24 O -0.18 -5.95 11.74 26.39 0.31 -5.64 16 25 C -0.07 -1.18 9.21 22.27 0.21 -0.97 16 26 H 0.10 -0.02 8.14 -2.39 -0.02 -0.04 16 27 H 0.10 -0.06 8.08 -2.39 -0.02 -0.08 16 28 H 0.09 0.18 8.09 -2.39 -0.02 0.16 16 29 H 0.20 0.18 8.06 -2.91 -0.02 0.16 16 30 H 0.18 2.51 7.34 -2.91 -0.02 2.49 16 31 H 0.43 12.65 7.46 -96.75 -0.72 11.93 16 32 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.08 2.59 7.81 -2.39 -0.02 2.57 16 34 H 0.06 2.49 8.14 -2.39 -0.02 2.48 16 35 H 0.06 2.38 8.14 -2.38 -0.02 2.36 16 36 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 37 H 0.00 0.00 8.14 -2.38 -0.02 -0.02 16 38 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 39 H 0.18 2.19 7.63 -2.91 -0.02 2.16 16 Total: -1.00 -77.90 347.61 1.19 -76.71 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: 0.37 Total: 8.79 kcal Atomic # 6 Polarization: -47.48 SS G_CDS: 3.15 Total: -44.33 kcal Atomic # 7 Polarization: -88.77 SS G_CDS: -0.80 Total: -89.56 kcal Atomic # 8 Polarization: -75.47 SS G_CDS: -3.27 Total: -78.74 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 81.28 SS G_CDS: -0.28 Total: 81.00 kcal Total: -77.90 1.19 -76.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000507467871.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.899 kcal (2) G-P(sol) polarization free energy of solvation -77.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds