Wall clock time and date at job start Tue Mar 31 2020 14:46:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29467 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48499 * 109.47271 * 240.00458 * 3 2 1 5 5 H 1.48505 * 109.46784 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47111 * 120.00301 * 3 2 1 7 7 C 1.46646 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99626 * 190.65673 * 7 2 1 9 9 C 1.39562 * 119.99895 * 10.65219 * 7 2 1 10 10 C 1.41612 * 120.65580 * 32.78581 * 9 7 2 11 11 C 1.35932 * 119.84384 * 179.97438 * 10 9 7 12 12 C 1.39150 * 121.30949 * 359.97438 * 11 10 9 13 13 C 1.37864 * 121.38048 * 0.02562 * 12 11 10 14 14 C 1.39044 * 120.02972 * 0.25969 * 13 12 11 15 15 N 1.38076 * 120.62457 * 179.73962 * 14 13 12 16 16 C 1.34777 * 120.00299 * 19.40373 * 15 14 13 17 17 O 1.21573 * 119.99873 * 5.51161 * 16 15 14 18 18 C 1.47467 * 119.99743 * 185.50507 * 16 15 14 19 19 C 1.39747 * 120.19572 * 359.73124 * 18 16 15 20 20 C 1.37779 * 119.89914 * 179.73998 * 19 18 16 21 21 C 1.38561 * 120.30577 * 0.50689 * 20 19 18 22 22 N 1.48020 * 119.79634 * 179.74404 * 21 20 19 23 23 O 1.31701 * 119.99667 * 180.02562 * 22 21 20 24 24 O 1.31695 * 120.00408 * 0.02562 * 22 21 20 25 25 C 1.38054 * 120.39889 * 359.76428 * 21 20 19 26 26 C 1.38704 * 120.08907 * 359.97438 * 25 21 20 27 27 O 1.35645 * 120.15193 * 180.02562 * 26 25 21 28 28 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.08286 * 359.97438 * 10 9 7 30 30 H 1.08009 * 119.34476 * 180.02562 * 11 10 9 31 31 H 1.08003 * 119.31413 * 180.02562 * 12 11 10 32 32 H 1.08002 * 119.98742 * 179.97438 * 13 12 11 33 33 H 0.97003 * 119.99674 * 199.39095 * 15 14 13 34 34 H 1.07993 * 120.04722 * 359.96976 * 19 18 16 35 35 H 1.08001 * 119.84420 * 180.23201 * 20 19 18 36 36 H 1.07995 * 119.95390 * 179.97438 * 25 21 20 37 37 H 0.96701 * 113.99463 * 269.97586 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2947 0.0000 0.0000 3 14 2.2288 1.6177 0.0000 4 1 3.0824 1.6964 -1.2125 5 1 1.2637 2.7465 0.0006 6 1 3.0825 1.6963 1.2124 7 6 2.0279 -1.2700 -0.0006 8 1 3.0939 -1.2781 0.1724 9 6 1.3480 -2.4681 -0.2245 10 6 0.2226 -2.5101 -1.0831 11 6 -0.4269 -3.6862 -1.2898 12 6 -0.0088 -4.8614 -0.6730 13 6 1.0800 -4.8802 0.1725 14 6 1.7824 -3.7080 0.4287 15 7 2.8714 -3.7118 1.2777 16 6 3.5044 -4.8685 1.5567 17 8 3.1812 -5.8915 0.9848 18 6 4.5890 -4.8930 2.5554 19 6 4.9676 -3.7184 3.2109 20 6 5.9782 -3.7493 4.1469 21 6 6.6288 -4.9384 4.4343 22 7 7.7168 -4.9577 5.4378 23 8 8.3382 -6.0857 5.7137 24 8 8.0634 -3.8470 6.0547 25 6 6.2687 -6.1052 3.7902 26 6 5.2500 -6.0939 2.8489 27 8 4.8948 -7.2396 2.2156 28 1 -0.4849 0.8401 0.0004 29 1 -0.1189 -1.6099 -1.5725 30 1 -1.2841 -3.7091 -1.9466 31 1 -0.5485 -5.7779 -0.8605 32 1 1.3847 -5.8051 0.6396 33 1 3.1809 -2.8818 1.6731 34 1 4.4663 -2.7885 2.9869 35 1 6.2676 -2.8417 4.6557 36 1 6.7810 -7.0279 4.0194 37 1 5.3811 -7.4028 1.3958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563760904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:37 Heat of formation + Delta-G solvation = 8.238954 kcal Electronic energy + Delta-G solvation = -26439.687997 eV Core-core repulsion = 22345.118783 eV Total energy + Delta-G solvation = -4094.569214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -41.09377 -39.60746 -38.67533 -37.04658 -36.90287 -34.69102 -34.13021 -33.81032 -32.30472 -30.64049 -29.93853 -28.68999 -27.17101 -25.09964 -23.59783 -23.33766 -21.78136 -20.99264 -19.76336 -19.53915 -18.41928 -18.05233 -17.56936 -17.39853 -16.62022 -16.28375 -15.90338 -15.43221 -15.38760 -15.06857 -14.71032 -14.33443 -14.18693 -13.49420 -13.11605 -12.97991 -12.83235 -12.45584 -12.40264 -11.87146 -11.68863 -11.61562 -11.52727 -11.41540 -11.18351 -11.10086 -10.93939 -10.70423 -10.32227 -9.94168 -9.89595 -9.64757 -9.53396 -9.46801 -8.90467 -7.56778 -7.24112 -6.83686 -4.52049 -1.11676 0.45362 0.49799 0.78263 2.27220 2.60850 2.83822 2.84449 2.86890 3.08600 3.35833 3.49795 3.61773 3.62698 3.94483 4.18746 4.31982 4.37402 4.57942 4.67927 5.05240 5.21236 5.27517 5.42886 5.43554 5.57371 5.84962 6.25594 6.31112 6.46178 6.46497 6.62291 6.70534 6.97059 7.13404 7.27187 7.41906 7.57412 7.79394 7.90121 8.03593 8.11019 8.34977 8.47676 8.57640 8.83837 9.76499 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.003531 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.959607 B = 7928.520816 C = 9984.445415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.758 5.758 2 C 0.078 3.922 3 Si 0.916 3.084 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.261 1.261 7 C -0.478 4.478 8 H 0.080 0.920 9 C 0.115 3.885 10 C -0.166 4.166 11 C -0.101 4.101 12 C -0.240 4.240 13 C -0.089 4.089 14 C -0.016 4.016 15 N -0.606 5.606 16 C 0.518 3.482 17 O -0.510 6.510 18 C -0.088 4.088 19 C -0.077 4.077 20 C -0.065 4.065 21 C 0.020 3.980 22 N -0.020 5.020 23 O -0.169 6.169 24 O -0.164 6.164 25 C -0.090 4.090 26 C 0.167 3.833 27 O -0.461 6.461 28 H 0.291 0.709 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.126 0.874 33 H 0.403 0.597 34 H 0.160 0.840 35 H 0.164 0.836 36 H 0.166 0.834 37 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.873 -2.687 4.554 10.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.379 5.379 2 C -0.148 4.148 3 Si 0.740 3.260 4 H -0.184 1.184 5 H -0.200 1.200 6 H -0.185 1.185 7 C -0.505 4.505 8 H 0.098 0.902 9 C 0.111 3.889 10 C -0.186 4.186 11 C -0.120 4.120 12 C -0.260 4.260 13 C -0.109 4.109 14 C -0.111 4.111 15 N -0.246 5.246 16 C 0.305 3.695 17 O -0.388 6.388 18 C -0.093 4.093 19 C -0.097 4.097 20 C -0.084 4.084 21 C -0.066 4.066 22 N 0.461 4.539 23 O -0.363 6.363 24 O -0.359 6.359 25 C -0.110 4.110 26 C 0.118 3.882 27 O -0.272 6.272 28 H 0.103 0.897 29 H 0.131 0.869 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.143 0.857 33 H 0.239 0.761 34 H 0.178 0.822 35 H 0.181 0.819 36 H 0.183 0.817 37 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 7.545 -3.323 4.185 9.246 hybrid contribution 1.014 1.282 0.174 1.644 sum 8.558 -2.040 4.359 9.819 Atomic orbital electron populations 1.69076 1.08690 1.30748 1.29376 1.27393 0.94520 1.01582 0.91328 0.86241 0.80247 0.79137 0.80424 1.18400 1.19997 1.18546 1.20279 0.95157 0.89424 1.45650 0.90245 1.18268 0.92436 0.89718 0.88445 1.20780 0.99614 0.96554 1.01655 1.20366 0.98470 0.93611 0.99504 1.20209 1.01768 0.96830 1.07150 1.20979 0.94553 0.96887 0.98449 1.18878 0.93917 0.96521 1.01774 1.42492 1.28755 1.09137 1.44264 1.17737 0.82872 0.84937 0.83919 1.90730 1.64482 1.32774 1.50831 1.21265 0.97468 0.93381 0.97141 1.21426 0.95540 0.98662 0.94046 1.21054 0.93746 0.97158 0.96454 1.20229 0.93321 0.97021 0.96000 1.50463 1.00791 1.02543 1.00122 1.96285 1.54380 1.15239 1.70370 1.96286 1.70580 1.17575 1.51455 1.21323 0.96013 0.98227 0.95403 1.18018 0.91131 0.85750 0.93255 1.84810 1.65049 1.36036 1.41345 0.89656 0.86912 0.89647 0.89401 0.85699 0.76078 0.82223 0.81893 0.81677 0.73732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 42. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -17.14 11.29 55.99 0.63 -16.51 16 2 C 0.08 1.68 5.40 -15.16 -0.08 1.60 16 3 Si 0.92 15.89 29.66 -169.99 -5.04 10.85 16 4 H -0.26 -4.55 7.11 56.52 0.40 -4.15 16 5 H -0.28 -4.72 7.11 56.52 0.40 -4.31 16 6 H -0.26 -4.38 7.11 56.52 0.40 -3.98 16 7 C -0.48 -10.78 8.58 -35.70 -0.31 -11.08 16 8 H 0.08 1.65 7.52 -52.49 -0.39 1.25 16 9 C 0.12 2.75 5.69 -104.69 -0.60 2.16 16 10 C -0.17 -4.02 8.66 -39.12 -0.34 -4.36 16 11 C -0.10 -2.29 9.91 -40.07 -0.40 -2.69 16 12 C -0.24 -5.41 9.99 -39.38 -0.39 -5.80 16 13 C -0.09 -2.04 8.78 -39.42 -0.35 -2.39 16 14 C -0.02 -0.37 6.71 -81.33 -0.55 -0.91 16 15 N -0.61 -11.04 5.14 -9.18 -0.05 -11.08 16 16 C 0.52 8.76 7.60 -12.50 -0.10 8.67 16 17 O -0.51 -10.02 12.04 -16.58 -0.20 -10.22 16 18 C -0.09 -1.11 5.89 -104.84 -0.62 -1.73 16 19 C -0.08 -0.77 9.53 -39.19 -0.37 -1.15 16 20 C -0.06 -0.61 9.55 -39.63 -0.38 -0.99 16 21 C 0.02 0.22 6.88 -79.89 -0.55 -0.33 16 22 N -0.02 -0.25 4.98 33.99 0.17 -0.08 16 23 O -0.17 -2.32 19.13 -31.57 -0.60 -2.93 16 24 O -0.16 -2.23 19.13 -31.56 -0.60 -2.84 16 25 C -0.09 -0.92 9.50 -39.48 -0.38 -1.30 16 26 C 0.17 1.92 6.72 -38.68 -0.26 1.66 16 27 O -0.46 -5.43 11.58 -40.51 -0.47 -5.90 16 28 H 0.29 5.93 8.27 -40.82 -0.34 5.59 16 29 H 0.11 2.77 6.61 -52.48 -0.35 2.42 16 30 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 31 H 0.09 1.80 8.06 -52.48 -0.42 1.37 16 32 H 0.13 2.86 5.42 -52.49 -0.28 2.57 16 33 H 0.40 6.31 5.73 -40.82 -0.23 6.08 16 34 H 0.16 1.33 6.42 -52.49 -0.34 0.99 16 35 H 0.16 1.25 7.56 -52.49 -0.40 0.86 16 36 H 0.17 1.47 7.56 -52.49 -0.40 1.07 16 37 H 0.40 3.13 9.06 45.56 0.41 3.54 16 LS Contribution 333.93 15.07 5.03 5.03 Total: -1.00 -28.97 333.93 -8.74 -37.71 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: -1.96 Total: 14.62 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -5.65 Total: -18.65 kcal Atomic # 7 Polarization: -28.43 SS G_CDS: 0.75 Total: -27.68 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -1.88 Total: -21.89 kcal Atomic # 14 Polarization: 15.89 SS G_CDS: -5.04 Total: 10.85 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -28.97 -8.74 -37.71 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563760904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.952 kcal (2) G-P(sol) polarization free energy of solvation -28.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds