Wall clock time and date at job start Tue Mar 31 2020 14:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00247 * 2 1 4 4 H 1.48493 * 109.47081 * 239.99807 * 3 2 1 5 5 H 1.48506 * 109.46794 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47358 * 119.99753 * 3 2 1 7 7 C 1.37879 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00185 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99733 * 0.02562 * 7 2 1 10 10 N 1.46896 * 109.46929 * 179.97438 * 9 7 2 11 11 C 1.46959 * 110.99832 * 169.99936 * 10 9 7 12 12 C 1.53058 * 109.36419 * 183.18928 * 11 10 9 13 13 N 1.46955 * 109.36051 * 301.59955 * 12 11 10 14 14 C 1.46906 * 110.99744 * 183.18754 * 13 12 11 15 15 C 1.50703 * 109.47109 * 169.99905 * 14 13 12 16 16 C 1.38227 * 119.98647 * 269.72779 * 15 14 13 17 17 C 1.38363 * 120.00912 * 179.72731 * 16 15 14 18 18 Cl 1.73601 * 120.00353 * 180.27195 * 17 16 15 19 19 C 1.38328 * 119.98804 * 0.56444 * 17 16 15 20 20 C 1.38332 * 119.97179 * 359.71179 * 19 17 16 21 21 Cl 1.73600 * 120.00338 * 180.02562 * 20 19 17 22 22 C 1.38219 * 119.98670 * 90.00223 * 15 14 13 23 23 C 1.46959 * 110.88319 * 59.32174 * 13 12 11 24 24 C 1.46959 * 111.00113 * 293.79952 * 10 9 7 25 25 H 0.97003 * 119.99617 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.46768 * 59.99733 * 9 7 2 27 27 H 1.09004 * 109.47174 * 299.99655 * 9 7 2 28 28 H 1.08995 * 109.48972 * 63.22103 * 11 10 9 29 29 H 1.08998 * 109.48999 * 303.15503 * 11 10 9 30 30 H 1.08994 * 109.48935 * 181.63483 * 12 11 10 31 31 H 1.08999 * 109.48934 * 61.56553 * 12 11 10 32 32 H 1.08992 * 109.47459 * 289.99824 * 14 13 12 33 33 H 1.09004 * 109.47040 * 49.99975 * 14 13 12 34 34 H 1.08003 * 119.99271 * 0.02562 * 16 15 14 35 35 H 1.07994 * 120.01167 * 179.72551 * 19 17 16 36 36 H 1.08001 * 119.99152 * 359.97438 * 22 15 14 37 37 H 1.08995 * 109.48972 * 60.64434 * 23 13 12 38 38 H 1.08998 * 109.48999 * 180.71033 * 23 13 12 39 39 H 1.08999 * 109.48803 * 296.77931 * 24 10 9 40 40 H 1.08994 * 109.48671 * 56.84618 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6157 0.0005 11 6 1.5208 -4.8940 0.2388 12 6 2.5563 -6.0188 0.3105 13 7 3.3193 -6.0593 -0.9448 14 6 4.2739 -7.1759 -0.9448 15 6 4.8579 -7.3375 -2.3247 16 6 4.2451 -8.1715 -3.2409 17 6 4.7777 -8.3158 -4.5097 18 17 4.0039 -9.3578 -5.6626 19 6 5.9302 -7.6344 -4.8574 20 6 6.5462 -6.8044 -3.9381 21 17 7.9923 -5.9483 -4.3738 22 6 6.0094 -6.6561 -2.6716 23 6 4.0041 -4.7810 -1.1831 24 6 2.9686 -3.6563 -1.2548 25 1 -0.4850 0.8401 0.0004 26 1 0.6246 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 0.8252 -5.0915 -0.5768 29 1 0.9732 -4.8433 1.1799 30 1 2.0484 -6.9718 0.4582 31 1 3.2354 -5.8354 1.1431 32 1 5.0738 -6.9701 -0.2336 33 1 3.7599 -8.0934 -0.6581 34 1 3.3476 -8.7068 -2.9679 35 1 6.3487 -7.7503 -5.8462 36 1 6.4900 -6.0077 -1.9540 37 1 4.6996 -4.5835 -0.3675 38 1 4.5516 -4.8316 -2.1242 39 1 2.2895 -3.8397 -2.0874 40 1 3.4765 -2.7033 -1.4025 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589257481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:48 Heat of formation + Delta-G solvation = 3.262124 kcal Electronic energy + Delta-G solvation = -22962.799347 eV Core-core repulsion = 19442.123731 eV Total energy + Delta-G solvation = -3520.675616 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.94718 -39.79462 -37.75613 -37.50506 -36.55147 -34.64695 -32.75116 -31.93803 -31.52936 -29.89465 -27.61345 -25.43491 -24.60581 -23.71483 -23.28919 -22.27233 -20.61295 -18.48955 -18.20259 -17.32395 -17.06239 -16.77641 -16.46446 -15.85344 -15.79187 -15.54440 -15.39205 -15.14239 -15.07762 -14.62878 -14.16689 -13.84962 -13.47563 -13.35083 -13.18957 -12.99837 -12.92089 -12.73204 -12.63279 -12.35409 -12.26526 -12.13998 -12.07106 -11.99128 -11.94973 -11.80042 -11.45268 -11.18281 -10.61604 -9.93446 -9.74441 -9.31310 -9.02476 -8.20901 -6.31400 -0.04542 -0.00349 0.79765 1.25543 1.40856 1.44053 1.51930 2.30481 2.39972 3.07374 3.11409 3.31174 3.52333 3.90986 3.95812 3.99658 4.05324 4.16015 4.22286 4.28587 4.40696 4.45948 4.54718 4.63288 4.69028 4.75377 4.88307 4.97192 4.99081 5.03115 5.04883 5.07198 5.22638 5.28156 5.33138 5.49758 5.63334 5.99501 6.05208 6.08252 6.34143 6.63258 6.84391 7.38444 8.90180 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013492 B = 0.002893 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.871250 B = 9675.220478 C =10625.322453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.969 3.031 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.525 4.525 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.543 5.543 11 C 0.052 3.948 12 C 0.073 3.927 13 N -0.543 5.543 14 C 0.096 3.904 15 C -0.052 4.052 16 C -0.086 4.086 17 C -0.031 4.031 18 Cl -0.058 7.058 19 C -0.108 4.108 20 C -0.031 4.031 21 Cl -0.060 7.060 22 C -0.103 4.103 23 C 0.070 3.930 24 C 0.070 3.930 25 H 0.265 0.735 26 H -0.043 1.043 27 H 0.004 0.996 28 H 0.019 0.981 29 H 0.072 0.928 30 H 0.106 0.894 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.144 0.856 37 H 0.042 0.958 38 H 0.085 0.915 39 H 0.010 0.990 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.672 -20.884 -7.275 26.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.793 3.207 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.563 4.563 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.268 5.268 11 C -0.077 4.077 12 C -0.055 4.055 13 N -0.268 5.268 14 C -0.031 4.031 15 C -0.053 4.053 16 C -0.105 4.105 17 C -0.058 4.058 18 Cl -0.029 7.029 19 C -0.127 4.127 20 C -0.058 4.058 21 Cl -0.031 7.031 22 C -0.122 4.122 23 C -0.058 4.058 24 C -0.058 4.058 25 H 0.073 0.927 26 H -0.025 1.025 27 H 0.023 0.977 28 H 0.037 0.963 29 H 0.091 0.909 30 H 0.124 0.876 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.169 0.831 35 H 0.170 0.830 36 H 0.162 0.838 37 H 0.061 0.939 38 H 0.103 0.897 39 H 0.029 0.971 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 13.573 -20.793 -7.398 25.910 hybrid contribution -0.125 1.242 -0.316 1.288 sum 13.448 -19.551 -7.713 24.952 Atomic orbital electron populations 1.70083 1.07782 1.27989 1.51691 1.25926 0.95738 1.03237 0.94751 0.85442 0.78182 0.77876 0.79177 1.19231 1.20844 1.19166 1.21427 0.93592 0.91061 1.50195 0.91872 1.19334 0.90081 0.89062 0.93217 1.62231 1.27246 1.03170 1.34178 1.22197 0.95888 0.89572 1.00005 1.22100 0.95245 0.98368 0.89784 1.62146 1.26261 1.03118 1.35297 1.21109 0.94831 0.95469 0.91698 1.19695 0.93684 0.95334 0.96561 1.21199 1.00047 0.98444 0.90838 1.20798 0.95647 0.97464 0.91899 1.98389 1.80323 1.65094 1.59103 1.21018 0.94719 0.96297 1.00684 1.20756 0.91443 0.98357 0.95212 1.98393 1.35766 1.75811 1.93098 1.21256 0.96156 0.99551 0.95277 1.22121 0.94703 0.87915 1.01098 1.21940 0.95696 0.98432 0.89767 0.92663 1.02513 0.97743 0.96252 0.90942 0.87629 0.93752 0.92195 0.87148 0.83083 0.82987 0.83794 0.93936 0.89689 0.97134 0.91684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.94 13.29 21.45 0.28 -56.65 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.97 44.47 29.54 68.60 2.03 46.50 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 7 C -0.52 -30.05 8.47 25.60 0.22 -29.83 16 8 H 0.06 3.53 7.13 -2.91 -0.02 3.50 16 9 C 0.21 11.40 4.72 85.56 0.40 11.81 16 10 N -0.54 -23.71 4.70 -900.28 -4.23 -27.94 16 11 C 0.05 1.83 5.61 86.31 0.48 2.32 16 12 C 0.07 1.84 5.61 86.31 0.48 2.33 16 13 N -0.54 -13.42 4.70 -900.28 -4.23 -17.66 16 14 C 0.10 1.64 5.12 85.56 0.44 2.07 16 15 C -0.05 -0.91 4.89 -19.87 -0.10 -1.01 16 16 C -0.09 -1.49 9.48 22.30 0.21 -1.28 16 17 C -0.03 -0.55 6.32 22.32 0.14 -0.41 16 18 Cl -0.06 -0.98 28.96 -2.72 -0.08 -1.06 16 19 C -0.11 -1.88 9.62 22.31 0.21 -1.66 16 20 C -0.03 -0.56 6.32 22.32 0.14 -0.42 16 21 Cl -0.06 -1.07 28.96 -2.72 -0.08 -1.15 16 22 C -0.10 -1.86 7.70 22.29 0.17 -1.69 16 23 C 0.07 2.02 5.25 86.31 0.45 2.48 16 24 C 0.07 2.78 5.43 86.31 0.47 3.25 16 25 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 26 H -0.04 -2.57 8.12 -2.39 -0.02 -2.59 16 27 H 0.00 0.26 8.03 -2.38 -0.02 0.24 16 28 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.07 2.52 8.07 -2.39 -0.02 2.50 16 30 H 0.11 2.03 8.07 -2.39 -0.02 2.01 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 0.94 8.06 -2.39 -0.02 0.92 16 33 H 0.11 1.43 7.97 -2.38 -0.02 1.41 16 34 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 35 H 0.15 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.14 2.41 7.99 -2.91 -0.02 2.38 16 37 H 0.04 1.22 8.14 -2.39 -0.02 1.21 16 38 H 0.08 2.25 5.95 -2.39 -0.01 2.24 16 39 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 40 H 0.06 2.80 6.79 -2.39 -0.02 2.78 16 Total: -1.00 -64.89 354.62 -1.08 -65.97 By element: Atomic # 1 Polarization: 2.47 SS G_CDS: 1.04 Total: 3.51 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 4.19 Total: -11.51 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -8.18 Total: -102.25 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 17 Polarization: -2.05 SS G_CDS: -0.16 Total: -2.21 kcal Total: -64.89 -1.08 -65.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589257481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.229 kcal (2) G-P(sol) polarization free energy of solvation -64.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds