Wall clock time and date at job start Tue Mar 31 2020 15:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50701 * 109.47028 * 2 1 4 4 C 1.38252 * 120.00111 * 98.40507 * 3 2 1 5 5 C 1.38213 * 120.00398 * 180.27764 * 4 3 2 6 6 C 1.38261 * 119.99303 * 359.46706 * 5 4 3 7 7 S 1.76202 * 120.00031 * 180.28239 * 6 5 4 8 8 O 1.42104 * 106.40132 * 23.80689 * 7 6 5 9 9 O 1.42094 * 106.40546 * 156.73247 * 7 6 5 10 10 N 1.65605 * 107.21474 * 270.27134 * 7 6 5 11 11 C 1.46502 * 119.99865 * 64.99956 * 10 7 6 12 12 C 1.52994 * 109.47099 * 164.99670 * 11 10 7 13 13 C 1.50704 * 109.47548 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99355 * 0.02562 * 13 12 11 15 15 C 1.37876 * 120.00152 * 179.97438 * 13 12 11 16 16 N 1.31509 * 120.00013 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99765 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46989 * 60.00475 * 17 15 13 19 19 H 1.48494 * 109.47048 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47360 * 300.00579 * 17 15 13 21 21 C 1.38218 * 120.00135 * 0.55285 * 6 5 4 22 22 C 1.38213 * 119.99892 * 278.42430 * 3 2 1 23 23 N 1.48025 * 119.99970 * 359.97438 * 22 3 2 24 24 O 1.21800 * 119.99965 * 185.78168 * 23 22 3 25 25 O 1.21803 * 119.99951 * 5.78519 * 23 22 3 26 26 H 1.09005 * 109.47108 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47450 * 299.99773 * 1 2 3 28 28 H 1.08997 * 109.47160 * 60.00599 * 1 2 3 29 29 H 1.08998 * 109.47197 * 239.99487 * 2 1 3 30 30 H 1.09005 * 109.46771 * 119.99891 * 2 1 3 31 31 H 1.08005 * 119.99884 * 359.97438 * 4 3 2 32 32 H 1.07992 * 120.00423 * 179.72276 * 5 4 3 33 33 H 0.96998 * 120.00005 * 244.99432 * 10 7 6 34 34 H 1.08995 * 109.47300 * 284.99894 * 11 10 7 35 35 H 1.09006 * 109.47259 * 44.99811 * 11 10 7 36 36 H 1.09004 * 109.47344 * 300.00018 * 12 11 10 37 37 H 1.09000 * 109.47329 * 59.99718 * 12 11 10 38 38 H 0.97010 * 119.99872 * 180.02562 * 16 15 13 39 39 H 1.07997 * 119.99946 * 179.72796 * 21 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.4278 2.0143 1.1844 5 6 2.8830 3.3192 1.1853 6 6 2.9534 4.0275 0.0000 7 16 3.5408 5.6888 -0.0001 8 8 4.3549 5.8266 1.1565 9 8 4.0097 5.9486 -1.3160 10 7 2.2289 6.6725 0.2316 11 6 1.4888 6.6210 1.4949 12 6 0.5860 7.8511 1.6075 13 6 -0.1759 7.7979 2.9067 14 1 -0.0304 6.9697 3.5844 15 6 -1.0578 8.8069 3.2305 16 7 -1.2346 9.8157 2.4054 17 14 -2.0028 8.7405 4.8405 18 1 -1.0456 8.7226 5.9758 19 1 -2.8788 9.9345 4.9499 20 1 -2.8352 7.5114 4.8756 21 6 2.5577 3.4344 -1.1840 22 6 2.0973 2.1308 -1.1841 23 7 1.6741 1.4954 -2.4522 24 8 1.8293 2.0815 -3.5086 25 8 1.1706 0.3864 -2.4394 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 2.3763 1.4597 2.1098 32 1 3.1877 3.7842 2.1112 33 1 1.9507 7.2829 -0.4690 34 1 0.8782 5.7185 1.5217 35 1 2.1919 6.6088 2.3278 36 1 1.1967 8.7536 1.5808 37 1 -0.1170 7.8633 0.7747 38 1 -1.8549 10.5258 2.6335 39 1 2.6085 3.9892 -2.1092 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572516240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:22 Heat of formation + Delta-G solvation = -82.554228 kcal Electronic energy + Delta-G solvation = -25748.462649 eV Core-core repulsion = 21785.400298 eV Total energy + Delta-G solvation = -3963.062351 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.51291 -40.80830 -38.53727 -37.98228 -37.14613 -37.06122 -35.45621 -34.73989 -33.22889 -31.23720 -31.03227 -27.78966 -26.43296 -25.59352 -24.05273 -23.00046 -22.80578 -21.26173 -20.15506 -19.85335 -18.87058 -18.76417 -18.20415 -18.15281 -17.49912 -16.95477 -16.76941 -16.44059 -15.61949 -15.54973 -15.44609 -14.98938 -14.86950 -14.44338 -14.25306 -13.62829 -13.47889 -13.39166 -13.30812 -13.28576 -13.22320 -12.97923 -12.80844 -12.68698 -12.56050 -12.46310 -12.40945 -12.30385 -12.00633 -11.53368 -11.50699 -11.33256 -11.00923 -10.67184 -10.60007 -10.37453 -8.19716 -6.30532 -1.39173 -0.91777 -0.66081 0.09429 0.19126 1.45208 1.47055 1.54577 1.67279 1.98558 2.43693 2.53407 2.97635 3.07388 3.16041 3.22695 3.52085 3.59923 3.79835 4.07255 4.14702 4.21149 4.29227 4.33418 4.51903 4.52870 4.61335 4.73552 4.80861 4.91646 4.95743 5.02971 5.10861 5.23599 5.40629 5.50507 5.63283 5.80742 5.95387 6.20847 6.41090 6.85892 7.39314 8.92101 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.012371 B = 0.003514 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.742121 B = 7966.570832 C = 9030.534901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.107 4.107 3 C 0.036 3.964 4 C -0.123 4.123 5 C 0.031 3.969 6 C -0.685 4.685 7 S 2.716 3.284 8 O -0.968 6.968 9 O -0.980 6.980 10 N -1.110 6.110 11 C 0.129 3.871 12 C 0.017 3.983 13 C -0.542 4.542 14 H 0.073 0.927 15 C 0.002 3.998 16 N -0.932 5.932 17 Si 0.963 3.037 18 H -0.265 1.265 19 H -0.290 1.290 20 H -0.265 1.265 21 C 0.038 3.962 22 C -0.085 4.085 23 N 0.032 4.968 24 O -0.215 6.215 25 O -0.124 6.124 26 H 0.087 0.913 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.098 0.902 30 H 0.120 0.880 31 H 0.202 0.798 32 H 0.182 0.818 33 H 0.423 0.577 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.001 0.999 37 H 0.005 0.995 38 H 0.263 0.737 39 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.678 -20.707 -1.341 21.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.143 4.143 3 C 0.034 3.966 4 C -0.142 4.142 5 C 0.012 3.988 6 C -0.772 4.772 7 S 2.805 3.195 8 O -0.958 6.958 9 O -0.971 6.971 10 N -0.872 5.872 11 C 0.004 3.996 12 C -0.022 4.022 13 C -0.580 4.580 14 H 0.091 0.909 15 C -0.196 4.196 16 N -0.572 5.572 17 Si 0.788 3.212 18 H -0.190 1.190 19 H -0.216 1.216 20 H -0.189 1.189 21 C 0.018 3.982 22 C -0.169 4.169 23 N 0.547 4.453 24 O -0.416 6.416 25 O -0.349 6.349 26 H 0.106 0.894 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.116 0.884 30 H 0.138 0.862 31 H 0.219 0.781 32 H 0.200 0.800 33 H 0.259 0.741 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.020 0.980 37 H 0.023 0.977 38 H 0.072 0.928 39 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 7.735 -20.034 -0.809 21.490 hybrid contribution -1.343 0.328 -0.492 1.467 sum 6.392 -19.705 -1.301 20.757 Atomic orbital electron populations 1.21704 0.92729 1.03973 1.01452 1.21242 0.97796 0.88689 1.06609 1.20674 0.88065 0.97921 0.89945 1.21805 0.98942 0.94861 0.98563 1.21880 0.85621 0.94062 0.97209 1.31065 1.20575 1.26446 0.99146 1.01154 0.72692 0.73005 0.72621 1.93578 1.65378 1.85699 1.51139 1.93569 1.79224 1.84775 1.39500 1.55396 1.51101 1.54597 1.26062 1.21424 0.94717 1.00395 0.83103 1.19175 0.93800 0.92782 0.96426 1.21549 1.23788 1.07738 1.04973 0.90864 1.25926 0.98043 0.95015 1.00631 1.70084 1.37307 1.11402 1.38429 0.85522 0.78503 0.77630 0.79542 1.19018 1.21563 1.18944 1.20750 0.86289 0.92003 0.99179 1.21173 1.14899 0.96265 0.84575 1.43658 0.98264 1.00502 1.02878 1.94595 1.61955 1.65453 1.19637 1.94423 1.41572 1.05261 1.93673 0.89385 0.91842 0.94377 0.88424 0.86187 0.78148 0.80030 0.74087 0.90914 0.90323 0.98012 0.97660 0.92828 0.82027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.40 71.98 0.68 -1.14 16 2 C -0.11 -1.25 5.33 29.85 0.16 -1.09 16 3 C 0.04 0.58 5.13 -19.87 -0.10 0.48 16 4 C -0.12 -1.52 9.67 22.27 0.22 -1.31 16 5 C 0.03 0.52 9.52 22.27 0.21 0.73 16 6 C -0.69 -15.27 5.95 22.27 0.13 -15.14 16 7 S 2.72 73.66 5.74 -56.49 -0.32 73.33 16 8 O -0.97 -29.80 16.76 -128.00 -2.15 -31.95 16 9 O -0.98 -30.97 17.28 -128.00 -2.21 -33.18 16 10 N -1.11 -32.72 6.00 -187.49 -1.12 -33.85 16 11 C 0.13 4.40 6.16 86.38 0.53 4.94 16 12 C 0.02 0.79 5.11 29.85 0.15 0.95 16 13 C -0.54 -27.73 9.11 25.60 0.23 -27.50 16 14 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 15 C 0.00 0.12 5.46 84.66 0.46 0.58 16 16 N -0.93 -53.78 13.29 21.45 0.28 -53.50 16 17 Si 0.96 41.20 29.54 68.60 2.03 43.22 16 18 H -0.27 -10.85 7.11 99.48 0.71 -10.14 16 19 H -0.29 -12.45 7.11 99.48 0.71 -11.75 16 20 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 21 C 0.04 0.91 9.03 22.27 0.20 1.12 16 22 C -0.08 -1.93 6.83 36.37 0.25 -1.68 16 23 N 0.03 0.85 4.45 -46.46 -0.21 0.64 16 24 O -0.22 -6.49 18.46 18.89 0.35 -6.14 16 25 O -0.12 -2.99 13.51 18.88 0.26 -2.74 16 26 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.04 0.68 6.58 -2.39 -0.02 0.66 16 29 H 0.10 1.35 5.96 -2.39 -0.01 1.34 16 30 H 0.12 0.61 8.02 -2.38 -0.02 0.59 16 31 H 0.20 0.73 8.05 -2.91 -0.02 0.71 16 32 H 0.18 2.34 7.62 -2.91 -0.02 2.32 16 33 H 0.42 12.01 8.65 -96.75 -0.84 11.18 16 34 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 35 H 0.08 2.58 7.75 -2.38 -0.02 2.57 16 36 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.26 14.43 8.31 -92.70 -0.77 13.66 16 39 H 0.16 3.97 7.18 -2.91 -0.02 3.95 16 Total: -1.00 -71.04 349.63 0.28 -70.76 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: 0.26 Total: 12.47 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 3.12 Total: -39.07 kcal Atomic # 7 Polarization: -85.66 SS G_CDS: -1.05 Total: -86.71 kcal Atomic # 8 Polarization: -70.25 SS G_CDS: -3.75 Total: -74.00 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 73.66 SS G_CDS: -0.32 Total: 73.33 kcal Total: -71.04 0.28 -70.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572516240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.798 kcal (2) G-P(sol) polarization free energy of solvation -71.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds