Wall clock time and date at job start Tue Mar 31 2020 14:46:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29464 * 1 3 3 Si 1.86797 * 120.00342 * 2 1 4 4 H 1.48496 * 109.47039 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47093 * 119.99894 * 3 2 1 6 6 H 1.48502 * 109.47202 * 240.00073 * 3 2 1 7 7 C 1.46649 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99549 * 155.11038 * 7 2 1 9 9 C 1.39563 * 119.99950 * 335.11196 * 7 2 1 10 10 C 1.41621 * 120.65742 * 335.07961 * 9 7 2 11 11 C 1.35930 * 119.84706 * 179.97438 * 10 9 7 12 12 C 1.39153 * 121.30505 * 0.02562 * 11 10 9 13 13 C 1.37866 * 121.38126 * 359.97438 * 12 11 10 14 14 C 1.39030 * 120.03121 * 359.72415 * 13 12 11 15 15 N 1.38090 * 120.62767 * 180.25977 * 14 13 12 16 16 C 1.34776 * 120.00523 * 325.38574 * 15 14 13 17 17 O 1.21531 * 119.99389 * 4.39801 * 16 15 14 18 18 C 1.47797 * 120.00167 * 184.40254 * 16 15 14 19 19 C 1.39641 * 120.11943 * 359.71813 * 18 16 15 20 20 C 1.37957 * 119.95599 * 179.74746 * 19 18 16 21 21 C 1.38292 * 120.21377 * 0.53238 * 20 19 18 22 22 N 1.48016 * 119.87690 * 179.76279 * 21 20 19 23 23 O 1.31698 * 120.00231 * 359.97438 * 22 21 20 24 24 O 1.31697 * 119.99690 * 179.97438 * 22 21 20 25 25 C 1.38816 * 120.24322 * 359.74411 * 21 20 19 26 26 O 1.35909 * 119.98265 * 179.97438 * 25 21 20 27 27 C 1.38487 * 120.03651 * 359.97438 * 25 21 20 28 28 H 0.97003 * 120.00332 * 174.69899 * 1 2 3 29 29 H 1.08000 * 120.07459 * 359.95977 * 10 9 7 30 30 H 1.08000 * 119.34570 * 179.97438 * 11 10 9 31 31 H 1.08000 * 119.31155 * 179.97438 * 12 11 10 32 32 H 1.08004 * 119.98348 * 179.97438 * 13 12 11 33 33 H 0.97009 * 119.99535 * 145.38258 * 15 14 13 34 34 H 1.07997 * 120.02141 * 0.02805 * 19 18 16 35 35 H 1.08001 * 119.88873 * 180.25393 * 20 19 18 36 36 H 0.96698 * 114.00149 * 269.97802 * 26 25 21 37 37 H 1.07997 * 120.10811 * 180.02562 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2287 1.6177 0.0000 4 1 1.2638 2.7464 0.0006 5 1 3.0824 1.6963 1.2125 6 1 3.0825 1.6963 -1.2125 7 6 2.0278 -1.2701 -0.0006 8 1 3.0325 -1.3133 -0.3942 9 6 1.4271 -2.4228 0.5076 10 6 0.3911 -2.3334 1.4689 11 6 -0.1829 -3.4668 1.9524 12 6 0.2270 -4.7250 1.5221 13 6 1.2305 -4.8727 0.5884 14 6 1.8522 -3.7510 0.0517 15 7 2.8551 -3.8845 -0.8882 16 6 3.7102 -4.9238 -0.8183 17 8 3.5508 -5.7863 0.0230 18 6 4.8419 -5.0147 -1.7647 19 6 5.0240 -4.0281 -2.7360 20 6 6.0844 -4.1135 -3.6143 21 6 6.9626 -5.1794 -3.5435 22 7 8.0948 -5.2663 -4.4929 23 8 8.2642 -4.3299 -5.4033 24 8 8.9328 -6.2802 -4.4273 25 6 6.7864 -6.1680 -2.5850 26 8 7.6523 -7.2135 -2.5205 27 6 5.7287 -6.0895 -1.6945 28 1 -0.4851 -0.8365 -0.0776 29 1 0.0579 -1.3669 1.8173 30 1 -0.9720 -3.3892 2.6856 31 1 -0.2510 -5.6043 1.9280 32 1 1.5311 -5.8603 0.2707 33 1 2.9440 -3.2302 -1.5988 34 1 4.3377 -3.1964 -2.7967 35 1 6.2266 -3.3477 -4.3624 36 1 7.3955 -7.9710 -3.0639 37 1 5.5907 -6.8577 -0.9481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549715371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:26 Heat of formation + Delta-G solvation = -5.101443 kcal Electronic energy + Delta-G solvation = -26358.391996 eV Core-core repulsion = 22263.244299 eV Total energy + Delta-G solvation = -4095.147697 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 2.67 seconds Orbital eigenvalues (eV) -41.14071 -39.78167 -38.48235 -37.55814 -36.97148 -34.52209 -34.36162 -33.98300 -32.28993 -30.78225 -29.70535 -28.81876 -27.05548 -25.05082 -23.69033 -23.44154 -21.79508 -21.11846 -20.10489 -19.34070 -18.51266 -18.37654 -18.21143 -17.40824 -16.64912 -16.30285 -15.72949 -15.46673 -15.06715 -14.93549 -14.76410 -14.57684 -14.33817 -13.78927 -13.51680 -12.97055 -12.78793 -12.46522 -12.46036 -12.07335 -11.75357 -11.63558 -11.52237 -11.22824 -11.10520 -10.93616 -10.85138 -10.63567 -10.51761 -9.99974 -9.96187 -9.67785 -9.58455 -9.43674 -9.16793 -7.88072 -7.73115 -7.12928 -4.65806 -1.07453 0.41414 0.51729 0.84522 2.21001 2.58126 2.73491 2.92708 3.07168 3.12238 3.14350 3.35223 3.52882 3.67218 3.88703 4.21797 4.24499 4.37150 4.51452 4.60704 5.08356 5.17573 5.25830 5.28798 5.51280 5.58530 5.84293 6.07174 6.10556 6.37408 6.53312 6.57576 6.75513 6.92518 6.96050 7.11276 7.27931 7.35867 7.53937 7.68929 7.89204 7.96960 8.08391 8.35745 8.43425 8.69848 9.55536 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.003324 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.414434 B = 8420.736021 C =10244.335364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.754 5.754 2 C 0.039 3.961 3 Si 1.071 2.929 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.102 3.898 10 C -0.231 4.231 11 C -0.073 4.073 12 C -0.265 4.265 13 C -0.053 4.053 14 C -0.038 4.038 15 N -0.606 5.606 16 C 0.523 3.477 17 O -0.523 6.523 18 C -0.039 4.039 19 C -0.103 4.103 20 C -0.040 4.040 21 C -0.028 4.028 22 N -0.016 5.016 23 O -0.184 6.184 24 O -0.149 6.149 25 C 0.181 3.819 26 O -0.469 6.469 27 C -0.098 4.098 28 H 0.308 0.692 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.401 0.599 34 H 0.158 0.842 35 H 0.166 0.834 36 H 0.407 0.593 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.039 -4.875 -6.980 11.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.373 5.373 2 C -0.191 4.191 3 Si 0.893 3.107 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.540 4.540 8 H 0.097 0.903 9 C 0.098 3.902 10 C -0.251 4.251 11 C -0.092 4.092 12 C -0.284 4.284 13 C -0.073 4.073 14 C -0.132 4.132 15 N -0.247 5.247 16 C 0.309 3.691 17 O -0.402 6.402 18 C -0.043 4.043 19 C -0.122 4.122 20 C -0.059 4.059 21 C -0.116 4.116 22 N 0.463 4.537 23 O -0.372 6.372 24 O -0.347 6.347 25 C 0.133 3.867 26 O -0.281 6.281 27 C -0.118 4.118 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.126 0.874 33 H 0.237 0.763 34 H 0.176 0.824 35 H 0.183 0.817 36 H 0.267 0.733 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 6.456 -3.430 -5.575 9.194 hybrid contribution 0.344 -1.696 -0.886 1.944 sum 6.800 -5.126 -6.461 10.689 Atomic orbital electron populations 1.69952 1.08897 1.35412 1.23050 1.28699 0.95309 1.04532 0.90569 0.83548 0.75750 0.72815 0.78565 1.19491 1.19502 1.19602 1.21555 1.02209 0.93325 1.36890 0.90265 1.18377 0.91981 0.89877 0.90011 1.20695 1.04126 0.97179 1.03075 1.20280 0.97781 0.93135 0.97972 1.20086 1.05080 0.95760 1.07503 1.20589 0.93974 0.96381 0.96392 1.18523 0.98929 0.93949 1.01788 1.42358 1.28158 1.25598 1.28543 1.17981 0.82143 0.84264 0.84668 1.90771 1.73499 1.39136 1.36787 1.20611 0.95531 0.93668 0.94533 1.21509 0.97586 0.99371 0.93771 1.21009 0.90943 0.95469 0.98453 1.21083 0.92233 1.02785 0.95490 1.50277 1.01523 1.01272 1.00612 1.96285 1.81377 1.30809 1.28777 1.96290 1.39034 1.20669 1.78696 1.18049 0.88804 0.88708 0.91131 1.84876 1.46408 1.25944 1.70854 1.21651 0.91328 0.99607 0.99206 0.87633 0.87673 0.89446 0.89268 0.87353 0.76267 0.82436 0.81699 0.73299 0.81406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 46. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -17.26 12.33 55.99 0.69 -16.57 16 2 C 0.04 0.84 5.13 -15.16 -0.08 0.76 16 3 Si 1.07 18.36 30.09 -169.99 -5.11 13.25 16 4 H -0.27 -4.67 7.11 56.52 0.40 -4.26 16 5 H -0.27 -4.59 7.11 56.52 0.40 -4.19 16 6 H -0.27 -4.30 7.11 56.52 0.40 -3.90 16 7 C -0.51 -11.54 8.73 -35.69 -0.31 -11.85 16 8 H 0.08 1.66 7.59 -52.49 -0.40 1.27 16 9 C 0.10 2.39 5.52 -104.69 -0.58 1.81 16 10 C -0.23 -5.45 7.96 -39.12 -0.31 -5.77 16 11 C -0.07 -1.62 9.91 -40.07 -0.40 -2.01 16 12 C -0.26 -5.84 9.99 -39.38 -0.39 -6.23 16 13 C -0.05 -1.20 8.69 -39.42 -0.34 -1.54 16 14 C -0.04 -0.84 6.50 -81.33 -0.53 -1.37 16 15 N -0.61 -10.83 4.89 -9.09 -0.04 -10.87 16 16 C 0.52 8.76 7.61 -12.35 -0.09 8.66 16 17 O -0.52 -10.45 13.75 5.34 0.07 -10.38 16 18 C -0.04 -0.49 5.87 -104.99 -0.62 -1.10 16 19 C -0.10 -1.02 9.54 -39.16 -0.37 -1.39 16 20 C -0.04 -0.38 9.56 -39.66 -0.38 -0.76 16 21 C -0.03 -0.32 6.90 -79.71 -0.55 -0.87 16 22 N -0.02 -0.21 4.98 34.08 0.17 -0.04 16 23 O -0.18 -2.62 19.14 -31.57 -0.60 -3.22 16 24 O -0.15 -2.10 17.86 -39.25 -0.70 -2.80 16 25 C 0.18 1.93 6.68 -39.28 -0.26 1.67 16 26 O -0.47 -4.54 11.39 -41.69 -0.47 -5.02 16 27 C -0.10 -1.10 9.53 -39.01 -0.37 -1.47 16 28 H 0.31 7.29 6.68 -40.82 -0.27 7.01 16 29 H 0.11 2.52 6.47 -52.49 -0.34 2.18 16 30 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.11 2.38 6.21 -52.48 -0.33 2.05 16 33 H 0.40 6.08 6.16 -40.82 -0.25 5.83 16 34 H 0.16 1.29 6.41 -52.49 -0.34 0.95 16 35 H 0.17 1.30 7.56 -52.49 -0.40 0.90 16 36 H 0.41 2.05 9.06 45.56 0.41 2.46 16 37 H 0.17 1.85 7.65 -52.49 -0.40 1.45 16 LS Contribution 333.81 15.07 5.03 5.03 Total: -1.00 -29.18 333.81 -8.51 -37.69 By element: Atomic # 1 Polarization: 16.35 SS G_CDS: -1.95 Total: 14.40 kcal Atomic # 6 Polarization: -15.88 SS G_CDS: -5.59 Total: -21.47 kcal Atomic # 7 Polarization: -28.30 SS G_CDS: 0.82 Total: -27.49 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: -1.71 Total: -21.41 kcal Atomic # 14 Polarization: 18.36 SS G_CDS: -5.11 Total: 13.25 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.18 -8.51 -37.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549715371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.591 kcal (2) G-P(sol) polarization free energy of solvation -29.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.67 seconds