Wall clock time and date at job start Tue Mar 31 2020 14:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00173 * 2 1 4 4 H 1.48492 * 109.47099 * 270.00383 * 3 2 1 5 5 H 1.48494 * 109.46638 * 30.00468 * 3 2 1 6 6 H 1.48498 * 109.46912 * 150.00203 * 3 2 1 7 7 C 1.37880 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00199 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47385 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.47428 * 180.02562 * 10 9 7 12 12 C 1.46963 * 110.99746 * 293.80155 * 11 10 9 13 13 C 1.53055 * 109.36395 * 176.81271 * 12 11 10 14 14 N 1.46956 * 109.36416 * 58.39725 * 13 12 11 15 15 C 1.39750 * 110.99937 * 176.81216 * 14 13 12 16 16 C 1.38857 * 120.07001 * 63.79796 * 15 14 13 17 17 C 1.38232 * 119.92543 * 179.97438 * 16 15 14 18 18 Cl 1.73597 * 119.96503 * 180.02562 * 17 16 15 19 19 C 1.38407 * 120.06556 * 359.97438 * 17 16 15 20 20 C 1.38253 * 120.14483 * 0.02562 * 19 17 16 21 21 C 1.38217 * 120.07494 * 359.72145 * 20 19 17 22 22 Cl 1.73599 * 120.03583 * 180.27619 * 21 20 19 23 23 C 1.46950 * 110.88187 * 300.68087 * 14 13 12 24 24 C 1.46956 * 111.00196 * 170.00276 * 11 10 9 25 25 H 0.97003 * 119.99536 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47067 * 59.99904 * 9 7 2 27 27 H 1.09004 * 109.47414 * 300.00290 * 9 7 2 28 28 H 1.09002 * 109.46684 * 59.99893 * 10 9 7 29 29 H 1.09004 * 109.46977 * 300.00429 * 10 9 7 30 30 H 1.09003 * 109.48613 * 296.77787 * 12 11 10 31 31 H 1.08994 * 109.49091 * 56.84241 * 12 11 10 32 32 H 1.08994 * 109.48838 * 298.43235 * 13 12 11 33 33 H 1.09003 * 109.50210 * 178.37531 * 13 12 11 34 34 H 1.07998 * 120.04213 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.92905 * 180.02562 * 19 17 16 36 36 H 1.08005 * 119.96147 * 180.02562 * 20 19 17 37 37 H 1.09003 * 109.48721 * 299.35316 * 23 14 13 38 38 H 1.09004 * 109.49418 * 179.28931 * 23 14 13 39 39 H 1.09000 * 109.48237 * 303.15282 * 24 11 10 40 40 H 1.08993 * 109.48945 * 63.19329 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.7675 -5.1138 1.2539 13 6 -0.0451 -6.4089 1.1817 14 7 0.8618 -7.5404 0.9434 15 6 0.1630 -8.7507 0.9428 16 6 -0.7992 -8.9981 -0.0272 17 6 -1.4882 -10.1965 -0.0253 18 17 -2.6910 -10.5071 -1.2379 19 6 -1.2194 -11.1493 0.9419 20 6 -0.2619 -10.9059 1.9091 21 6 0.4343 -9.7119 1.9096 22 17 1.6414 -9.4103 3.1202 23 6 1.6050 -7.3609 -0.3116 24 6 2.4176 -6.0659 -0.2393 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8719 -3.6044 0.8895 29 1 2.8719 -3.6044 -0.8905 30 1 1.4685 -5.1703 2.0867 31 1 0.0940 -4.2697 1.4017 32 1 -0.7647 -6.3416 0.3658 33 1 -0.5747 -6.5591 2.1224 34 1 -1.0091 -8.2551 -0.7824 35 1 -1.7587 -12.0850 0.9411 36 1 -0.0542 -11.6517 2.6622 37 1 0.9040 -7.3044 -1.1444 38 1 2.2785 -8.2050 -0.4594 39 1 2.9469 -5.9157 -1.1803 40 1 3.1375 -6.1329 0.5763 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593051808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:41 Heat of formation + Delta-G solvation = 22.909363 kcal Electronic energy + Delta-G solvation = -22993.128591 eV Core-core repulsion = 19473.304943 eV Total energy + Delta-G solvation = -3519.823648 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.52602 -38.53407 -36.99978 -36.40897 -35.52697 -33.04732 -31.04504 -30.89616 -30.67623 -29.02560 -26.15197 -23.90543 -23.48082 -23.11600 -22.09500 -20.34747 -19.47255 -17.98224 -16.70333 -16.28999 -16.27621 -15.36421 -15.18521 -14.74655 -14.58468 -14.40841 -14.25695 -13.98308 -13.81569 -13.37066 -12.75374 -12.62005 -12.53120 -12.33865 -12.18653 -11.88314 -11.38829 -11.34610 -11.18901 -11.09347 -11.01931 -10.97943 -10.86179 -10.60620 -10.48819 -9.85455 -9.37103 -9.33703 -9.12528 -8.82043 -8.67321 -8.33432 -7.75877 -6.00116 -4.02370 0.59024 0.72070 1.69154 2.01829 3.03699 3.32012 3.38258 3.41334 3.53418 4.32837 4.35615 4.52277 4.56474 4.76722 4.87795 5.02777 5.18911 5.25881 5.34474 5.37092 5.41601 5.48113 5.56622 5.68465 5.70918 5.74614 5.84533 6.02418 6.11736 6.17336 6.26277 6.36701 6.48127 6.80802 6.95666 7.05108 7.47044 7.53618 7.77902 7.88165 8.06927 8.42941 9.04764 9.61359 11.11215 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.002658 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.039059 B =10531.896981 C =11525.548598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.029 3.971 10 C 0.064 3.936 11 N -0.540 5.540 12 C 0.058 3.942 13 C 0.064 3.936 14 N -0.499 5.499 15 C 0.118 3.882 16 C -0.128 4.128 17 C -0.024 4.024 18 Cl -0.064 7.064 19 C -0.106 4.106 20 C -0.097 4.097 21 C -0.013 4.013 22 Cl -0.044 7.044 23 C 0.064 3.936 24 C 0.057 3.943 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.017 0.983 28 H 0.021 0.979 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.142 0.858 35 H 0.141 0.859 36 H 0.144 0.856 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.003 -25.618 2.543 25.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.561 4.561 8 H 0.072 0.928 9 C -0.009 4.009 10 C -0.062 4.062 11 N -0.265 5.265 12 C -0.070 4.070 13 C -0.062 4.062 14 N -0.221 5.221 15 C 0.022 3.978 16 C -0.148 4.148 17 C -0.051 4.051 18 Cl -0.035 7.035 19 C -0.125 4.125 20 C -0.116 4.116 21 C -0.041 4.041 22 Cl -0.015 7.015 23 C -0.062 4.062 24 C -0.072 4.072 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.035 0.965 28 H 0.040 0.960 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.162 0.838 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.097 0.903 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.125 -25.450 2.543 25.665 hybrid contribution 0.423 0.955 -0.029 1.045 sum -1.703 -24.495 2.514 24.682 Atomic orbital electron populations 1.69967 1.06014 1.26571 1.50672 1.24988 0.94827 0.99166 0.95306 0.86602 0.79827 0.83515 0.78105 1.20652 1.21232 1.19931 1.21189 0.92985 0.91061 1.50848 0.92810 1.19088 0.93957 0.90111 0.97708 1.22321 0.96734 0.88122 0.99070 1.62286 1.27681 1.02602 1.33941 1.22159 0.97636 0.96186 0.91016 1.22319 0.93745 0.88936 1.01195 1.59925 1.26473 0.99626 1.36048 1.18540 0.93630 0.92231 0.93351 1.21675 0.96274 0.96751 1.00148 1.20885 0.94733 0.95969 0.93521 1.98392 1.54898 1.95685 1.54545 1.21001 0.98434 0.99316 0.93731 1.20973 0.95482 0.95940 0.99249 1.21024 0.94943 0.94882 0.93246 1.98388 1.53895 1.96031 1.53149 1.22267 0.96891 0.98239 0.88805 1.22105 0.94178 0.89817 1.01087 0.93005 0.95789 0.96522 0.96043 0.92062 0.94341 0.88775 0.93260 0.90353 0.83976 0.84072 0.83793 0.93353 0.90528 0.90320 0.94353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.03 0.74 4.91 -27.88 -0.14 0.60 16 10 C 0.06 1.33 4.90 -3.83 -0.02 1.31 16 11 N -0.54 -9.53 4.71 -234.46 -1.10 -10.63 16 12 C 0.06 0.97 5.41 -3.76 -0.02 0.94 16 13 C 0.06 0.88 5.36 -3.77 -0.02 0.86 16 14 N -0.50 -6.30 4.08 -170.92 -0.70 -7.00 16 15 C 0.12 1.33 4.72 -83.74 -0.40 0.93 16 16 C -0.13 -1.34 8.42 -39.35 -0.33 -1.67 16 17 C -0.02 -0.22 6.32 -39.52 -0.25 -0.47 16 18 Cl -0.06 -0.58 28.95 -51.86 -1.50 -2.08 16 19 C -0.11 -0.83 9.82 -39.51 -0.39 -1.21 16 20 C -0.10 -0.78 9.82 -39.58 -0.39 -1.17 16 21 C -0.01 -0.13 6.34 -39.31 -0.25 -0.38 16 22 Cl -0.04 -0.48 28.44 -51.86 -1.47 -1.95 16 23 C 0.06 0.80 5.31 -3.77 -0.02 0.78 16 24 C 0.06 0.82 5.61 -3.77 -0.02 0.80 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.02 0.45 6.49 -51.93 -0.34 0.11 16 28 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.06 1.25 8.03 -51.93 -0.42 0.84 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 1.73 6.34 -51.93 -0.33 1.40 16 32 H 0.05 0.69 7.44 -51.93 -0.39 0.30 16 33 H 0.08 1.01 8.13 -51.93 -0.42 0.58 16 34 H 0.14 1.52 7.06 -52.49 -0.37 1.15 16 35 H 0.14 0.78 8.06 -52.48 -0.42 0.36 16 36 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.05 0.61 7.24 -51.93 -0.38 0.23 16 38 H 0.08 0.86 8.13 -51.93 -0.42 0.43 16 39 H 0.08 1.07 8.07 -51.93 -0.42 0.66 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 353.47 15.07 5.33 5.33 Total: -1.00 -29.59 353.47 -11.94 -41.53 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -5.56 Total: -3.69 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -2.65 Total: -12.10 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: -1.06 Total: -43.62 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -2.98 Total: -4.03 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.59 -11.94 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593051808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.438 kcal (2) G-P(sol) polarization free energy of solvation -29.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds