Wall clock time and date at job start Tue Mar 31 2020 14:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00247 * 2 1 4 4 H 1.48493 * 109.47081 * 239.99807 * 3 2 1 5 5 H 1.48506 * 109.46794 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47358 * 119.99753 * 3 2 1 7 7 C 1.37879 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00185 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99733 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.46929 * 179.97438 * 9 7 2 11 11 C 1.46959 * 110.99832 * 169.99936 * 10 9 7 12 12 C 1.53058 * 109.36419 * 183.18928 * 11 10 9 13 13 N 1.46955 * 109.36051 * 301.59955 * 12 11 10 14 14 C 1.46906 * 110.99744 * 183.18754 * 13 12 11 15 15 C 1.50703 * 109.47109 * 169.99905 * 14 13 12 16 16 C 1.38227 * 119.98647 * 269.72779 * 15 14 13 17 17 C 1.38363 * 120.00912 * 179.72731 * 16 15 14 18 18 Cl 1.73601 * 120.00353 * 180.27195 * 17 16 15 19 19 C 1.38328 * 119.98804 * 0.56444 * 17 16 15 20 20 C 1.38332 * 119.97179 * 359.71179 * 19 17 16 21 21 Cl 1.73600 * 120.00338 * 180.02562 * 20 19 17 22 22 C 1.38219 * 119.98670 * 90.00223 * 15 14 13 23 23 C 1.46959 * 110.88319 * 59.32174 * 13 12 11 24 24 C 1.46959 * 111.00113 * 293.79952 * 10 9 7 25 25 H 0.97003 * 119.99617 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46768 * 59.99733 * 9 7 2 27 27 H 1.09004 * 109.47174 * 299.99655 * 9 7 2 28 28 H 1.08995 * 109.48972 * 63.22103 * 11 10 9 29 29 H 1.08998 * 109.48999 * 303.15503 * 11 10 9 30 30 H 1.08994 * 109.48935 * 181.63483 * 12 11 10 31 31 H 1.08999 * 109.48934 * 61.56553 * 12 11 10 32 32 H 1.08992 * 109.47459 * 289.99824 * 14 13 12 33 33 H 1.09004 * 109.47040 * 49.99975 * 14 13 12 34 34 H 1.08003 * 119.99271 * 0.02562 * 16 15 14 35 35 H 1.07994 * 120.01167 * 179.72551 * 19 17 16 36 36 H 1.08001 * 119.99152 * 359.97438 * 22 15 14 37 37 H 1.08995 * 109.48972 * 60.64434 * 23 13 12 38 38 H 1.08998 * 109.48999 * 180.71033 * 23 13 12 39 39 H 1.08999 * 109.48803 * 296.77931 * 24 10 9 40 40 H 1.08994 * 109.48671 * 56.84618 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5208 -4.8940 0.2388 12 6 2.5563 -6.0188 0.3105 13 7 3.3193 -6.0593 -0.9448 14 6 4.2739 -7.1759 -0.9448 15 6 4.8579 -7.3375 -2.3247 16 6 4.2451 -8.1715 -3.2409 17 6 4.7777 -8.3158 -4.5097 18 17 4.0039 -9.3578 -5.6626 19 6 5.9302 -7.6344 -4.8574 20 6 6.5462 -6.8044 -3.9381 21 17 7.9923 -5.9483 -4.3738 22 6 6.0094 -6.6561 -2.6716 23 6 4.0041 -4.7810 -1.1831 24 6 2.9686 -3.6563 -1.2548 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 0.8252 -5.0915 -0.5768 29 1 0.9732 -4.8433 1.1799 30 1 2.0484 -6.9718 0.4582 31 1 3.2354 -5.8354 1.1431 32 1 5.0738 -6.9701 -0.2336 33 1 3.7599 -8.0934 -0.6581 34 1 3.3476 -8.7068 -2.9679 35 1 6.3487 -7.7503 -5.8462 36 1 6.4900 -6.0077 -1.9540 37 1 4.6996 -4.5835 -0.3675 38 1 4.5516 -4.8316 -2.1242 39 1 2.2895 -3.8397 -2.0874 40 1 3.4765 -2.7033 -1.4025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589257481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:49 Heat of formation + Delta-G solvation = 20.786706 kcal Electronic energy + Delta-G solvation = -22962.039424 eV Core-core repulsion = 19442.123731 eV Total energy + Delta-G solvation = -3519.915693 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.09565 -38.56740 -37.02356 -36.65755 -35.19716 -32.72853 -31.63721 -31.01639 -30.36708 -28.32828 -26.11570 -24.02490 -23.42809 -22.79863 -21.68064 -21.23218 -19.21012 -17.44406 -16.36021 -16.26170 -16.12240 -15.90256 -14.79077 -14.68098 -14.53621 -14.42345 -14.16818 -14.08335 -13.60484 -13.27774 -13.01456 -12.61745 -12.34607 -12.22482 -12.05509 -11.78533 -11.75147 -11.32629 -11.25780 -11.21696 -11.12037 -10.88432 -10.76962 -10.63955 -10.40852 -10.30522 -9.74315 -9.22450 -9.14519 -8.99729 -8.43922 -8.23565 -7.24602 -6.02777 -4.04378 0.70124 0.74479 1.53180 1.99202 3.08156 3.33333 3.37395 3.40138 4.07456 4.31740 4.42071 4.62643 4.68010 4.79674 4.88969 4.93414 5.13816 5.24655 5.32718 5.36232 5.44072 5.51383 5.68747 5.72017 5.75655 5.81093 5.86050 6.02682 6.06737 6.16526 6.23391 6.40334 6.56384 6.67465 7.10449 7.11662 7.32743 7.36205 7.79139 8.08242 8.19576 8.54403 9.02769 9.59866 11.08075 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.002893 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.871250 B = 9675.220478 C =10625.322453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.897 3.103 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.194 3.806 10 N -0.539 5.539 11 C 0.056 3.944 12 C 0.062 3.938 13 N -0.534 5.534 14 C 0.092 3.908 15 C -0.045 4.045 16 C -0.085 4.085 17 C -0.024 4.024 18 Cl -0.061 7.061 19 C -0.107 4.107 20 C -0.023 4.023 21 Cl -0.059 7.059 22 C -0.099 4.099 23 C 0.054 3.946 24 C 0.069 3.931 25 H 0.262 0.738 26 H -0.009 1.009 27 H 0.030 0.970 28 H 0.031 0.969 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.049 0.951 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.142 0.858 36 H 0.139 0.861 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.028 0.972 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.046 -19.802 -7.367 24.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.069 3.931 10 N -0.264 5.264 11 C -0.073 4.073 12 C -0.066 4.066 13 N -0.259 5.259 14 C -0.036 4.036 15 C -0.046 4.046 16 C -0.104 4.104 17 C -0.051 4.051 18 Cl -0.032 7.032 19 C -0.126 4.126 20 C -0.050 4.050 21 Cl -0.030 7.030 22 C -0.118 4.118 23 C -0.074 4.074 24 C -0.060 4.060 25 H 0.071 0.929 26 H 0.009 0.991 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.091 0.909 30 H 0.090 0.910 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.105 0.895 34 H 0.159 0.841 35 H 0.160 0.840 36 H 0.157 0.843 37 H 0.058 0.942 38 H 0.090 0.910 39 H 0.047 0.953 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 11.927 -19.678 -7.488 24.198 hybrid contribution 0.411 0.982 -0.244 1.092 sum 12.338 -18.696 -7.731 23.697 Atomic orbital electron populations 1.69948 1.06066 1.26888 1.50895 1.24985 0.94856 0.99289 0.95429 0.86570 0.79459 0.82796 0.78646 1.20253 1.21350 1.20181 1.21111 0.93396 0.89978 1.50225 0.91997 1.19691 0.90022 0.87256 0.96105 1.62294 1.28163 1.02757 1.33182 1.22063 0.94707 0.89952 1.00568 1.22179 0.96082 0.98783 0.89521 1.62210 1.25202 1.03091 1.35397 1.21041 0.95015 0.96165 0.91366 1.19682 0.93527 0.94966 0.96444 1.21034 0.99832 0.98610 0.90936 1.20711 0.95470 0.97241 0.91661 1.98387 1.80392 1.65216 1.59215 1.20854 0.94843 0.96722 1.00224 1.20680 0.91256 0.98059 0.94997 1.98393 1.35763 1.75793 1.93093 1.21133 0.96027 0.99521 0.95126 1.22356 0.96341 0.88473 1.00216 1.21969 0.95414 0.97336 0.91304 0.92859 0.99073 0.95231 0.95086 0.90907 0.91021 0.94083 0.93331 0.89474 0.84132 0.84039 0.84313 0.94194 0.91029 0.95332 0.89551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -14.22 8.47 -34.44 -0.29 -14.51 16 8 H 0.06 1.70 7.13 -52.49 -0.37 1.33 16 9 C 0.19 5.06 4.72 -4.98 -0.02 5.03 16 10 N -0.54 -11.51 4.70 -235.91 -1.11 -12.62 16 11 C 0.06 0.99 5.61 -3.76 -0.02 0.97 16 12 C 0.06 0.86 5.61 -3.76 -0.02 0.84 16 13 N -0.53 -7.24 4.70 -235.91 -1.11 -8.35 16 14 C 0.09 0.94 5.12 -4.97 -0.03 0.92 16 15 C -0.05 -0.46 4.89 -104.63 -0.51 -0.97 16 16 C -0.08 -0.83 9.48 -39.54 -0.38 -1.21 16 17 C -0.02 -0.23 6.32 -39.50 -0.25 -0.48 16 18 Cl -0.06 -0.56 28.96 -51.86 -1.50 -2.06 16 19 C -0.11 -1.02 9.62 -39.51 -0.38 -1.40 16 20 C -0.02 -0.23 6.32 -39.50 -0.25 -0.48 16 21 Cl -0.06 -0.57 28.96 -51.86 -1.50 -2.08 16 22 C -0.10 -1.00 7.70 -39.54 -0.30 -1.30 16 23 C 0.05 0.82 5.25 -3.77 -0.02 0.80 16 24 C 0.07 1.33 5.43 -3.77 -0.02 1.31 16 25 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 26 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 27 H 0.03 0.82 8.03 -51.93 -0.42 0.40 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 1.26 8.07 -51.93 -0.42 0.84 16 30 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.47 8.06 -51.93 -0.42 0.06 16 33 H 0.09 0.76 7.97 -51.93 -0.41 0.34 16 34 H 0.14 1.23 8.06 -52.48 -0.42 0.81 16 35 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.14 1.31 7.99 -52.49 -0.42 0.89 16 37 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 1.01 5.95 -51.93 -0.31 0.70 16 39 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 40 H 0.09 1.81 6.79 -51.93 -0.35 1.46 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -29.52 354.62 -12.39 -41.91 By element: Atomic # 1 Polarization: 1.89 SS G_CDS: -5.64 Total: -3.75 kcal Atomic # 6 Polarization: -6.39 SS G_CDS: -2.59 Total: -8.98 kcal Atomic # 7 Polarization: -45.47 SS G_CDS: -1.48 Total: -46.96 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -3.00 Total: -4.14 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.52 -12.39 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589257481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.696 kcal (2) G-P(sol) polarization free energy of solvation -29.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds