Wall clock time and date at job start Tue Mar 31 2020 15:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47028 * 2 1 4 4 C 1.38252 * 120.00111 * 98.40507 * 3 2 1 5 5 C 1.38213 * 120.00398 * 180.27764 * 4 3 2 6 6 C 1.38261 * 119.99303 * 359.46706 * 5 4 3 7 7 S 1.76202 * 120.00031 * 180.28239 * 6 5 4 8 8 O 1.42104 * 106.40132 * 23.80689 * 7 6 5 9 9 O 1.42094 * 106.40546 * 156.73247 * 7 6 5 10 10 N 1.65605 * 107.21474 * 270.27134 * 7 6 5 11 11 C 1.46502 * 119.99865 * 64.99956 * 10 7 6 12 12 C 1.52994 * 109.47099 * 164.99670 * 11 10 7 13 13 C 1.50704 * 109.47548 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99355 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00152 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00013 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99765 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46989 * 60.00475 * 17 15 13 19 19 H 1.48494 * 109.47048 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47360 * 300.00579 * 17 15 13 21 21 C 1.38218 * 120.00135 * 0.55285 * 6 5 4 22 22 C 1.38213 * 119.99892 * 278.42430 * 3 2 1 23 23 N 1.48025 * 119.99970 * 359.97438 * 22 3 2 24 24 O 1.21800 * 119.99965 * 185.78168 * 23 22 3 25 25 O 1.21803 * 119.99951 * 5.78519 * 23 22 3 26 26 H 1.09005 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47450 * 299.99773 * 1 2 3 28 28 H 1.08997 * 109.47160 * 60.00599 * 1 2 3 29 29 H 1.08998 * 109.47197 * 239.99487 * 2 1 3 30 30 H 1.09005 * 109.46771 * 119.99891 * 2 1 3 31 31 H 1.08005 * 119.99884 * 359.97438 * 4 3 2 32 32 H 1.07992 * 120.00423 * 179.72276 * 5 4 3 33 33 H 0.96998 * 120.00005 * 244.99432 * 10 7 6 34 34 H 1.08995 * 109.47300 * 284.99894 * 11 10 7 35 35 H 1.09006 * 109.47259 * 44.99811 * 11 10 7 36 36 H 1.09004 * 109.47344 * 300.00018 * 12 11 10 37 37 H 1.09000 * 109.47329 * 59.99718 * 12 11 10 38 38 H 0.97010 * 119.99872 * 180.02562 * 16 15 13 39 39 H 1.07997 * 119.99946 * 179.72796 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4278 2.0143 1.1844 5 6 2.8830 3.3192 1.1853 6 6 2.9534 4.0275 0.0000 7 16 3.5408 5.6888 -0.0001 8 8 4.3549 5.8266 1.1565 9 8 4.0097 5.9486 -1.3160 10 7 2.2289 6.6725 0.2316 11 6 1.4888 6.6210 1.4949 12 6 0.5860 7.8511 1.6075 13 6 -0.1759 7.7979 2.9067 14 1 -0.0304 6.9697 3.5844 15 6 -1.0578 8.8069 3.2305 16 7 -1.2346 9.8157 2.4054 17 14 -2.0028 8.7405 4.8405 18 1 -1.0456 8.7226 5.9758 19 1 -2.8788 9.9345 4.9499 20 1 -2.8352 7.5114 4.8756 21 6 2.5577 3.4344 -1.1840 22 6 2.0973 2.1308 -1.1841 23 7 1.6741 1.4954 -2.4522 24 8 1.8293 2.0815 -3.5086 25 8 1.1706 0.3864 -2.4394 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.3763 1.4597 2.1098 32 1 3.1877 3.7842 2.1112 33 1 1.9507 7.2829 -0.4690 34 1 0.8782 5.7185 1.5217 35 1 2.1919 6.6088 2.3278 36 1 1.1967 8.7536 1.5808 37 1 -0.1170 7.8633 0.7747 38 1 -1.8549 10.5258 2.6335 39 1 2.6085 3.9892 -2.1092 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572516240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:23 Heat of formation + Delta-G solvation = -61.185366 kcal Electronic energy + Delta-G solvation = -25747.536025 eV Core-core repulsion = 21785.400298 eV Total energy + Delta-G solvation = -3962.135727 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -42.54910 -39.98347 -37.32514 -37.00635 -35.92587 -35.60514 -34.70585 -32.86481 -32.39570 -30.48899 -29.29353 -26.87334 -24.83600 -24.63156 -23.19594 -22.06971 -21.31898 -20.24479 -19.07571 -18.81768 -17.84952 -17.49997 -17.19884 -16.64459 -16.32621 -16.11219 -15.57536 -14.77949 -14.66420 -14.36742 -14.29504 -14.12743 -13.90383 -13.49826 -12.77309 -12.68146 -12.60486 -12.17411 -12.07116 -11.99975 -11.95946 -11.87498 -11.61473 -11.44591 -11.41550 -11.22889 -11.11193 -10.76669 -10.73237 -10.59865 -10.15420 -9.88415 -9.71690 -9.40215 -9.15267 -8.50904 -6.17207 -4.21766 -0.49040 0.05659 0.35642 0.99741 1.10882 2.55129 3.05383 3.23379 3.29103 3.30435 3.63228 3.80470 3.85377 4.08923 4.29412 4.32747 4.45399 4.70347 4.74831 4.88071 4.94281 5.03140 5.19710 5.23333 5.31798 5.40219 5.53364 5.53542 5.70844 5.76075 5.86629 5.97916 6.22374 6.25561 6.54152 7.18423 7.42597 7.43456 7.51799 7.79537 8.16072 8.83458 9.43495 10.94014 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.003514 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.742121 B = 7966.570832 C = 9030.534901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C 0.033 3.967 4 C -0.139 4.139 5 C 0.035 3.965 6 C -0.682 4.682 7 S 2.694 3.306 8 O -0.948 6.948 9 O -0.959 6.959 10 N -1.106 6.106 11 C 0.115 3.885 12 C 0.018 3.982 13 C -0.528 4.528 14 H 0.058 0.942 15 C 0.061 3.939 16 N -0.891 5.891 17 Si 0.896 3.104 18 H -0.275 1.275 19 H -0.286 1.286 20 H -0.276 1.276 21 C 0.051 3.949 22 C -0.069 4.069 23 N 0.033 4.967 24 O -0.162 6.162 25 O -0.152 6.152 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.421 0.579 34 H 0.051 0.949 35 H 0.071 0.929 36 H 0.028 0.972 37 H 0.025 0.975 38 H 0.264 0.736 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.800 -17.950 -3.944 19.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.144 4.144 3 C 0.031 3.969 4 C -0.158 4.158 5 C 0.016 3.984 6 C -0.766 4.766 7 S 2.780 3.220 8 O -0.938 6.938 9 O -0.949 6.949 10 N -0.869 5.869 11 C -0.009 4.009 12 C -0.021 4.021 13 C -0.567 4.567 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.529 5.529 17 Si 0.724 3.276 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.202 1.202 21 C 0.031 3.969 22 C -0.153 4.153 23 N 0.550 4.450 24 O -0.376 6.376 25 O -0.367 6.367 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.124 0.876 30 H 0.102 0.898 31 H 0.175 0.825 32 H 0.181 0.819 33 H 0.256 0.744 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges 7.807 -17.389 -3.335 19.350 hybrid contribution -1.377 -0.376 0.283 1.455 sum 6.430 -17.764 -3.053 19.137 Atomic orbital electron populations 1.21690 0.92617 1.03142 1.02358 1.21136 0.98099 0.89994 1.05196 1.20244 0.89065 0.97019 0.90544 1.21324 1.01288 0.95612 0.97608 1.21491 0.86211 0.93265 0.97448 1.31542 1.18983 1.27869 0.98189 1.02094 0.73510 0.72771 0.73671 1.93609 1.64675 1.84942 1.50547 1.93597 1.78880 1.83929 1.38501 1.55507 1.51180 1.53485 1.26725 1.21736 0.95055 1.02339 0.81801 1.19287 0.93715 0.91202 0.97879 1.21004 1.24122 1.07633 1.03966 0.92331 1.24994 0.96772 0.95256 0.97131 1.69940 1.36219 1.10453 1.36295 0.86588 0.79817 0.77529 0.83671 1.20045 1.21175 1.20192 1.20752 0.85581 0.91472 0.99115 1.20996 1.13798 0.96000 0.84552 1.43451 0.98473 1.00534 1.02502 1.94584 1.59480 1.64816 1.18692 1.94459 1.43209 1.05466 1.93566 0.91020 0.92508 0.91932 0.87639 0.89758 0.82534 0.81949 0.74363 0.93027 0.91019 0.95367 0.95704 0.92644 0.81335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.40 37.16 0.35 -0.78 16 2 C -0.11 -0.83 5.33 -27.88 -0.15 -0.98 16 3 C 0.03 0.32 5.13 -104.63 -0.54 -0.22 16 4 C -0.14 -1.18 9.67 -39.59 -0.38 -1.56 16 5 C 0.03 0.35 9.52 -39.58 -0.38 -0.03 16 6 C -0.68 -8.06 5.95 -39.58 -0.24 -8.30 16 7 S 2.69 37.08 5.74 -107.50 -0.62 36.46 16 8 O -0.95 -15.10 16.76 -57.17 -0.96 -16.05 16 9 O -0.96 -14.90 17.28 -57.17 -0.99 -15.89 16 10 N -1.11 -16.33 6.00 -10.61 -0.06 -16.40 16 11 C 0.12 2.03 6.16 -4.04 -0.02 2.00 16 12 C 0.02 0.41 5.11 -27.88 -0.14 0.27 16 13 C -0.53 -13.65 9.11 -34.44 -0.31 -13.97 16 14 H 0.06 1.43 7.74 -52.49 -0.41 1.03 16 15 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 16 N -0.89 -25.22 13.29 55.43 0.74 -24.49 16 17 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 21 C 0.05 0.62 9.03 -39.58 -0.36 0.26 16 22 C -0.07 -0.83 6.83 -79.95 -0.55 -1.37 16 23 N 0.03 0.43 4.45 33.96 0.15 0.58 16 24 O -0.16 -2.31 18.46 -29.46 -0.54 -2.85 16 25 O -0.15 -1.89 13.51 -29.46 -0.40 -2.29 16 26 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.61 6.58 -51.93 -0.34 0.27 16 29 H 0.11 0.89 5.96 -51.93 -0.31 0.58 16 30 H 0.08 0.46 8.02 -51.93 -0.42 0.04 16 31 H 0.16 0.81 8.05 -52.48 -0.42 0.39 16 32 H 0.16 1.37 7.62 -52.49 -0.40 0.97 16 33 H 0.42 5.78 8.65 -34.47 -0.30 5.48 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.07 1.24 7.75 -51.93 -0.40 0.83 16 36 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.17 1.94 7.18 -52.49 -0.38 1.57 16 LS Contribution 349.63 15.07 5.27 5.27 Total: -1.00 -32.32 349.63 -9.87 -42.19 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -4.62 Total: 1.25 kcal Atomic # 6 Polarization: -20.32 SS G_CDS: -2.81 Total: -23.13 kcal Atomic # 7 Polarization: -41.13 SS G_CDS: 0.82 Total: -40.30 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -2.89 Total: -37.08 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Atomic # 16 Polarization: 37.08 SS G_CDS: -0.62 Total: 36.46 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.32 -9.87 -42.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572516240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.992 kcal (2) G-P(sol) polarization free energy of solvation -32.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds