Wall clock time and date at job start Tue Mar 31 2020 15:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50704 * 109.46796 * 2 1 4 4 C 1.38262 * 119.99922 * 102.41404 * 3 2 1 5 5 C 1.38211 * 120.00067 * 180.30437 * 4 3 2 6 6 C 1.38254 * 119.99896 * 359.45869 * 5 4 3 7 7 S 1.76197 * 120.00138 * 180.27890 * 6 5 4 8 8 O 1.42097 * 106.40385 * 203.54668 * 7 6 5 9 9 O 1.42101 * 106.40184 * 336.46465 * 7 6 5 10 10 N 1.65599 * 107.21819 * 90.00369 * 7 6 5 11 11 C 1.46500 * 119.99986 * 64.99986 * 10 7 6 12 12 H 1.09007 * 109.47385 * 335.00036 * 11 10 7 13 13 C 1.52996 * 109.47022 * 94.99991 * 11 10 7 14 14 C 1.50696 * 109.47439 * 215.00472 * 11 10 7 15 15 H 1.08008 * 120.00103 * 359.97438 * 14 11 10 16 16 C 1.37877 * 120.00370 * 180.02562 * 14 11 10 17 17 N 1.31512 * 119.99601 * 359.97438 * 16 14 11 18 18 Si 1.86801 * 120.00230 * 179.97438 * 16 14 11 19 19 H 1.48492 * 109.47033 * 89.99707 * 18 16 14 20 20 H 1.48500 * 109.46985 * 209.99863 * 18 16 14 21 21 H 1.48507 * 109.46764 * 329.99565 * 18 16 14 22 22 C 1.38213 * 119.99888 * 0.26250 * 6 5 4 23 23 C 1.38209 * 120.00051 * 282.18075 * 3 2 1 24 24 N 1.48012 * 120.00260 * 359.97438 * 23 3 2 25 25 O 1.21799 * 120.00212 * 174.37333 * 24 23 3 26 26 O 1.21803 * 120.00176 * 354.37750 * 24 23 3 27 27 H 1.09004 * 109.47117 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47428 * 299.99632 * 1 2 3 29 29 H 1.09001 * 109.47236 * 59.99876 * 1 2 3 30 30 H 1.09003 * 109.47428 * 240.00368 * 2 1 3 31 31 H 1.09001 * 109.47236 * 120.00124 * 2 1 3 32 32 H 1.08002 * 119.99522 * 0.03897 * 4 3 2 33 33 H 1.08002 * 119.99960 * 179.74461 * 5 4 3 34 34 H 0.97002 * 120.00097 * 245.00420 * 10 7 6 35 35 H 1.09006 * 109.47450 * 179.97438 * 13 11 10 36 36 H 1.09001 * 109.47694 * 299.99906 * 13 11 10 37 37 H 1.09002 * 109.47221 * 60.00517 * 13 11 10 38 38 H 0.97010 * 119.99733 * 180.02562 * 17 16 14 39 39 H 1.08003 * 119.99919 * 179.97438 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 6 2.5053 1.9869 1.1694 5 6 2.9601 3.2920 1.1708 6 6 2.9524 4.0280 0.0005 7 16 3.5390 5.6894 0.0006 8 8 2.9224 6.3328 -1.1062 9 8 3.4191 6.1571 1.3371 10 7 5.1602 5.6369 -0.3327 11 6 5.6247 5.1599 -1.6377 12 1 4.8761 4.4952 -2.0691 13 6 5.8435 6.3540 -2.5688 14 6 6.9216 4.4118 -1.4667 15 1 7.3568 4.3029 -0.4842 16 6 7.5533 3.8672 -2.5646 17 7 7.0238 4.0002 -3.7610 18 14 9.1614 2.9405 -2.3527 19 1 8.8764 1.5028 -2.1142 20 1 9.9818 3.0853 -3.5819 21 1 9.9042 3.4969 -1.1933 22 6 2.4848 3.4603 -1.1698 23 6 2.0245 2.1566 -1.1700 24 7 1.5233 1.5489 -2.4231 25 8 1.4202 2.2266 -3.4299 26 8 1.2140 0.3710 -2.4476 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.5155 1.4104 2.0827 33 1 3.3258 3.7354 2.0852 34 1 5.8024 5.9219 0.3361 35 1 6.1895 5.9991 -3.5397 36 1 4.9054 6.8950 -2.6926 37 1 6.5922 7.0186 -2.1376 38 1 7.4680 3.6167 -4.5334 39 1 2.4784 4.0353 -2.0840 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574752432.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:39 Heat of formation + Delta-G solvation = -75.927159 kcal Electronic energy + Delta-G solvation = -26755.507429 eV Core-core repulsion = 22792.732450 eV Total energy + Delta-G solvation = -3962.774979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.51628 -40.76962 -38.47227 -37.97407 -37.33861 -37.05097 -35.44109 -34.18611 -33.19359 -31.21448 -30.20963 -27.79829 -27.27664 -25.53399 -24.04836 -22.91744 -22.83498 -21.26006 -19.95126 -19.89852 -19.14875 -18.80216 -18.14177 -17.98277 -17.41938 -17.04634 -16.84755 -16.25978 -15.45081 -15.38789 -15.09023 -14.80323 -14.58878 -14.28716 -14.05622 -13.66870 -13.56710 -13.36997 -13.30378 -13.16980 -13.06303 -12.88444 -12.86697 -12.63604 -12.52995 -12.43882 -12.34358 -12.25468 -12.06484 -12.02350 -11.53231 -11.18348 -10.95889 -10.66677 -10.55986 -10.21344 -8.17819 -6.33547 -1.36509 -0.81646 -0.57397 0.11876 0.22874 1.41671 1.44360 1.53532 1.75368 2.06722 2.41262 2.62278 3.01811 3.09734 3.12738 3.29424 3.56126 3.65580 3.85397 4.10240 4.22292 4.28553 4.33239 4.41407 4.54817 4.61288 4.73351 4.84600 4.92296 5.01811 5.05908 5.11007 5.12641 5.22243 5.41333 5.53724 5.68490 5.99127 6.01368 6.35878 6.42668 6.78466 7.37311 8.87172 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010548 B = 0.005340 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.825012 B = 5242.412102 C = 6396.870865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.111 4.111 3 C 0.033 3.967 4 C -0.123 4.123 5 C 0.036 3.964 6 C -0.686 4.686 7 S 2.709 3.291 8 O -0.986 6.986 9 O -0.970 6.970 10 N -1.093 6.093 11 C 0.277 3.723 12 H 0.018 0.982 13 C -0.155 4.155 14 C -0.537 4.537 15 H 0.076 0.924 16 C 0.016 3.984 17 N -0.916 5.916 18 Si 0.960 3.040 19 H -0.279 1.279 20 H -0.288 1.288 21 H -0.260 1.260 22 C 0.034 3.966 23 C -0.086 4.086 24 N 0.034 4.966 25 O -0.232 6.232 26 O -0.114 6.114 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.029 0.971 30 H 0.098 0.902 31 H 0.124 0.876 32 H 0.209 0.791 33 H 0.190 0.810 34 H 0.423 0.577 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.043 0.957 38 H 0.264 0.736 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.842 -7.595 13.665 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.148 4.148 3 C 0.032 3.968 4 C -0.142 4.142 5 C 0.017 3.983 6 C -0.772 4.772 7 S 2.798 3.202 8 O -0.976 6.976 9 O -0.960 6.960 10 N -0.855 5.855 11 C 0.172 3.828 12 H 0.036 0.964 13 C -0.214 4.214 14 C -0.577 4.577 15 H 0.094 0.906 16 C -0.185 4.185 17 N -0.554 5.554 18 Si 0.785 3.215 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.184 1.184 22 C 0.013 3.987 23 C -0.171 4.171 24 N 0.549 4.451 25 O -0.429 6.429 26 O -0.343 6.343 27 H 0.109 0.891 28 H 0.087 0.913 29 H 0.048 0.952 30 H 0.116 0.884 31 H 0.142 0.858 32 H 0.226 0.774 33 H 0.207 0.793 34 H 0.259 0.741 35 H 0.088 0.912 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -9.207 -6.531 13.986 17.973 hybrid contribution 1.004 -0.844 -1.169 1.757 sum -8.203 -7.376 12.816 16.910 Atomic orbital electron populations 1.21696 0.92613 1.04099 1.01219 1.21307 0.97897 0.88565 1.06995 1.20715 0.88673 0.97692 0.89753 1.21862 0.98690 0.95049 0.98571 1.21868 0.86435 0.93439 0.96564 1.31167 1.18460 1.28070 0.99537 1.01298 0.72822 0.73505 0.72618 1.93562 1.76466 1.72680 1.54938 1.93540 1.86405 1.79346 1.36703 1.55329 1.24174 1.81023 1.24948 1.18271 0.94974 0.91533 0.78017 0.96440 1.22158 0.98887 0.98066 1.02332 1.21603 1.07030 1.34481 0.94557 0.90590 1.25724 1.00889 0.96990 0.94853 1.70017 1.40723 1.45379 0.99288 0.85522 0.79430 0.78632 0.77870 1.20516 1.21347 1.18408 1.20704 0.86982 0.92246 0.98732 1.21197 1.14153 0.96238 0.85463 1.43670 0.98017 1.00640 1.02766 1.94621 1.61408 1.62326 1.24518 1.94357 1.49220 0.99531 1.91163 0.89058 0.91270 0.95228 0.88364 0.85750 0.77425 0.79267 0.74113 0.91243 0.95190 0.93808 0.92634 0.83876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.40 71.98 0.68 -1.46 16 2 C -0.11 -1.82 5.35 29.85 0.16 -1.66 16 3 C 0.03 0.75 5.15 -19.86 -0.10 0.64 16 4 C -0.12 -2.06 9.67 22.27 0.22 -1.85 16 5 C 0.04 0.77 9.52 22.27 0.21 0.98 16 6 C -0.69 -20.87 5.82 22.27 0.13 -20.74 16 7 S 2.71 92.37 5.65 -56.49 -0.32 92.05 16 8 O -0.99 -40.74 16.54 -128.00 -2.12 -42.86 16 9 O -0.97 -31.92 17.28 -128.00 -2.21 -34.13 16 10 N -1.09 -40.02 5.46 -172.52 -0.94 -40.96 16 11 C 0.28 12.87 2.76 44.24 0.12 12.99 16 12 H 0.02 0.90 7.23 -2.38 -0.02 0.88 16 13 C -0.15 -7.38 9.29 71.98 0.67 -6.71 16 14 C -0.54 -26.39 8.76 25.60 0.22 -26.17 16 15 H 0.08 3.48 7.81 -2.91 -0.02 3.46 16 16 C 0.02 0.82 5.30 84.65 0.45 1.26 16 17 N -0.92 -50.44 11.32 21.45 0.24 -50.20 16 18 Si 0.96 40.57 29.54 68.60 2.03 42.60 16 19 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.29 -12.25 7.11 99.48 0.71 -11.54 16 21 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 22 C 0.03 1.18 8.41 22.27 0.19 1.37 16 23 C -0.09 -2.73 6.81 36.37 0.25 -2.49 16 24 N 0.03 1.21 4.39 -46.47 -0.20 1.00 16 25 O -0.23 -9.46 18.46 18.89 0.35 -9.11 16 26 O -0.11 -3.57 13.64 18.88 0.26 -3.31 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.03 0.61 6.64 -2.39 -0.02 0.60 16 30 H 0.10 1.96 5.88 -2.39 -0.01 1.94 16 31 H 0.12 1.08 7.98 -2.39 -0.02 1.06 16 32 H 0.21 1.24 8.02 -2.91 -0.02 1.21 16 33 H 0.19 2.82 7.62 -2.91 -0.02 2.80 16 34 H 0.42 13.36 8.83 -96.74 -0.85 12.50 16 35 H 0.07 3.66 6.07 -2.38 -0.01 3.64 16 36 H 0.03 1.36 7.64 -2.39 -0.02 1.34 16 37 H 0.04 1.94 8.14 -2.39 -0.02 1.92 16 38 H 0.26 14.00 8.31 -92.70 -0.77 13.23 16 39 H 0.14 5.63 7.18 -2.91 -0.02 5.61 16 Total: -1.00 -69.35 343.46 0.52 -68.83 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.25 Total: 19.90 kcal Atomic # 6 Polarization: -47.01 SS G_CDS: 3.19 Total: -43.82 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -0.90 Total: -90.16 kcal Atomic # 8 Polarization: -85.68 SS G_CDS: -3.72 Total: -89.40 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Atomic # 16 Polarization: 92.37 SS G_CDS: -0.32 Total: 92.05 kcal Total: -69.35 0.52 -68.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574752432.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.100 kcal (2) G-P(sol) polarization free energy of solvation -69.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds