Wall clock time and date at job start Tue Mar 31 2020 15:06:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86805 * 119.99961 * 2 1 4 4 H 1.48492 * 109.47528 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46858 * 300.00660 * 3 2 1 6 6 H 1.48502 * 109.47098 * 59.99958 * 3 2 1 7 7 C 1.37876 * 120.00492 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00063 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99743 * 359.97438 * 7 2 1 10 10 N 1.46507 * 109.46788 * 180.02562 * 9 7 2 11 11 C 1.46501 * 120.00117 * 263.35942 * 10 9 7 12 12 C 1.52997 * 109.47228 * 265.95384 * 11 10 9 13 13 F 1.39902 * 109.47121 * 60.00278 * 12 11 10 14 14 F 1.39902 * 109.47058 * 180.02562 * 12 11 10 15 15 F 1.39901 * 109.46904 * 300.00070 * 12 11 10 16 16 C 1.34770 * 119.99595 * 83.36634 * 10 9 7 17 17 O 1.21553 * 119.99867 * 183.80510 * 16 10 9 18 18 C 1.47886 * 120.00389 * 3.80127 * 16 10 9 19 19 C 1.39894 * 125.69537 * 173.67187 * 18 16 10 20 20 C 1.38586 * 107.59449 * 180.02562 * 19 18 16 21 21 N 1.34108 * 132.33903 * 179.97438 * 20 19 18 22 22 C 1.31136 * 120.83967 * 179.68335 * 21 20 19 23 23 C 1.40339 * 120.29206 * 0.63056 * 22 21 20 24 24 C 1.35457 * 119.47009 * 359.39774 * 23 22 21 25 25 N 1.36675 * 119.13593 * 0.28018 * 24 23 22 26 26 N 1.32370 * 125.68827 * 353.71061 * 18 16 10 27 27 H 0.96995 * 120.00297 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46741 * 60.00783 * 9 7 2 29 29 H 1.08996 * 109.47241 * 300.00218 * 9 7 2 30 30 H 1.09004 * 109.46999 * 25.95506 * 11 10 9 31 31 H 1.08998 * 109.46885 * 145.95361 * 11 10 9 32 32 H 1.08002 * 126.20370 * 0.02562 * 19 18 16 33 33 H 1.08001 * 119.85552 * 180.32351 * 22 21 20 34 34 H 1.08008 * 120.26701 * 179.67534 * 23 22 21 35 35 H 1.07994 * 120.43381 * 180.29940 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2033 -3.6126 -0.0005 11 6 2.5678 -4.2647 -1.2607 12 6 1.6703 -5.4837 -1.4825 13 9 0.3336 -5.0746 -1.5389 14 9 2.0189 -6.1068 -2.6857 15 9 1.8381 -6.3848 -0.4256 16 6 2.7436 -4.0371 1.1588 17 8 3.5852 -4.9142 1.1520 18 6 2.3129 -3.4357 2.4394 19 6 2.6979 -3.8660 3.7136 20 6 2.0777 -3.0419 4.6392 21 7 2.1000 -3.0118 5.9798 22 6 1.4174 -2.1100 6.6435 23 6 0.6383 -1.1655 5.9575 24 6 0.6066 -1.1849 4.6035 25 7 1.3319 -2.1306 3.9343 26 7 1.4981 -2.4008 2.5711 27 1 -0.4850 0.8400 0.0004 28 1 0.6243 -2.5567 -0.8903 29 1 0.6248 -2.5571 0.8896 30 1 2.4371 -3.5626 -2.0842 31 1 3.6093 -4.5834 -1.2169 32 1 3.3586 -4.6910 3.9358 33 1 1.4509 -2.0972 7.7229 34 1 0.0721 -0.4262 6.5047 35 1 0.0162 -0.4624 4.0597 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000589832757.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:06:26 Heat of formation + Delta-G solvation = -68.596736 kcal Electronic energy + Delta-G solvation = -28549.420074 eV Core-core repulsion = 23941.955025 eV Total energy + Delta-G solvation = -4607.465049 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.09879 -48.61621 -48.58786 -43.27265 -40.94997 -38.72105 -37.11379 -34.96775 -34.62377 -32.49804 -30.90261 -30.10520 -28.87424 -26.40120 -25.19988 -24.80821 -24.24463 -22.94414 -20.62388 -19.64132 -19.53468 -19.05461 -18.99884 -18.75736 -18.02729 -17.47378 -17.08211 -16.93879 -16.59982 -16.07802 -15.82029 -15.48759 -15.46725 -15.28780 -15.03116 -14.81765 -14.75949 -14.73847 -14.41160 -14.28639 -13.81699 -13.73741 -13.55876 -13.44001 -13.13607 -12.85346 -12.72513 -12.23839 -12.21977 -11.83116 -11.74432 -11.40496 -10.77881 -10.57631 -10.41357 -9.87787 -8.97637 -8.13488 -6.21725 -0.43523 -0.15173 0.73683 1.04200 1.35820 1.40712 1.49032 1.62527 1.86075 2.21384 2.42378 2.49336 2.82870 2.88972 2.99478 3.04642 3.19383 3.28779 3.63268 3.69113 4.07029 4.13240 4.29953 4.31463 4.43932 4.59551 4.65294 4.70259 5.14199 5.16928 5.35322 5.44070 5.66331 5.75467 6.09203 6.11894 6.30732 6.64860 6.80451 6.92570 7.43770 8.94611 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.010034 B = 0.005835 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.791301 B = 4797.313638 C = 6808.004231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.037 3.963 3 Si 0.942 3.058 4 H -0.280 1.280 5 H -0.277 1.277 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.043 0.957 9 C 0.244 3.756 10 N -0.586 5.586 11 C 0.077 3.923 12 C 0.438 3.562 13 F -0.188 7.188 14 F -0.175 7.175 15 F -0.188 7.188 16 C 0.599 3.401 17 O -0.549 6.549 18 C 0.044 3.956 19 C -0.233 4.233 20 C 0.237 3.763 21 N -0.490 5.490 22 C 0.189 3.811 23 C -0.193 4.193 24 C 0.132 3.868 25 N -0.319 5.319 26 N -0.232 5.232 27 H 0.265 0.735 28 H 0.030 0.970 29 H 0.058 0.942 30 H 0.146 0.854 31 H 0.134 0.866 32 H 0.168 0.832 33 H 0.233 0.767 34 H 0.220 0.780 35 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.662 -1.621 9.464 9.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.164 4.164 3 Si 0.769 3.231 4 H -0.205 1.205 5 H -0.203 1.203 6 H -0.204 1.204 7 C -0.559 4.559 8 H 0.062 0.938 9 C 0.124 3.876 10 N -0.316 5.316 11 C -0.048 4.048 12 C 0.382 3.618 13 F -0.170 7.170 14 F -0.156 7.156 15 F -0.170 7.170 16 C 0.385 3.615 17 O -0.426 6.426 18 C -0.115 4.115 19 C -0.265 4.265 20 C 0.011 3.989 21 N -0.202 5.202 22 C 0.005 3.995 23 C -0.216 4.216 24 C 0.000 4.000 25 N -0.093 5.093 26 N -0.060 5.060 27 H 0.074 0.926 28 H 0.048 0.952 29 H 0.075 0.925 30 H 0.164 0.836 31 H 0.152 0.848 32 H 0.186 0.814 33 H 0.249 0.751 34 H 0.236 0.764 35 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -0.499 -1.894 8.928 9.140 hybrid contribution 0.112 0.724 -0.460 0.865 sum -0.386 -1.170 8.468 8.557 Atomic orbital electron populations 1.70018 1.06710 1.27455 1.50815 1.25320 0.95332 1.01043 0.94684 0.85762 0.78689 0.80751 0.77886 1.20542 1.20309 1.20407 1.21337 0.92431 0.91182 1.50988 0.93841 1.19681 0.87287 0.81835 0.98772 1.48033 1.44875 1.34176 1.04534 1.22735 0.99910 0.92183 0.89988 1.21371 0.80444 0.86223 0.73772 1.93185 1.37370 1.90322 1.96076 1.93170 1.91825 1.84421 1.46224 1.93193 1.95307 1.70631 1.57838 1.17172 0.80804 0.80975 0.82513 1.90712 1.32905 1.32018 1.86971 1.21906 0.98741 0.95894 0.94989 1.20873 1.11102 1.06763 0.87797 1.20621 0.96042 0.92584 0.89690 1.68312 1.23651 1.26030 1.02210 1.24425 0.86012 0.85776 1.03259 1.22474 1.04068 1.04152 0.90917 1.22804 0.92694 0.90451 0.94082 1.47862 1.31517 1.22553 1.07338 1.79216 1.21431 1.17277 0.88117 0.92621 0.95247 0.92487 0.83588 0.84838 0.81404 0.75111 0.76357 0.79760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.47 13.29 21.45 0.28 -48.18 16 2 C 0.04 1.89 5.46 84.65 0.46 2.35 16 3 Si 0.94 41.40 29.54 68.60 2.03 43.43 16 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 6 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.52 -26.88 8.35 25.60 0.21 -26.67 16 8 H 0.04 2.33 7.81 -2.91 -0.02 2.30 16 9 C 0.24 11.84 4.59 85.63 0.39 12.23 16 10 N -0.59 -25.23 2.40 -829.52 -1.99 -27.22 16 11 C 0.08 2.67 5.42 86.38 0.47 3.14 16 12 C 0.44 14.99 3.29 71.98 0.24 15.23 16 13 F -0.19 -6.98 16.86 44.97 0.76 -6.22 16 14 F -0.17 -5.28 17.32 44.97 0.78 -4.50 16 15 F -0.19 -7.14 15.94 44.97 0.72 -6.43 16 16 C 0.60 26.92 7.10 86.80 0.62 27.54 16 17 O -0.55 -25.02 15.72 -3.88 -0.06 -25.08 16 18 C 0.04 1.96 6.75 42.02 0.28 2.25 16 19 C -0.23 -9.32 10.66 22.75 0.24 -9.08 16 20 C 0.24 8.49 7.90 133.00 1.05 9.54 16 21 N -0.49 -13.69 10.48 -192.59 -2.02 -15.71 16 22 C 0.19 3.09 11.27 85.31 0.96 4.05 16 23 C -0.19 -2.88 10.05 22.14 0.22 -2.66 16 24 C 0.13 3.44 11.30 83.30 0.94 4.38 16 25 N -0.32 -11.77 3.90 -192.51 -0.75 -12.52 16 26 N -0.23 -10.45 8.39 -48.79 -0.41 -10.86 16 27 H 0.26 13.31 8.31 -92.71 -0.77 12.54 16 28 H 0.03 1.48 7.80 -2.39 -0.02 1.47 16 29 H 0.06 3.01 5.35 -2.39 -0.01 3.00 16 30 H 0.15 4.48 8.04 -2.38 -0.02 4.46 16 31 H 0.13 4.23 7.49 -2.39 -0.02 4.21 16 32 H 0.17 6.26 8.06 -2.91 -0.02 6.23 16 33 H 0.23 1.11 8.06 -2.91 -0.02 1.08 16 34 H 0.22 0.85 8.06 -2.91 -0.02 0.82 16 35 H 0.19 4.48 8.06 -2.91 -0.02 4.45 16 Total: -1.00 -71.16 324.32 6.59 -64.57 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.17 Total: 6.43 kcal Atomic # 6 Polarization: 36.21 SS G_CDS: 6.09 Total: 42.30 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -4.88 Total: -114.50 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.06 Total: -25.08 kcal Atomic # 9 Polarization: -19.41 SS G_CDS: 2.25 Total: -17.15 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -71.16 6.59 -64.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589832757.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.029 kcal (2) G-P(sol) polarization free energy of solvation -71.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds