Wall clock time and date at job start Tue Mar 31 2020 15:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99857 * 2 1 4 4 H 1.48502 * 109.46929 * 269.99874 * 3 2 1 5 5 H 1.48503 * 109.47113 * 29.99940 * 3 2 1 6 6 H 1.48499 * 109.46921 * 149.99866 * 3 2 1 7 7 C 1.37877 * 119.99932 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00353 * 359.97438 * 7 2 1 9 9 C 1.50697 * 119.99792 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.47342 * 179.97438 * 9 7 2 11 11 C 1.53118 * 109.52661 * 175.00016 * 10 9 7 12 12 C 1.53038 * 109.28083 * 177.56404 * 11 10 9 13 13 N 1.46847 * 109.51871 * 300.82071 * 12 11 10 14 14 C 1.46900 * 110.99748 * 185.83905 * 13 12 11 15 15 C 1.50700 * 109.47226 * 170.00055 * 14 13 12 16 16 N 1.31874 * 119.61116 * 90.00239 * 15 14 13 17 17 C 1.31839 * 121.75217 * 180.02562 * 16 15 14 18 18 C 1.38354 * 120.77371 * 0.02562 * 17 16 15 19 19 Cl 1.73599 * 120.42773 * 179.97438 * 18 17 16 20 20 C 1.38719 * 119.15041 * 359.97272 * 18 17 16 21 21 C 1.38310 * 119.61500 * 269.97932 * 15 14 13 22 22 Cl 1.73607 * 120.42145 * 359.97438 * 21 15 14 23 23 C 1.46844 * 111.20047 * 61.74437 * 13 12 11 24 24 C 1.53038 * 109.52453 * 298.25571 * 23 13 12 25 25 H 0.97000 * 120.00055 * 359.97438 * 1 2 3 26 26 H 1.09008 * 109.47440 * 60.00305 * 9 7 2 27 27 H 1.08999 * 109.47430 * 300.00280 * 9 7 2 28 28 H 1.09007 * 109.51840 * 54.87495 * 10 9 7 29 29 H 1.09002 * 109.50104 * 57.61626 * 11 10 9 30 30 H 1.09005 * 109.53515 * 297.52825 * 11 10 9 31 31 H 1.08993 * 109.46313 * 180.80541 * 12 11 10 32 32 H 1.08993 * 109.45351 * 60.82889 * 12 11 10 33 33 H 1.08997 * 109.47260 * 50.00049 * 14 13 12 34 34 H 1.09004 * 109.47416 * 290.00247 * 14 13 12 35 35 H 1.08001 * 119.61608 * 179.97438 * 17 16 15 36 36 H 1.07998 * 120.80524 * 180.02562 * 20 18 17 37 37 H 1.09005 * 109.46170 * 58.26735 * 23 13 12 38 38 H 1.08994 * 109.46623 * 178.23669 * 23 13 12 39 39 H 1.08996 * 109.50290 * 299.23802 * 24 23 13 40 40 H 1.08996 * 109.53929 * 179.13632 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0000 10 6 4.0216 -2.6365 0.0014 11 6 5.5475 -2.6398 -0.1250 12 6 6.0566 -4.0817 -0.0619 13 7 5.6517 -4.6897 1.2120 14 6 6.2399 -6.0267 1.3676 15 6 6.0098 -6.5162 2.7742 16 7 4.9190 -7.2020 3.0552 17 6 4.6750 -7.6499 4.2710 18 6 5.5639 -7.4127 5.3044 19 17 5.2333 -8.0061 6.9020 20 6 6.7227 -6.6948 5.0476 21 6 6.9452 -6.2412 3.7552 22 17 8.3786 -5.3386 3.3748 23 6 4.1893 -4.7406 1.3350 24 6 3.6244 -3.3184 1.3135 25 1 -0.4850 0.8400 0.0004 26 1 3.8752 -0.6796 0.8895 27 1 3.8745 -0.6807 -0.8905 28 1 3.5854 -3.1779 -0.8382 29 1 5.9816 -2.0644 0.6927 30 1 5.8354 -2.1935 -1.0769 31 1 7.1440 -4.0865 -0.1372 32 1 5.6328 -4.6528 -0.8878 33 1 7.3108 -5.9777 1.1706 34 1 5.7719 -6.7139 0.6627 35 1 3.7703 -8.2077 4.4627 36 1 7.4351 -6.4946 5.8342 37 1 3.7744 -5.3087 0.5024 38 1 3.9204 -5.2240 2.2741 39 1 4.0282 -2.7538 2.1538 40 1 2.5377 -3.3567 1.3893 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564917178.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:13 Heat of formation + Delta-G solvation = -4.038591 kcal Electronic energy + Delta-G solvation = -23156.609453 eV Core-core repulsion = 19635.617254 eV Total energy + Delta-G solvation = -3520.992199 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.67441 -39.92648 -37.90563 -37.62064 -36.34023 -34.48899 -33.52747 -32.59406 -31.67079 -30.24461 -27.46220 -25.13757 -24.91077 -24.04702 -22.98878 -21.96321 -20.47366 -18.86019 -18.44405 -18.20059 -17.22868 -17.01597 -16.34129 -15.92327 -15.55205 -15.51525 -15.17679 -14.90429 -14.72369 -14.48907 -14.19936 -14.02869 -13.53378 -13.34731 -13.29885 -13.15794 -13.03755 -12.74787 -12.67346 -12.47079 -12.22773 -12.05595 -11.93828 -11.83958 -11.65804 -11.22212 -11.01570 -10.81710 -10.77407 -10.74737 -10.66696 -9.91568 -9.28596 -8.25542 -6.27611 -0.41142 -0.16610 0.67636 1.08997 1.35790 1.37999 1.50062 2.24161 2.38356 2.93555 3.09775 3.21514 3.37577 3.54163 3.81264 3.92876 4.02775 4.03291 4.08708 4.27723 4.43666 4.49218 4.56845 4.62996 4.65587 4.72951 4.80446 4.84940 4.97945 5.05198 5.11889 5.13023 5.26513 5.34801 5.40391 5.53452 5.72874 5.75300 6.06921 6.14055 6.35147 6.59572 6.79776 7.36063 8.91297 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.002992 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.968701 B = 9355.818175 C =10202.473500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.001 3.999 3 Si 0.948 3.052 4 H -0.267 1.267 5 H -0.287 1.287 6 H -0.248 1.248 7 C -0.518 4.518 8 H 0.032 0.968 9 C -0.005 4.005 10 C -0.070 4.070 11 C -0.106 4.106 12 C 0.065 3.935 13 N -0.531 5.531 14 C 0.100 3.900 15 C 0.143 3.857 16 N -0.469 5.469 17 C 0.114 3.886 18 C -0.081 4.081 19 Cl -0.034 7.034 20 C -0.059 4.059 21 C -0.065 4.065 22 Cl -0.028 7.028 23 C 0.072 3.928 24 C -0.093 4.093 25 H 0.264 0.736 26 H 0.014 0.986 27 H 0.016 0.984 28 H 0.045 0.955 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.099 0.901 32 H 0.036 0.964 33 H 0.114 0.886 34 H 0.058 0.942 35 H 0.189 0.811 36 H 0.175 0.825 37 H 0.027 0.973 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.115 -17.582 10.225 28.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.596 5.596 2 C -0.195 4.195 3 Si 0.772 3.228 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.171 1.171 7 C -0.557 4.557 8 H 0.050 0.950 9 C -0.042 4.042 10 C -0.089 4.089 11 C -0.144 4.144 12 C -0.062 4.062 13 N -0.256 5.256 14 C -0.028 4.028 15 C 0.005 3.995 16 N -0.179 5.179 17 C -0.044 4.044 18 C -0.110 4.110 19 Cl -0.005 7.005 20 C -0.085 4.085 21 C -0.095 4.095 22 Cl 0.001 6.999 23 C -0.056 4.056 24 C -0.131 4.131 25 H 0.073 0.927 26 H 0.033 0.967 27 H 0.035 0.965 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.054 0.946 33 H 0.132 0.868 34 H 0.076 0.924 35 H 0.206 0.794 36 H 0.193 0.807 37 H 0.045 0.955 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 19.664 -17.318 10.020 28.053 hybrid contribution -0.321 0.524 0.202 0.647 sum 19.343 -16.794 10.222 27.581 Atomic orbital electron populations 1.70079 1.08261 1.27895 1.53350 1.26007 0.95569 1.03417 0.94528 0.85689 0.79501 0.78521 0.79117 1.19177 1.21253 1.17149 1.21481 0.92109 0.92826 1.49239 0.94952 1.19563 0.93841 0.94788 0.96042 1.20973 0.95446 0.95924 0.96568 1.21631 0.94065 0.96499 1.02193 1.22094 1.01189 0.94373 0.88531 1.61907 1.09009 1.19381 1.35324 1.21058 1.01990 0.89805 0.89974 1.21275 0.88694 0.92884 0.96683 1.67846 1.18564 1.09994 1.21465 1.23258 0.99116 0.95853 0.86150 1.22039 0.97375 1.02319 0.89300 1.98409 1.94943 1.86410 1.20765 1.21688 0.96641 0.94119 0.96076 1.21776 0.92823 1.00147 0.94734 1.98398 1.34840 1.72456 1.94183 1.21960 0.87173 0.96053 1.00398 1.21393 0.98931 0.95070 0.97718 0.92731 0.96726 0.96537 0.93674 0.91689 0.90619 0.88267 0.94574 0.86815 0.92386 0.79367 0.80746 0.95464 0.91266 0.92920 0.94015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 2 C 0.00 0.04 5.47 84.65 0.46 0.51 16 3 Si 0.95 45.28 27.47 68.60 1.88 47.16 16 4 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 5 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 6 H -0.25 -11.05 6.54 99.48 0.65 -10.40 16 7 C -0.52 -30.29 9.00 25.60 0.23 -30.06 16 8 H 0.03 2.08 7.33 -2.91 -0.02 2.06 16 9 C -0.01 -0.24 3.52 29.85 0.11 -0.13 16 10 C -0.07 -2.76 2.20 -10.71 -0.02 -2.78 16 11 C -0.11 -3.17 5.38 30.65 0.16 -3.00 16 12 C 0.07 1.57 5.46 86.33 0.47 2.04 16 13 N -0.53 -13.77 4.65 -900.95 -4.19 -17.96 16 14 C 0.10 2.11 4.86 85.56 0.42 2.52 16 15 C 0.14 3.10 5.55 42.57 0.24 3.34 16 16 N -0.47 -10.62 9.05 -183.71 -1.66 -12.28 16 17 C 0.11 2.08 10.99 84.72 0.93 3.01 16 18 C -0.08 -1.32 6.34 22.41 0.14 -1.18 16 19 Cl -0.03 -0.48 28.99 -2.72 -0.08 -0.56 16 20 C -0.06 -0.94 9.79 22.51 0.22 -0.72 16 21 C -0.06 -1.23 6.33 22.41 0.14 -1.09 16 22 Cl -0.03 -0.48 27.32 -2.72 -0.07 -0.56 16 23 C 0.07 2.27 5.27 86.33 0.45 2.72 16 24 C -0.09 -3.60 5.15 30.65 0.16 -3.45 16 25 H 0.26 15.79 8.31 -92.71 -0.77 15.01 16 26 H 0.01 0.69 7.20 -2.38 -0.02 0.67 16 27 H 0.02 0.75 7.57 -2.39 -0.02 0.74 16 28 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.08 2.06 8.14 -2.38 -0.02 2.05 16 31 H 0.10 1.86 8.01 -2.39 -0.02 1.84 16 32 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 1.96 6.74 -2.39 -0.02 1.94 16 34 H 0.06 1.24 8.12 -2.38 -0.02 1.22 16 35 H 0.19 2.56 8.06 -2.91 -0.02 2.54 16 36 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 37 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.07 2.19 6.23 -2.39 -0.01 2.18 16 39 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.04 1.87 7.05 -2.39 -0.02 1.85 16 Total: -1.00 -67.51 349.04 1.28 -66.23 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: 0.99 Total: 6.99 kcal Atomic # 6 Polarization: -32.37 SS G_CDS: 4.11 Total: -28.26 kcal Atomic # 7 Polarization: -85.46 SS G_CDS: -5.55 Total: -91.01 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 1.88 Total: 47.16 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -0.15 Total: -1.11 kcal Total: -67.51 1.28 -66.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564917178.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.192 kcal (2) G-P(sol) polarization free energy of solvation -67.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds