Wall clock time and date at job start Tue Mar 31 2020 14:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29467 * 1 3 3 Si 1.86803 * 120.00239 * 2 1 4 4 H 1.48499 * 109.47271 * 240.00458 * 3 2 1 5 5 H 1.48505 * 109.46784 * 0.02562 * 3 2 1 6 6 H 1.48493 * 109.47111 * 120.00301 * 3 2 1 7 7 C 1.46646 * 119.99839 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99626 * 190.65673 * 7 2 1 9 9 C 1.39562 * 119.99895 * 10.65219 * 7 2 1 10 10 C 1.41612 * 120.65580 * 32.78581 * 9 7 2 11 11 C 1.35932 * 119.84384 * 179.97438 * 10 9 7 12 12 C 1.39150 * 121.30949 * 359.97438 * 11 10 9 13 13 C 1.37864 * 121.38048 * 0.02562 * 12 11 10 14 14 C 1.39044 * 120.02972 * 0.25969 * 13 12 11 15 15 N 1.38076 * 120.62457 * 179.73962 * 14 13 12 16 16 C 1.34777 * 120.00299 * 19.40373 * 15 14 13 17 17 O 1.21573 * 119.99873 * 5.51161 * 16 15 14 18 18 C 1.47467 * 119.99743 * 185.50507 * 16 15 14 19 19 C 1.39747 * 120.19572 * 359.73124 * 18 16 15 20 20 C 1.37779 * 119.89914 * 179.73998 * 19 18 16 21 21 C 1.38561 * 120.30577 * 0.50689 * 20 19 18 22 22 N 1.48020 * 119.79634 * 179.74404 * 21 20 19 23 23 O 1.31701 * 119.99667 * 180.02562 * 22 21 20 24 24 O 1.31695 * 120.00408 * 0.02562 * 22 21 20 25 25 C 1.38054 * 120.39889 * 359.76428 * 21 20 19 26 26 C 1.38704 * 120.08907 * 359.97438 * 25 21 20 27 27 O 1.35645 * 120.15193 * 180.02562 * 26 25 21 28 28 H 0.97001 * 119.99601 * 359.97438 * 1 2 3 29 29 H 1.08008 * 120.08286 * 359.97438 * 10 9 7 30 30 H 1.08009 * 119.34476 * 180.02562 * 11 10 9 31 31 H 1.08003 * 119.31413 * 180.02562 * 12 11 10 32 32 H 1.08002 * 119.98742 * 179.97438 * 13 12 11 33 33 H 0.97003 * 119.99674 * 199.39095 * 15 14 13 34 34 H 1.07993 * 120.04722 * 359.96976 * 19 18 16 35 35 H 1.08001 * 119.84420 * 180.23201 * 20 19 18 36 36 H 1.07995 * 119.95390 * 179.97438 * 25 21 20 37 37 H 0.96701 * 113.99463 * 269.97586 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2947 0.0000 0.0000 3 14 2.2288 1.6177 0.0000 4 1 3.0824 1.6964 -1.2125 5 1 1.2637 2.7465 0.0006 6 1 3.0825 1.6963 1.2124 7 6 2.0279 -1.2700 -0.0006 8 1 3.0939 -1.2781 0.1724 9 6 1.3480 -2.4681 -0.2245 10 6 0.2226 -2.5101 -1.0831 11 6 -0.4269 -3.6862 -1.2898 12 6 -0.0088 -4.8614 -0.6730 13 6 1.0800 -4.8802 0.1725 14 6 1.7824 -3.7080 0.4287 15 7 2.8714 -3.7118 1.2777 16 6 3.5044 -4.8685 1.5567 17 8 3.1812 -5.8915 0.9848 18 6 4.5890 -4.8930 2.5554 19 6 4.9676 -3.7184 3.2109 20 6 5.9782 -3.7493 4.1469 21 6 6.6288 -4.9384 4.4343 22 7 7.7168 -4.9577 5.4378 23 8 8.3382 -6.0857 5.7137 24 8 8.0634 -3.8470 6.0547 25 6 6.2687 -6.1052 3.7902 26 6 5.2500 -6.0939 2.8489 27 8 4.8948 -7.2396 2.2156 28 1 -0.4849 0.8401 0.0004 29 1 -0.1189 -1.6099 -1.5725 30 1 -1.2841 -3.7091 -1.9466 31 1 -0.5485 -5.7779 -0.8605 32 1 1.3847 -5.8051 0.6396 33 1 3.1809 -2.8818 1.6731 34 1 4.4663 -2.7885 2.9869 35 1 6.2676 -2.8417 4.6557 36 1 6.7810 -7.0279 4.0194 37 1 5.3811 -7.4028 1.3958 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563760904.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:36 Heat of formation + Delta-G solvation = -8.002870 kcal Electronic energy + Delta-G solvation = -26440.392295 eV Core-core repulsion = 22345.118783 eV Total energy + Delta-G solvation = -4095.273513 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.094 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.15564 -40.84635 -39.77781 -38.51393 -37.95706 -35.70868 -35.62732 -35.46981 -33.34245 -31.66701 -31.52110 -30.24311 -28.31262 -26.74639 -24.70462 -24.29850 -23.23613 -22.52803 -21.24175 -20.48447 -19.52734 -19.40044 -18.92530 -18.48237 -17.96722 -17.25246 -17.16853 -16.78012 -16.50292 -16.25399 -16.04234 -15.74418 -15.23543 -14.73348 -14.62878 -14.39432 -14.06894 -13.87092 -13.50039 -13.32930 -13.24731 -12.89477 -12.71747 -12.68363 -12.53236 -12.14756 -12.12146 -11.98363 -11.92277 -11.57579 -11.22424 -11.12340 -10.88475 -10.47292 -10.32310 -9.34725 -8.87672 -8.51102 -6.24842 -2.12137 -0.50744 -0.34893 -0.17207 0.82373 1.10921 1.43767 1.54088 1.56568 1.58521 2.07555 2.17560 2.27215 2.68367 2.69896 3.12376 3.32694 3.36767 3.59152 3.67018 3.77403 4.23432 4.28634 4.42052 4.52713 4.56377 4.58031 4.66319 4.81364 4.95928 5.01325 5.10794 5.22595 5.42709 5.45663 5.72957 5.85094 6.10845 6.19898 6.27533 6.52921 6.54626 6.63927 6.81415 7.02171 7.24483 8.18255 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.012650 B = 0.003531 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2212.959607 B = 7928.520816 C = 9984.445415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.042 3.958 3 Si 0.988 3.012 4 H -0.262 1.262 5 H -0.273 1.273 6 H -0.245 1.245 7 C -0.497 4.497 8 H 0.094 0.906 9 C 0.089 3.911 10 C -0.193 4.193 11 C -0.109 4.109 12 C -0.253 4.253 13 C -0.106 4.106 14 C -0.017 4.017 15 N -0.610 5.610 16 C 0.525 3.475 17 O -0.538 6.538 18 C -0.102 4.102 19 C -0.061 4.061 20 C -0.051 4.051 21 C 0.020 3.980 22 N -0.018 5.018 23 O -0.188 6.188 24 O -0.167 6.167 25 C -0.080 4.080 26 C 0.171 3.829 27 O -0.477 6.477 28 H 0.299 0.701 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.414 0.586 34 H 0.180 0.820 35 H 0.188 0.812 36 H 0.179 0.821 37 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.663 -1.545 5.777 12.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.182 4.182 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.168 1.168 7 C -0.524 4.524 8 H 0.112 0.888 9 C 0.085 3.915 10 C -0.213 4.213 11 C -0.127 4.127 12 C -0.273 4.273 13 C -0.126 4.126 14 C -0.112 4.112 15 N -0.252 5.252 16 C 0.314 3.686 17 O -0.418 6.418 18 C -0.107 4.107 19 C -0.080 4.080 20 C -0.070 4.070 21 C -0.066 4.066 22 N 0.460 4.540 23 O -0.379 6.379 24 O -0.364 6.364 25 C -0.099 4.099 26 C 0.123 3.877 27 O -0.291 6.291 28 H 0.111 0.889 29 H 0.118 0.882 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.141 0.859 33 H 0.253 0.747 34 H 0.197 0.803 35 H 0.205 0.795 36 H 0.197 0.803 37 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges 9.365 -2.221 5.422 11.047 hybrid contribution 0.523 0.840 -0.147 1.001 sum 9.888 -1.381 5.275 11.292 Atomic orbital electron populations 1.69135 1.10323 1.32114 1.29728 1.28271 0.95134 1.04580 0.90172 0.85156 0.78842 0.74506 0.80719 1.18600 1.19715 1.16846 1.20601 0.95900 0.89768 1.46105 0.88806 1.18604 0.92922 0.90964 0.89013 1.20811 1.01022 0.96584 1.02903 1.20556 0.99003 0.93338 0.99833 1.20442 1.02063 0.97442 1.07353 1.21121 0.95160 0.97152 0.99189 1.18962 0.94728 0.95855 1.01674 1.42423 1.28253 1.10298 1.44180 1.18274 0.82895 0.83821 0.83600 1.90705 1.65503 1.33695 1.51905 1.20953 0.97117 0.95102 0.97486 1.21566 0.95072 0.98326 0.93052 1.21279 0.92615 0.97508 0.95619 1.20438 0.92824 0.97844 0.95512 1.50666 1.00897 1.02268 1.00140 1.96293 1.55169 1.15354 1.71082 1.96281 1.70770 1.17584 1.51740 1.21343 0.95371 0.98738 0.94476 1.18009 0.91057 0.85313 0.93328 1.84768 1.65778 1.36156 1.42376 0.88928 0.88214 0.87888 0.87798 0.85890 0.74718 0.80293 0.79461 0.80334 0.71934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -36.09 11.29 23.23 0.26 -35.83 16 2 C 0.04 1.77 5.40 87.24 0.47 2.25 16 3 Si 0.99 31.28 29.66 68.60 2.03 33.31 16 4 H -0.26 -8.32 7.11 99.48 0.71 -7.61 16 5 H -0.27 -8.43 7.11 99.48 0.71 -7.72 16 6 H -0.25 -7.09 7.11 99.48 0.71 -6.38 16 7 C -0.50 -22.33 8.58 24.79 0.21 -22.12 16 8 H 0.09 3.78 7.52 -2.91 -0.02 3.76 16 9 C 0.09 4.32 5.69 -19.91 -0.11 4.21 16 10 C -0.19 -9.66 8.66 22.57 0.20 -9.47 16 11 C -0.11 -5.07 9.91 21.95 0.22 -4.85 16 12 C -0.25 -11.65 9.99 22.40 0.22 -11.43 16 13 C -0.11 -4.97 8.78 22.37 0.20 -4.77 16 14 C -0.02 -0.76 6.71 40.57 0.27 -0.49 16 15 N -0.61 -21.82 5.14 -301.23 -1.55 -23.37 16 16 C 0.53 17.34 7.60 86.68 0.66 17.99 16 17 O -0.54 -21.14 12.04 16.97 0.20 -20.94 16 18 C -0.10 -2.38 5.89 -20.01 -0.12 -2.50 16 19 C -0.06 -1.03 9.53 22.53 0.21 -0.81 16 20 C -0.05 -0.78 9.55 22.24 0.21 -0.57 16 21 C 0.02 0.38 6.88 36.41 0.25 0.63 16 22 N -0.02 -0.42 4.98 -46.38 -0.23 -0.66 16 23 O -0.19 -4.85 19.13 3.51 0.07 -4.79 16 24 O -0.17 -4.13 19.13 3.52 0.07 -4.06 16 25 C -0.08 -1.43 9.50 22.34 0.21 -1.22 16 26 C 0.17 3.61 6.72 22.85 0.15 3.76 16 27 O -0.48 -10.65 11.58 -68.68 -0.80 -11.45 16 28 H 0.30 12.19 8.27 -92.71 -0.77 11.43 16 29 H 0.10 5.12 6.61 -2.91 -0.02 5.10 16 30 H 0.10 4.26 8.06 -2.91 -0.02 4.24 16 31 H 0.10 4.29 8.06 -2.91 -0.02 4.27 16 32 H 0.12 5.74 5.42 -2.91 -0.02 5.72 16 33 H 0.41 12.41 5.73 -92.71 -0.53 11.88 16 34 H 0.18 2.34 6.42 -2.91 -0.02 2.32 16 35 H 0.19 2.03 7.56 -2.91 -0.02 2.01 16 36 H 0.18 2.75 7.56 -2.91 -0.02 2.72 16 37 H 0.42 6.06 9.06 -74.06 -0.67 5.39 16 Total: -1.00 -63.35 333.93 3.31 -60.04 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -0.01 Total: 37.12 kcal Atomic # 6 Polarization: -32.64 SS G_CDS: 3.26 Total: -29.38 kcal Atomic # 7 Polarization: -58.34 SS G_CDS: -1.52 Total: -59.86 kcal Atomic # 8 Polarization: -40.78 SS G_CDS: -0.46 Total: -41.23 kcal Atomic # 14 Polarization: 31.28 SS G_CDS: 2.03 Total: 33.31 kcal Total: -63.35 3.31 -60.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563760904.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.038 kcal (2) G-P(sol) polarization free energy of solvation -63.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds