Wall clock time and date at job start Tue Mar 31 2020 15:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99961 * 2 1 4 4 H 1.48492 * 109.47528 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46858 * 300.00660 * 3 2 1 6 6 H 1.48502 * 109.47098 * 59.99958 * 3 2 1 7 7 C 1.37876 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99743 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46788 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00117 * 263.35942 * 10 9 7 12 12 C 1.52997 * 109.47228 * 265.95384 * 11 10 9 13 13 F 1.39902 * 109.47121 * 60.00278 * 12 11 10 14 14 F 1.39902 * 109.47058 * 180.02562 * 12 11 10 15 15 F 1.39901 * 109.46904 * 300.00070 * 12 11 10 16 16 C 1.34770 * 119.99595 * 83.36634 * 10 9 7 17 17 O 1.21553 * 119.99867 * 183.80510 * 16 10 9 18 18 C 1.47886 * 120.00389 * 3.80127 * 16 10 9 19 19 C 1.39894 * 125.69537 * 173.67187 * 18 16 10 20 20 C 1.38586 * 107.59449 * 180.02562 * 19 18 16 21 21 N 1.34108 * 132.33903 * 179.97438 * 20 19 18 22 22 C 1.31136 * 120.83967 * 179.68335 * 21 20 19 23 23 C 1.40339 * 120.29206 * 0.63056 * 22 21 20 24 24 C 1.35457 * 119.47009 * 359.39774 * 23 22 21 25 25 N 1.36675 * 119.13593 * 0.28018 * 24 23 22 26 26 N 1.32370 * 125.68827 * 353.71061 * 18 16 10 27 27 H 0.96995 * 120.00297 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46741 * 60.00783 * 9 7 2 29 29 H 1.08996 * 109.47241 * 300.00218 * 9 7 2 30 30 H 1.09004 * 109.46999 * 25.95506 * 11 10 9 31 31 H 1.08998 * 109.46885 * 145.95361 * 11 10 9 32 32 H 1.08002 * 126.20370 * 0.02562 * 19 18 16 33 33 H 1.08001 * 119.85552 * 180.32351 * 22 21 20 34 34 H 1.08008 * 120.26701 * 179.67534 * 23 22 21 35 35 H 1.07994 * 120.43381 * 180.29940 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 2.5678 -4.2647 -1.2607 12 6 1.6703 -5.4837 -1.4825 13 9 0.3336 -5.0746 -1.5389 14 9 2.0189 -6.1068 -2.6857 15 9 1.8381 -6.3848 -0.4256 16 6 2.7436 -4.0371 1.1588 17 8 3.5852 -4.9142 1.1520 18 6 2.3129 -3.4357 2.4394 19 6 2.6979 -3.8660 3.7136 20 6 2.0777 -3.0419 4.6392 21 7 2.1000 -3.0118 5.9798 22 6 1.4174 -2.1100 6.6435 23 6 0.6383 -1.1655 5.9575 24 6 0.6066 -1.1849 4.6035 25 7 1.3319 -2.1306 3.9343 26 7 1.4981 -2.4008 2.5711 27 1 -0.4850 0.8400 0.0004 28 1 0.6243 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.4371 -3.5626 -2.0842 31 1 3.6093 -4.5834 -1.2169 32 1 3.3586 -4.6910 3.9358 33 1 1.4509 -2.0972 7.7229 34 1 0.0721 -0.4262 6.5047 35 1 0.0162 -0.4624 4.0597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589832757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:27 Heat of formation + Delta-G solvation = -49.853472 kcal Electronic energy + Delta-G solvation = -28548.607305 eV Core-core repulsion = 23941.955025 eV Total energy + Delta-G solvation = -4606.652280 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.69159 -47.24892 -47.13131 -41.99725 -39.39258 -37.47783 -35.43971 -33.79077 -32.73527 -31.20932 -29.43338 -28.80020 -27.07580 -25.09077 -23.83186 -23.15290 -22.89011 -21.56766 -19.15584 -18.23953 -18.12238 -17.78396 -17.58400 -17.11492 -16.40720 -16.25208 -15.74684 -15.43380 -15.11947 -14.41942 -14.30387 -14.19436 -14.05580 -14.01494 -13.62355 -13.40374 -13.32657 -13.31980 -12.98377 -12.82645 -12.48508 -12.32638 -12.10046 -11.90733 -11.59040 -11.05054 -11.02816 -10.99652 -10.49070 -10.28311 -9.92417 -9.71521 -9.49702 -9.25329 -8.55069 -8.17601 -7.65824 -6.18952 -4.22048 0.67262 1.02382 2.17364 2.27577 3.04443 3.15836 3.25155 3.28549 3.35513 3.54687 3.79975 4.02169 4.22643 4.30137 4.35497 4.42557 4.55540 4.67080 4.94781 5.09295 5.16766 5.35888 5.47673 5.58084 5.64913 5.70921 5.93471 6.17215 6.34103 6.52824 6.63528 7.20209 7.36296 7.62262 7.70670 7.76135 7.91855 8.01796 8.51050 8.80105 9.41224 10.89062 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.010034 B = 0.005835 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.791301 B = 4797.313638 C = 6808.004231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.072 3.928 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.519 4.519 8 H 0.058 0.942 9 C 0.227 3.773 10 N -0.583 5.583 11 C 0.082 3.918 12 C 0.431 3.569 13 F -0.180 7.180 14 F -0.188 7.188 15 F -0.178 7.178 16 C 0.603 3.397 17 O -0.536 6.536 18 C 0.068 3.932 19 C -0.205 4.205 20 C 0.232 3.768 21 N -0.463 5.463 22 C 0.172 3.828 23 C -0.240 4.240 24 C 0.178 3.822 25 N -0.315 5.315 26 N -0.185 5.185 27 H 0.262 0.738 28 H 0.043 0.957 29 H 0.073 0.927 30 H 0.129 0.871 31 H 0.119 0.881 32 H 0.166 0.834 33 H 0.175 0.825 34 H 0.163 0.837 35 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.336 -3.087 7.045 7.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.076 0.924 9 C 0.108 3.892 10 N -0.313 5.313 11 C -0.045 4.045 12 C 0.375 3.625 13 F -0.161 7.161 14 F -0.170 7.170 15 F -0.160 7.160 16 C 0.388 3.612 17 O -0.412 6.412 18 C -0.093 4.093 19 C -0.236 4.236 20 C 0.007 3.993 21 N -0.174 5.174 22 C -0.015 4.015 23 C -0.265 4.265 24 C 0.044 3.956 25 N -0.088 5.088 26 N -0.012 5.012 27 H 0.072 0.928 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.147 0.853 31 H 0.137 0.863 32 H 0.184 0.816 33 H 0.192 0.808 34 H 0.180 0.820 35 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -0.157 -3.372 6.518 7.340 hybrid contribution 0.094 1.107 -0.004 1.111 sum -0.062 -2.265 6.514 6.897 Atomic orbital electron populations 1.69940 1.05764 1.26735 1.50073 1.24771 0.94708 0.98649 0.94904 0.86586 0.80273 0.83785 0.77651 1.19842 1.20856 1.21087 1.21300 0.93160 0.90114 1.51218 0.92411 1.20090 0.87346 0.81596 1.00203 1.48107 1.45291 1.34490 1.03405 1.22488 0.99183 0.91913 0.90889 1.21502 0.80918 0.86440 0.73658 1.93200 1.36677 1.90228 1.96027 1.93147 1.91996 1.84684 1.47147 1.93211 1.95290 1.70289 1.57162 1.16976 0.81016 0.81131 0.82031 1.90751 1.32334 1.31432 1.86639 1.21914 0.97677 0.95105 0.94643 1.20813 1.09474 1.05479 0.87869 1.20480 0.96960 0.93320 0.88526 1.68155 1.21500 1.23795 1.03975 1.23281 0.89111 0.88204 1.00863 1.21732 1.06881 1.05091 0.92770 1.22156 0.91240 0.89897 0.92324 1.47750 1.31140 1.21762 1.08170 1.79427 1.19885 1.16147 0.85787 0.92840 0.93918 0.90991 0.85317 0.86259 0.81632 0.80812 0.81972 0.80238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.36 13.29 55.43 0.74 -22.62 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.75 16 3 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.52 -13.08 8.35 -34.44 -0.29 -13.36 16 8 H 0.06 1.51 7.81 -52.49 -0.41 1.10 16 9 C 0.23 5.29 4.59 -5.19 -0.02 5.26 16 10 N -0.58 -12.09 2.40 -176.16 -0.42 -12.52 16 11 C 0.08 1.40 5.42 -4.04 -0.02 1.38 16 12 C 0.43 7.31 3.29 37.16 0.12 7.43 16 13 F -0.18 -3.28 16.86 2.25 0.04 -3.24 16 14 F -0.19 -2.89 17.32 2.25 0.04 -2.86 16 15 F -0.18 -3.32 15.94 2.25 0.04 -3.28 16 16 C 0.60 12.96 7.10 -12.31 -0.09 12.87 16 17 O -0.54 -11.77 15.72 5.32 0.08 -11.68 16 18 C 0.07 1.44 6.75 -83.07 -0.56 0.88 16 19 C -0.21 -3.92 10.66 -38.83 -0.41 -4.34 16 20 C 0.23 4.16 7.90 -155.43 -1.23 2.93 16 21 N -0.46 -7.03 10.48 -12.22 -0.13 -7.16 16 22 C 0.17 1.84 11.27 -17.06 -0.19 1.65 16 23 C -0.24 -2.40 10.05 -39.78 -0.40 -2.80 16 24 C 0.18 2.49 11.30 -16.39 -0.19 2.30 16 25 N -0.32 -5.79 3.90 -12.20 -0.05 -5.83 16 26 N -0.19 -4.01 8.39 33.23 0.28 -3.73 16 27 H 0.26 6.57 8.31 -40.82 -0.34 6.24 16 28 H 0.04 1.04 7.80 -51.93 -0.41 0.63 16 29 H 0.07 1.81 5.35 -51.93 -0.28 1.53 16 30 H 0.13 1.97 8.04 -51.93 -0.42 1.55 16 31 H 0.12 1.88 7.49 -51.93 -0.39 1.49 16 32 H 0.17 2.90 8.06 -52.49 -0.42 2.48 16 33 H 0.17 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.16 0.94 8.06 -52.48 -0.42 0.51 16 35 H 0.18 2.27 8.06 -52.49 -0.42 1.85 16 LS Contribution 324.32 15.07 4.89 4.89 Total: -1.00 -31.16 324.32 -5.62 -36.78 By element: Atomic # 1 Polarization: 2.90 SS G_CDS: -2.73 Total: 0.17 kcal Atomic # 6 Polarization: 19.32 SS G_CDS: -3.38 Total: 15.95 kcal Atomic # 7 Polarization: -52.28 SS G_CDS: 0.42 Total: -51.86 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.08 Total: -11.68 kcal Atomic # 9 Polarization: -9.49 SS G_CDS: 0.11 Total: -9.38 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.16 -5.62 -36.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589832757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.077 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds