Wall clock time and date at job start Tue Mar 31 2020 14:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00173 * 2 1 4 4 H 1.48492 * 109.47099 * 270.00383 * 3 2 1 5 5 H 1.48494 * 109.46638 * 30.00468 * 3 2 1 6 6 H 1.48498 * 109.46912 * 150.00203 * 3 2 1 7 7 C 1.37880 * 120.00145 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00199 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47385 * 180.02562 * 9 7 2 11 11 N 1.46894 * 109.47428 * 180.02562 * 10 9 7 12 12 C 1.46963 * 110.99746 * 293.80155 * 11 10 9 13 13 C 1.53055 * 109.36395 * 176.81271 * 12 11 10 14 14 N 1.46956 * 109.36416 * 58.39725 * 13 12 11 15 15 C 1.39750 * 110.99937 * 176.81216 * 14 13 12 16 16 C 1.38857 * 120.07001 * 63.79796 * 15 14 13 17 17 C 1.38232 * 119.92543 * 179.97438 * 16 15 14 18 18 Cl 1.73597 * 119.96503 * 180.02562 * 17 16 15 19 19 C 1.38407 * 120.06556 * 359.97438 * 17 16 15 20 20 C 1.38253 * 120.14483 * 0.02562 * 19 17 16 21 21 C 1.38217 * 120.07494 * 359.72145 * 20 19 17 22 22 Cl 1.73599 * 120.03583 * 180.27619 * 21 20 19 23 23 C 1.46950 * 110.88187 * 300.68087 * 14 13 12 24 24 C 1.46956 * 111.00196 * 170.00276 * 11 10 9 25 25 H 0.97003 * 119.99536 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.47067 * 59.99904 * 9 7 2 27 27 H 1.09004 * 109.47414 * 300.00290 * 9 7 2 28 28 H 1.09002 * 109.46684 * 59.99893 * 10 9 7 29 29 H 1.09004 * 109.46977 * 300.00429 * 10 9 7 30 30 H 1.09003 * 109.48613 * 296.77787 * 12 11 10 31 31 H 1.08994 * 109.49091 * 56.84241 * 12 11 10 32 32 H 1.08994 * 109.48838 * 298.43235 * 13 12 11 33 33 H 1.09003 * 109.50210 * 178.37531 * 13 12 11 34 34 H 1.07998 * 120.04213 * 359.97438 * 16 15 14 35 35 H 1.08003 * 119.92905 * 180.02562 * 19 17 16 36 36 H 1.08005 * 119.96147 * 180.02562 * 20 19 17 37 37 H 1.09003 * 109.48721 * 299.35316 * 23 14 13 38 38 H 1.09004 * 109.49418 * 179.28931 * 23 14 13 39 39 H 1.09000 * 109.48237 * 303.15282 * 24 11 10 40 40 H 1.08993 * 109.48945 * 63.19329 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 7 1.5107 -4.9343 -0.0012 12 6 0.7675 -5.1138 1.2539 13 6 -0.0451 -6.4089 1.1817 14 7 0.8618 -7.5404 0.9434 15 6 0.1630 -8.7507 0.9428 16 6 -0.7992 -8.9981 -0.0272 17 6 -1.4882 -10.1965 -0.0253 18 17 -2.6910 -10.5071 -1.2379 19 6 -1.2194 -11.1493 0.9419 20 6 -0.2619 -10.9059 1.9091 21 6 0.4343 -9.7119 1.9096 22 17 1.6414 -9.4103 3.1202 23 6 1.6050 -7.3609 -0.3116 24 6 2.4176 -6.0659 -0.2393 25 1 -0.4849 0.8401 0.0004 26 1 0.6240 -2.5567 -0.8903 27 1 0.6246 -2.5571 0.8897 28 1 2.8719 -3.6044 0.8895 29 1 2.8719 -3.6044 -0.8905 30 1 1.4685 -5.1703 2.0867 31 1 0.0940 -4.2697 1.4017 32 1 -0.7647 -6.3416 0.3658 33 1 -0.5747 -6.5591 2.1224 34 1 -1.0091 -8.2551 -0.7824 35 1 -1.7587 -12.0850 0.9411 36 1 -0.0542 -11.6517 2.6622 37 1 0.9040 -7.3044 -1.1444 38 1 2.2785 -8.2050 -0.4594 39 1 2.9469 -5.9157 -1.1803 40 1 3.1375 -6.1329 0.5763 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593051808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:40 Heat of formation + Delta-G solvation = 6.411319 kcal Electronic energy + Delta-G solvation = -22993.844000 eV Core-core repulsion = 19473.304943 eV Total energy + Delta-G solvation = -3520.539057 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.43046 -39.60469 -37.77337 -37.27847 -36.69327 -35.04266 -32.38646 -31.96225 -31.63791 -30.39977 -27.60088 -25.56520 -24.68148 -23.99787 -23.00692 -22.05133 -20.70330 -18.87195 -18.50809 -17.38946 -17.06323 -16.58467 -16.34831 -16.28246 -16.01776 -15.54088 -15.38389 -15.16963 -14.72542 -14.62658 -14.18402 -14.07952 -13.39756 -13.32386 -13.27804 -13.15558 -13.05609 -12.82552 -12.55843 -12.31149 -12.30956 -12.12625 -11.94427 -11.86217 -11.77099 -11.65800 -11.26970 -11.18573 -10.53287 -10.07639 -9.69596 -9.57163 -9.21048 -8.19609 -6.30528 -0.15089 0.00121 0.96990 1.25558 1.40460 1.41769 1.52678 2.31513 2.40358 2.58391 3.02772 3.13961 3.64092 3.78609 3.95086 4.03289 4.07717 4.16401 4.18636 4.27346 4.36761 4.49224 4.55514 4.59390 4.68095 4.74589 4.76378 4.90461 4.92790 4.98514 5.03736 5.08133 5.11342 5.41684 5.46246 5.65513 5.73178 5.77816 6.05020 6.15918 6.27514 6.32913 6.86521 7.38427 8.92382 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.017650 B = 0.002658 C = 0.002429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.039059 B =10531.896981 C =11525.548598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.965 3.035 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.264 1.264 7 C -0.544 4.544 8 H 0.059 0.941 9 C 0.038 3.962 10 C 0.081 3.919 11 N -0.549 5.549 12 C 0.063 3.937 13 C 0.076 3.924 14 N -0.500 5.500 15 C 0.101 3.899 16 C -0.133 4.133 17 C -0.029 4.029 18 Cl -0.063 7.063 19 C -0.094 4.094 20 C -0.088 4.088 21 C -0.021 4.021 22 Cl -0.052 7.052 23 C 0.071 3.929 24 C 0.058 3.942 25 H 0.263 0.737 26 H -0.008 1.008 27 H -0.005 1.005 28 H 0.019 0.981 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.087 0.913 34 H 0.134 0.866 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.046 0.954 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.321 -27.379 2.738 27.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.046 4.046 11 N -0.274 5.274 12 C -0.066 4.066 13 C -0.050 4.050 14 N -0.222 5.222 15 C 0.005 3.995 16 C -0.154 4.154 17 C -0.057 4.057 18 Cl -0.034 7.034 19 C -0.113 4.113 20 C -0.107 4.107 21 C -0.049 4.049 22 Cl -0.023 7.023 23 C -0.055 4.055 24 C -0.070 4.070 25 H 0.072 0.928 26 H 0.011 0.989 27 H 0.013 0.987 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.152 0.848 35 H 0.187 0.813 36 H 0.189 0.811 37 H 0.065 0.935 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -1.436 -27.239 2.735 27.413 hybrid contribution 0.147 1.404 -0.095 1.415 sum -1.290 -25.834 2.641 26.001 Atomic orbital electron populations 1.70105 1.07767 1.27723 1.51470 1.25941 0.95741 1.03242 0.94684 0.85455 0.78645 0.78482 0.78504 1.19739 1.20757 1.18800 1.21626 0.93505 0.92323 1.50815 0.92253 1.18901 0.94160 0.91827 0.95041 1.21947 0.95353 0.88211 0.99103 1.62198 1.28219 1.02444 1.34545 1.22056 0.97186 0.96887 0.90441 1.22118 0.93266 0.88147 1.01502 1.59855 1.26417 0.99828 1.36071 1.18515 0.94569 0.91879 0.94505 1.21586 0.96607 0.97246 0.99975 1.20998 0.94687 0.95980 0.94000 1.98396 1.54802 1.95606 1.54629 1.21331 0.97738 0.99747 0.92437 1.21278 0.94450 0.95450 0.99506 1.21171 0.95245 0.95559 0.92909 1.98387 1.54347 1.96152 1.53444 1.22216 0.96917 0.97571 0.88834 1.22180 0.93945 0.89368 1.01469 0.92788 0.98948 0.98717 0.96297 0.91581 0.94781 0.91539 0.93785 0.89481 0.84812 0.81300 0.81117 0.93527 0.88630 0.89297 0.94470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.02 13.29 21.45 0.28 -56.74 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 6 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 7 C -0.54 -31.23 9.11 25.60 0.23 -31.00 16 8 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 9 C 0.04 2.04 4.91 29.85 0.15 2.19 16 10 C 0.08 3.45 4.90 86.31 0.42 3.88 16 11 N -0.55 -19.76 4.71 -895.70 -4.22 -23.98 16 12 C 0.06 2.15 5.41 86.31 0.47 2.62 16 13 C 0.08 2.11 5.36 86.31 0.46 2.57 16 14 N -0.50 -12.27 4.08 -694.68 -2.83 -15.10 16 15 C 0.10 2.14 4.72 38.21 0.18 2.32 16 16 C -0.13 -2.64 8.42 22.42 0.19 -2.45 16 17 C -0.03 -0.49 6.32 22.31 0.14 -0.34 16 18 Cl -0.06 -1.05 28.95 -2.72 -0.08 -1.13 16 19 C -0.09 -1.17 9.82 22.31 0.22 -0.95 16 20 C -0.09 -1.15 9.82 22.27 0.22 -0.93 16 21 C -0.02 -0.39 6.34 22.45 0.14 -0.25 16 22 Cl -0.05 -1.06 28.44 -2.72 -0.08 -1.13 16 23 C 0.07 1.70 5.31 86.31 0.46 2.15 16 24 C 0.06 1.65 5.61 86.31 0.48 2.14 16 25 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 26 H -0.01 -0.47 8.14 -2.38 -0.02 -0.49 16 27 H -0.01 -0.31 6.49 -2.38 -0.02 -0.33 16 28 H 0.02 0.81 8.12 -2.39 -0.02 0.79 16 29 H 0.07 2.72 8.03 -2.38 -0.02 2.70 16 30 H 0.03 1.18 8.14 -2.39 -0.02 1.17 16 31 H 0.07 2.62 6.34 -2.39 -0.02 2.61 16 32 H 0.04 1.26 7.44 -2.39 -0.02 1.24 16 33 H 0.09 2.24 8.13 -2.39 -0.02 2.22 16 34 H 0.13 2.83 7.06 -2.91 -0.02 2.81 16 35 H 0.17 1.17 8.06 -2.91 -0.02 1.15 16 36 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 37 H 0.05 1.14 7.24 -2.39 -0.02 1.12 16 38 H 0.10 1.96 8.13 -2.39 -0.02 1.94 16 39 H 0.09 2.33 8.07 -2.39 -0.02 2.31 16 40 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -64.57 353.47 0.37 -64.20 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.04 Total: 4.84 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 4.23 Total: -17.48 kcal Atomic # 7 Polarization: -89.05 SS G_CDS: -6.77 Total: -95.82 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -0.16 Total: -2.26 kcal Total: -64.57 0.37 -64.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593051808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.610 kcal (2) G-P(sol) polarization free energy of solvation -64.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds