Wall clock time and date at job start Tue Mar 31 2020 14:46:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29464 * 1 3 3 Si 1.86797 * 120.00342 * 2 1 4 4 H 1.48496 * 109.47039 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47093 * 119.99894 * 3 2 1 6 6 H 1.48502 * 109.47202 * 240.00073 * 3 2 1 7 7 C 1.46649 * 119.99631 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99549 * 155.11038 * 7 2 1 9 9 C 1.39563 * 119.99950 * 335.11196 * 7 2 1 10 10 C 1.41621 * 120.65742 * 335.07961 * 9 7 2 11 11 C 1.35930 * 119.84706 * 179.97438 * 10 9 7 12 12 C 1.39153 * 121.30505 * 0.02562 * 11 10 9 13 13 C 1.37866 * 121.38126 * 359.97438 * 12 11 10 14 14 C 1.39030 * 120.03121 * 359.72415 * 13 12 11 15 15 N 1.38090 * 120.62767 * 180.25977 * 14 13 12 16 16 C 1.34776 * 120.00523 * 325.38574 * 15 14 13 17 17 O 1.21531 * 119.99389 * 4.39801 * 16 15 14 18 18 C 1.47797 * 120.00167 * 184.40254 * 16 15 14 19 19 C 1.39641 * 120.11943 * 359.71813 * 18 16 15 20 20 C 1.37957 * 119.95599 * 179.74746 * 19 18 16 21 21 C 1.38292 * 120.21377 * 0.53238 * 20 19 18 22 22 N 1.48016 * 119.87690 * 179.76279 * 21 20 19 23 23 O 1.31698 * 120.00231 * 359.97438 * 22 21 20 24 24 O 1.31697 * 119.99690 * 179.97438 * 22 21 20 25 25 C 1.38816 * 120.24322 * 359.74411 * 21 20 19 26 26 O 1.35909 * 119.98265 * 179.97438 * 25 21 20 27 27 C 1.38487 * 120.03651 * 359.97438 * 25 21 20 28 28 H 0.97003 * 120.00332 * 174.69899 * 1 2 3 29 29 H 1.08000 * 120.07459 * 359.95977 * 10 9 7 30 30 H 1.08000 * 119.34570 * 179.97438 * 11 10 9 31 31 H 1.08000 * 119.31155 * 179.97438 * 12 11 10 32 32 H 1.08004 * 119.98348 * 179.97438 * 13 12 11 33 33 H 0.97009 * 119.99535 * 145.38258 * 15 14 13 34 34 H 1.07997 * 120.02141 * 0.02805 * 19 18 16 35 35 H 1.08001 * 119.88873 * 180.25393 * 20 19 18 36 36 H 0.96698 * 114.00149 * 269.97802 * 26 25 21 37 37 H 1.07997 * 120.10811 * 180.02562 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2946 0.0000 0.0000 3 14 2.2287 1.6177 0.0000 4 1 1.2638 2.7464 0.0006 5 1 3.0824 1.6963 1.2125 6 1 3.0825 1.6963 -1.2125 7 6 2.0278 -1.2701 -0.0006 8 1 3.0325 -1.3133 -0.3942 9 6 1.4271 -2.4228 0.5076 10 6 0.3911 -2.3334 1.4689 11 6 -0.1829 -3.4668 1.9524 12 6 0.2270 -4.7250 1.5221 13 6 1.2305 -4.8727 0.5884 14 6 1.8522 -3.7510 0.0517 15 7 2.8551 -3.8845 -0.8882 16 6 3.7102 -4.9238 -0.8183 17 8 3.5508 -5.7863 0.0230 18 6 4.8419 -5.0147 -1.7647 19 6 5.0240 -4.0281 -2.7360 20 6 6.0844 -4.1135 -3.6143 21 6 6.9626 -5.1794 -3.5435 22 7 8.0948 -5.2663 -4.4929 23 8 8.2642 -4.3299 -5.4033 24 8 8.9328 -6.2802 -4.4273 25 6 6.7864 -6.1680 -2.5850 26 8 7.6523 -7.2135 -2.5205 27 6 5.7287 -6.0895 -1.6945 28 1 -0.4851 -0.8365 -0.0776 29 1 0.0579 -1.3669 1.8173 30 1 -0.9720 -3.3892 2.6856 31 1 -0.2510 -5.6043 1.9280 32 1 1.5311 -5.8603 0.2707 33 1 2.9440 -3.2302 -1.5988 34 1 4.3377 -3.1964 -2.7967 35 1 6.2266 -3.3477 -4.3624 36 1 7.3955 -7.9710 -3.0639 37 1 5.5907 -6.8577 -0.9481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000549715371.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:25 Heat of formation + Delta-G solvation = -21.655325 kcal Electronic energy + Delta-G solvation = -26359.109827 eV Core-core repulsion = 22263.244299 eV Total energy + Delta-G solvation = -4095.865527 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.16111 -41.06948 -39.53049 -38.94406 -38.05584 -35.90990 -35.62451 -35.55526 -33.29949 -31.70112 -31.41151 -30.35101 -28.20363 -26.68818 -24.87230 -24.30868 -23.18940 -22.71174 -21.47290 -20.40958 -19.98905 -19.44631 -19.31650 -18.60971 -17.92191 -17.28413 -16.85859 -16.70405 -16.45240 -16.31051 -16.02025 -15.72060 -15.47813 -15.10543 -14.76582 -14.44351 -14.19588 -13.84780 -13.78312 -13.29042 -13.23757 -12.71927 -12.67138 -12.56637 -12.50692 -12.19588 -12.02898 -11.95590 -11.92532 -11.61053 -11.21795 -11.02926 -10.93007 -10.76995 -10.39981 -9.64136 -9.43731 -8.81369 -6.39398 -2.09206 -0.51260 -0.38020 -0.12295 0.75140 0.99136 1.41670 1.54601 1.66559 1.82321 1.95761 2.22686 2.26320 2.52544 2.60156 3.04096 3.28395 3.41449 3.49585 3.51973 3.77680 4.20225 4.30316 4.33635 4.41314 4.42481 4.58256 4.69577 4.75225 4.91158 4.99185 5.01514 5.30700 5.38315 5.47024 5.58266 5.70068 5.86122 5.99967 6.15577 6.32825 6.34021 6.47126 6.69053 6.86419 7.14957 7.83058 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.013508 B = 0.003324 C = 0.002733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.414434 B = 8420.736021 C =10244.335364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.773 5.773 2 C 0.011 3.989 3 Si 1.119 2.881 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.243 1.243 7 C -0.529 4.529 8 H 0.092 0.908 9 C 0.076 3.924 10 C -0.255 4.255 11 C -0.080 4.080 12 C -0.275 4.275 13 C -0.070 4.070 14 C -0.038 4.038 15 N -0.608 5.608 16 C 0.530 3.470 17 O -0.557 6.557 18 C -0.046 4.046 19 C -0.088 4.088 20 C -0.025 4.025 21 C -0.034 4.034 22 N -0.014 5.014 23 O -0.196 6.196 24 O -0.164 6.164 25 C 0.193 3.807 26 O -0.476 6.476 27 C -0.094 4.094 28 H 0.295 0.705 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.414 0.586 34 H 0.179 0.821 35 H 0.189 0.811 36 H 0.427 0.573 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.526 -4.324 -8.209 12.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C -0.214 4.214 3 Si 0.935 3.065 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.167 1.167 7 C -0.555 4.555 8 H 0.110 0.890 9 C 0.072 3.928 10 C -0.274 4.274 11 C -0.099 4.099 12 C -0.294 4.294 13 C -0.090 4.090 14 C -0.132 4.132 15 N -0.250 5.250 16 C 0.318 3.682 17 O -0.437 6.437 18 C -0.050 4.050 19 C -0.107 4.107 20 C -0.044 4.044 21 C -0.122 4.122 22 N 0.462 4.538 23 O -0.384 6.384 24 O -0.360 6.360 25 C 0.145 3.855 26 O -0.292 6.292 27 C -0.114 4.114 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.125 0.875 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.252 0.748 34 H 0.196 0.804 35 H 0.206 0.794 36 H 0.291 0.709 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 7.963 -2.919 -6.850 10.902 hybrid contribution -0.059 -2.016 -0.526 2.085 sum 7.904 -4.935 -7.376 11.885 Atomic orbital electron populations 1.70053 1.09738 1.34540 1.24820 1.30009 0.95242 1.07210 0.88957 0.82985 0.74868 0.69004 0.79677 1.19892 1.19300 1.16693 1.21801 1.02748 0.93614 1.37290 0.88997 1.18701 0.92512 0.91018 0.90565 1.20724 1.05403 0.97094 1.04213 1.20496 0.98206 0.92870 0.98315 1.20357 1.05138 0.96370 1.07572 1.20757 0.94530 0.96638 0.97109 1.18635 0.99350 0.93348 1.01900 1.42298 1.27852 1.26522 1.28342 1.18499 0.82363 0.82784 0.84523 1.90751 1.74423 1.40185 1.38391 1.20225 0.94459 0.95384 0.94919 1.21636 0.97650 0.98933 0.92484 1.21231 0.89751 0.95150 0.98242 1.21342 0.91946 1.03612 0.95288 1.50488 1.01750 1.00922 1.00617 1.96281 1.81723 1.30962 1.29428 1.96291 1.39766 1.20959 1.79027 1.17929 0.88285 0.88883 0.90410 1.84832 1.46280 1.26578 1.71518 1.21598 0.91244 0.99300 0.99271 0.89134 0.88899 0.87501 0.87521 0.87258 0.74753 0.80390 0.79395 0.70917 0.81449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -35.79 12.33 23.23 0.29 -35.50 16 2 C 0.01 0.47 5.13 87.24 0.45 0.92 16 3 Si 1.12 35.47 30.09 68.60 2.06 37.53 16 4 H -0.27 -8.81 7.11 99.48 0.71 -8.10 16 5 H -0.27 -8.39 7.11 99.48 0.71 -7.68 16 6 H -0.24 -6.64 7.11 99.48 0.71 -5.94 16 7 C -0.53 -23.53 8.73 24.79 0.22 -23.32 16 8 H 0.09 3.72 7.59 -2.91 -0.02 3.70 16 9 C 0.08 3.62 5.52 -19.91 -0.11 3.51 16 10 C -0.25 -12.32 7.96 22.57 0.18 -12.14 16 11 C -0.08 -3.61 9.91 21.95 0.22 -3.39 16 12 C -0.27 -12.19 9.99 22.40 0.22 -11.97 16 13 C -0.07 -3.17 8.69 22.37 0.19 -2.98 16 14 C -0.04 -1.67 6.50 40.56 0.26 -1.40 16 15 N -0.61 -21.15 4.89 -300.96 -1.47 -22.62 16 16 C 0.53 17.18 7.61 86.77 0.66 17.84 16 17 O -0.56 -22.09 13.75 -3.81 -0.05 -22.14 16 18 C -0.05 -1.04 5.87 -20.10 -0.12 -1.16 16 19 C -0.09 -1.46 9.54 22.54 0.21 -1.24 16 20 C -0.02 -0.39 9.56 22.22 0.21 -0.18 16 21 C -0.03 -0.68 6.90 36.53 0.25 -0.43 16 22 N -0.01 -0.34 4.98 -46.10 -0.23 -0.57 16 23 O -0.20 -5.18 19.14 3.52 0.07 -5.11 16 24 O -0.16 -4.35 17.86 10.87 0.19 -4.16 16 25 C 0.19 3.66 6.68 22.47 0.15 3.81 16 26 O -0.48 -8.21 11.39 -71.27 -0.81 -9.02 16 27 C -0.09 -1.93 9.53 22.64 0.22 -1.71 16 28 H 0.29 14.36 6.68 -92.71 -0.62 13.74 16 29 H 0.09 4.61 6.47 -2.91 -0.02 4.60 16 30 H 0.11 4.23 8.06 -2.91 -0.02 4.21 16 31 H 0.11 4.23 8.06 -2.91 -0.02 4.20 16 32 H 0.11 4.84 6.21 -2.91 -0.02 4.83 16 33 H 0.41 11.86 6.16 -92.70 -0.57 11.29 16 34 H 0.18 2.24 6.41 -2.91 -0.02 2.22 16 35 H 0.19 2.17 7.56 -2.91 -0.02 2.15 16 36 H 0.43 3.36 9.06 -74.06 -0.67 2.69 16 37 H 0.17 3.47 7.65 -2.91 -0.02 3.45 16 Total: -1.00 -63.45 333.81 3.36 -60.09 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: 0.09 Total: 35.34 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 3.22 Total: -33.84 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: -1.42 Total: -58.70 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -0.60 Total: -40.43 kcal Atomic # 14 Polarization: 35.47 SS G_CDS: 2.06 Total: 37.53 kcal Total: -63.45 3.36 -60.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549715371.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.435 kcal (2) G-P(sol) polarization free energy of solvation -63.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds