Wall clock time and date at job start Tue Mar 31 2020 15:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48502 * 109.46929 * 269.99874 * 3 2 1 5 5 H 1.48503 * 109.47113 * 29.99940 * 3 2 1 6 6 H 1.48499 * 109.46921 * 149.99866 * 3 2 1 7 7 C 1.37877 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00353 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99792 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47342 * 179.97438 * 9 7 2 11 11 C 1.53118 * 109.52661 * 175.00016 * 10 9 7 12 12 C 1.53038 * 109.28083 * 177.56404 * 11 10 9 13 13 N 1.46847 * 109.51871 * 300.82071 * 12 11 10 14 14 C 1.46900 * 110.99748 * 185.83905 * 13 12 11 15 15 C 1.50700 * 109.47226 * 170.00055 * 14 13 12 16 16 N 1.31874 * 119.61116 * 90.00239 * 15 14 13 17 17 C 1.31839 * 121.75217 * 180.02562 * 16 15 14 18 18 C 1.38354 * 120.77371 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 120.42773 * 179.97438 * 18 17 16 20 20 C 1.38719 * 119.15041 * 359.97272 * 18 17 16 21 21 C 1.38310 * 119.61500 * 269.97932 * 15 14 13 22 22 Cl 1.73607 * 120.42145 * 359.97438 * 21 15 14 23 23 C 1.46844 * 111.20047 * 61.74437 * 13 12 11 24 24 C 1.53038 * 109.52453 * 298.25571 * 23 13 12 25 25 H 0.97000 * 120.00055 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.47440 * 60.00305 * 9 7 2 27 27 H 1.08999 * 109.47430 * 300.00280 * 9 7 2 28 28 H 1.09007 * 109.51840 * 54.87495 * 10 9 7 29 29 H 1.09002 * 109.50104 * 57.61626 * 11 10 9 30 30 H 1.09005 * 109.53515 * 297.52825 * 11 10 9 31 31 H 1.08993 * 109.46313 * 180.80541 * 12 11 10 32 32 H 1.08993 * 109.45351 * 60.82889 * 12 11 10 33 33 H 1.08997 * 109.47260 * 50.00049 * 14 13 12 34 34 H 1.09004 * 109.47416 * 290.00247 * 14 13 12 35 35 H 1.08001 * 119.61608 * 179.97438 * 17 16 15 36 36 H 1.07998 * 120.80524 * 180.02562 * 20 18 17 37 37 H 1.09005 * 109.46170 * 58.26735 * 23 13 12 38 38 H 1.08994 * 109.46623 * 178.23669 * 23 13 12 39 39 H 1.08996 * 109.50290 * 299.23802 * 24 23 13 40 40 H 1.08996 * 109.53929 * 179.13632 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 6 5.5475 -2.6398 -0.1250 12 6 6.0566 -4.0817 -0.0619 13 7 5.6517 -4.6897 1.2120 14 6 6.2399 -6.0267 1.3676 15 6 6.0098 -6.5162 2.7742 16 7 4.9190 -7.2020 3.0552 17 6 4.6750 -7.6499 4.2710 18 6 5.5639 -7.4127 5.3044 19 17 5.2333 -8.0061 6.9020 20 6 6.7227 -6.6948 5.0476 21 6 6.9452 -6.2412 3.7552 22 17 8.3786 -5.3386 3.3748 23 6 4.1893 -4.7406 1.3350 24 6 3.6244 -3.3184 1.3135 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8745 -0.6807 -0.8905 28 1 3.5854 -3.1779 -0.8382 29 1 5.9816 -2.0644 0.6927 30 1 5.8354 -2.1935 -1.0769 31 1 7.1440 -4.0865 -0.1372 32 1 5.6328 -4.6528 -0.8878 33 1 7.3108 -5.9777 1.1706 34 1 5.7719 -6.7139 0.6627 35 1 3.7703 -8.2077 4.4627 36 1 7.4351 -6.4946 5.8342 37 1 3.7744 -5.3087 0.5024 38 1 3.9204 -5.2240 2.2741 39 1 4.0282 -2.7538 2.1538 40 1 2.5377 -3.3567 1.3893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564917178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:14 Heat of formation + Delta-G solvation = 13.703854 kcal Electronic energy + Delta-G solvation = -23155.840083 eV Core-core repulsion = 19635.617254 eV Total energy + Delta-G solvation = -3520.222829 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.88339 -38.68833 -37.18825 -36.88712 -34.89597 -32.87218 -32.48023 -31.40881 -30.37392 -28.67384 -26.21641 -24.21674 -23.54758 -22.77625 -21.91030 -20.42686 -18.98426 -17.70549 -17.42617 -16.70933 -16.36099 -15.97381 -14.94668 -14.61119 -14.58425 -14.26847 -13.88102 -13.71595 -13.49134 -13.01715 -12.99376 -12.66181 -12.47533 -12.29767 -12.15462 -11.96039 -11.76478 -11.69754 -11.38241 -11.17355 -10.84093 -10.69062 -10.51854 -10.19476 -10.03857 -10.01388 -9.67355 -9.55305 -9.26159 -9.13778 -8.96215 -8.48100 -8.18687 -5.99065 -3.95741 0.35140 0.56467 1.39141 1.82252 3.03586 3.34029 3.41590 3.46160 3.76689 4.12020 4.20300 4.23155 4.50103 4.56250 4.67324 5.05318 5.22876 5.27976 5.34021 5.35531 5.42738 5.48595 5.61923 5.72689 5.84269 5.85755 5.98293 6.09374 6.23195 6.35363 6.50039 6.58912 6.88063 6.98836 7.07533 7.18454 7.26272 7.34699 7.39801 7.55193 7.86499 8.60395 9.06481 9.64359 11.14409 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.002992 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.968701 B = 9355.818175 C =10202.473500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.065 3.935 3 Si 0.878 3.122 4 H -0.279 1.279 5 H -0.289 1.289 6 H -0.265 1.265 7 C -0.513 4.513 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.073 4.073 11 C -0.113 4.113 12 C 0.062 3.938 13 N -0.527 5.527 14 C 0.096 3.904 15 C 0.160 3.840 16 N -0.446 5.446 17 C 0.121 3.879 18 C -0.083 4.083 19 Cl -0.046 7.046 20 C -0.061 4.061 21 C -0.060 4.060 22 Cl -0.032 7.032 23 C 0.056 3.944 24 C -0.099 4.099 25 H 0.261 0.739 26 H 0.015 0.985 27 H 0.009 0.991 28 H 0.058 0.942 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.033 0.967 33 H 0.095 0.905 34 H 0.058 0.942 35 H 0.173 0.827 36 H 0.155 0.845 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.060 0.940 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.186 -17.542 9.720 26.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.136 4.136 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.215 1.215 6 H -0.190 1.190 7 C -0.551 4.551 8 H 0.090 0.910 9 C -0.046 4.046 10 C -0.091 4.091 11 C -0.151 4.151 12 C -0.065 4.065 13 N -0.252 5.252 14 C -0.032 4.032 15 C 0.022 3.978 16 N -0.155 5.155 17 C -0.038 4.038 18 C -0.113 4.113 19 Cl -0.017 7.017 20 C -0.088 4.088 21 C -0.090 4.090 22 Cl -0.003 7.003 23 C -0.071 4.071 24 C -0.137 4.137 25 H 0.071 0.929 26 H 0.034 0.966 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.076 0.924 35 H 0.190 0.810 36 H 0.173 0.827 37 H 0.051 0.949 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.710 -17.258 9.517 25.838 hybrid contribution 0.664 0.616 0.292 0.951 sum 17.374 -16.642 9.808 25.981 Atomic orbital electron populations 1.69919 1.06277 1.26721 1.51625 1.25033 0.94689 0.99092 0.94784 0.86808 0.80442 0.83821 0.78391 1.20449 1.21545 1.18992 1.21161 0.89555 0.94274 1.50116 0.90968 1.19605 0.97051 0.91835 0.96081 1.21053 0.92436 0.98788 0.96873 1.21719 0.97586 0.94331 1.01491 1.22084 0.99461 0.96290 0.88677 1.61967 1.10779 1.17579 1.34922 1.21025 1.01232 0.91335 0.89640 1.21251 0.88132 0.92044 0.96420 1.67879 1.18076 1.09232 1.20324 1.22943 0.98365 0.95972 0.86484 1.22004 0.97580 1.02763 0.88927 1.98401 1.95001 1.86602 1.21692 1.21438 0.96405 0.94894 0.96022 1.21739 0.92801 0.99966 0.94454 1.98401 1.35222 1.72552 1.94161 1.22260 0.85524 0.98750 1.00608 1.21545 1.01057 0.92861 0.98251 0.92885 0.96621 0.97243 0.92376 0.91582 0.91980 0.91370 0.94917 0.88669 0.92396 0.81040 0.82739 0.94909 0.91196 0.92160 0.90414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.12 13.96 55.43 0.77 -27.34 16 2 C 0.06 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 22.00 27.47 -169.99 -4.67 17.33 16 4 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 7 C -0.51 -14.51 9.00 -34.44 -0.31 -14.82 16 8 H 0.07 2.19 7.33 -52.49 -0.38 1.80 16 9 C -0.01 -0.20 3.52 -27.89 -0.10 -0.30 16 10 C -0.07 -1.43 2.20 -90.50 -0.20 -1.63 16 11 C -0.11 -1.82 5.38 -26.65 -0.14 -1.96 16 12 C 0.06 0.84 5.46 -3.83 -0.02 0.81 16 13 N -0.53 -7.30 4.65 -236.12 -1.10 -8.39 16 14 C 0.10 1.11 4.86 -4.98 -0.02 1.08 16 15 C 0.16 1.86 5.55 -82.55 -0.46 1.40 16 16 N -0.45 -5.25 9.05 -9.42 -0.09 -5.33 16 17 C 0.12 1.17 10.99 -17.51 -0.19 0.98 16 18 C -0.08 -0.75 6.34 -39.36 -0.25 -1.00 16 19 Cl -0.05 -0.36 28.99 -51.86 -1.50 -1.86 16 20 C -0.06 -0.55 9.79 -39.21 -0.38 -0.93 16 21 C -0.06 -0.62 6.33 -39.36 -0.25 -0.87 16 22 Cl -0.03 -0.32 27.32 -51.86 -1.42 -1.73 16 23 C 0.06 0.88 5.27 -3.83 -0.02 0.86 16 24 C -0.10 -1.87 5.15 -26.65 -0.14 -2.01 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.29 16 26 H 0.02 0.38 7.20 -51.92 -0.37 0.00 16 27 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 28 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.78 8.01 -51.93 -0.42 0.37 16 32 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.10 0.96 6.74 -51.93 -0.35 0.61 16 34 H 0.06 0.67 8.12 -51.93 -0.42 0.25 16 35 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 36 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 37 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 1.10 6.23 -51.93 -0.32 0.78 16 39 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 40 H 0.08 1.63 7.05 -51.93 -0.37 1.27 16 LS Contribution 349.04 15.07 5.26 5.26 Total: -1.00 -30.59 349.04 -10.90 -41.49 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -5.58 Total: -2.82 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -2.58 Total: -16.59 kcal Atomic # 7 Polarization: -40.66 SS G_CDS: -0.41 Total: -41.07 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.67 Total: 17.33 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -2.92 Total: -3.60 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -30.59 -10.90 -41.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564917178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.192 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds