Wall clock time and date at job start Tue Mar 31 2020 14:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.39819 * 110.99801 * 176.81239 * 14 13 12 16 16 C 1.38865 * 120.06651 * 63.79997 * 15 14 13 17 17 C 1.38120 * 119.95026 * 179.97438 * 16 15 14 18 18 C 1.38384 * 120.08224 * 0.02562 * 17 16 15 19 19 Cl 1.73604 * 119.93733 * 179.97438 * 18 17 16 20 20 C 1.38367 * 120.13213 * 0.02562 * 18 17 16 21 21 C 1.38216 * 120.04663 * 359.67591 * 20 18 17 22 22 Cl 1.73595 * 120.04215 * 180.32370 * 21 20 18 23 23 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 24 24 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 31 31 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 32 32 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 33 33 H 1.09001 * 109.51136 * 178.38097 * 13 12 11 34 34 H 1.08003 * 120.02196 * 0.02858 * 16 15 14 35 35 H 1.07996 * 119.95614 * 179.97438 * 17 16 15 36 36 H 1.07998 * 119.97505 * 180.02562 * 20 18 17 37 37 H 1.08999 * 109.48998 * 299.35229 * 23 14 13 38 38 H 1.09002 * 109.48626 * 179.28754 * 23 14 13 39 39 H 1.09001 * 109.48531 * 303.15255 * 24 11 10 40 40 H 1.09000 * 109.48854 * 63.21719 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1624 -8.7554 0.9101 16 6 -0.7999 -8.9984 -0.0612 17 6 -1.4888 -10.1955 -0.0652 18 6 -1.2216 -11.1527 0.8978 19 17 -2.0902 -12.6558 0.8897 20 6 -0.2642 -10.9138 1.8678 21 6 0.4327 -9.7202 1.8732 22 17 1.6397 -9.4240 3.0852 23 6 1.6048 -7.3594 -0.3380 24 6 2.4174 -6.0649 -0.2600 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 1.4682 -5.1797 2.0700 31 1 0.0938 -4.2759 1.3889 32 1 -0.7649 -6.3431 0.3437 33 1 -0.5751 -6.5686 2.0993 34 1 -1.0088 -8.2521 -0.8135 35 1 -2.2374 -10.3844 -0.8203 36 1 -0.0575 -11.6628 2.6179 37 1 0.9039 -7.2992 -1.1706 38 1 2.2783 -8.2030 -0.4895 39 1 2.9469 -5.9105 -1.2002 40 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595659058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:11 Heat of formation + Delta-G solvation = 23.044390 kcal Electronic energy + Delta-G solvation = -22891.784715 eV Core-core repulsion = 19371.966922 eV Total energy + Delta-G solvation = -3519.817793 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.52261 -38.56194 -37.02219 -36.49000 -35.43152 -33.03384 -31.28107 -30.91650 -30.64044 -28.90901 -26.08143 -23.89103 -23.48529 -23.24620 -22.06806 -20.34958 -19.47122 -18.00391 -16.83692 -16.29877 -16.28110 -15.18232 -15.09531 -14.75501 -14.61597 -14.36575 -14.31367 -14.03299 -13.88684 -13.39461 -12.90163 -12.56778 -12.51855 -12.29901 -12.15103 -11.89091 -11.46692 -11.35752 -11.24066 -11.10659 -11.03547 -10.96563 -10.88167 -10.61380 -10.51391 -9.85522 -9.37327 -9.31076 -9.14898 -8.84790 -8.65347 -8.33828 -7.76959 -6.00741 -4.03051 0.58393 0.71765 1.55557 2.08486 3.03507 3.32867 3.37337 3.39614 3.54840 4.32972 4.36208 4.51652 4.56581 4.75072 4.88233 5.02065 5.18388 5.25974 5.33632 5.35907 5.38362 5.45554 5.52982 5.67723 5.69462 5.81718 5.85292 6.02589 6.10813 6.16430 6.25742 6.35986 6.47407 6.81173 6.94809 7.06056 7.46112 7.52710 7.76887 7.87339 8.06051 8.42136 9.03840 9.60604 11.10572 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.002344 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.643065 B =11942.480422 C =12414.863161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.064 3.936 11 N -0.540 5.540 12 C 0.058 3.942 13 C 0.065 3.935 14 N -0.502 5.502 15 C 0.111 3.889 16 C -0.123 4.123 17 C -0.097 4.097 18 C -0.031 4.031 19 Cl -0.063 7.063 20 C -0.101 4.101 21 C -0.005 4.005 22 Cl -0.040 7.040 23 C 0.065 3.935 24 C 0.056 3.944 25 H 0.261 0.739 26 H 0.016 0.984 27 H 0.024 0.976 28 H 0.061 0.939 29 H 0.021 0.979 30 H 0.038 0.962 31 H 0.094 0.906 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.145 0.855 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.078 0.922 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.110 -25.276 2.093 25.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.562 4.562 8 H 0.071 0.929 9 C -0.008 4.008 10 C -0.063 4.063 11 N -0.265 5.265 12 C -0.070 4.070 13 C -0.061 4.061 14 N -0.224 5.224 15 C 0.016 3.984 16 C -0.144 4.144 17 C -0.116 4.116 18 C -0.058 4.058 19 Cl -0.034 7.034 20 C -0.121 4.121 21 C -0.033 4.033 22 Cl -0.011 7.011 23 C -0.061 4.061 24 C -0.072 4.072 25 H 0.071 0.929 26 H 0.035 0.965 27 H 0.042 0.958 28 H 0.079 0.921 29 H 0.040 0.960 30 H 0.056 0.944 31 H 0.112 0.888 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.160 0.840 35 H 0.157 0.843 36 H 0.162 0.838 37 H 0.066 0.934 38 H 0.094 0.906 39 H 0.097 0.903 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.207 -25.218 2.201 25.410 hybrid contribution 0.477 0.818 0.116 0.954 sum -1.730 -24.400 2.317 24.570 Atomic orbital electron populations 1.69958 1.06015 1.26696 1.50586 1.24988 0.94835 0.99167 0.95291 0.86659 0.79580 0.83148 0.78601 1.20244 1.21288 1.20282 1.21155 0.92951 0.91069 1.50977 0.92857 1.19080 0.93952 0.90104 0.97691 1.22320 0.96737 0.88130 0.99068 1.62291 1.27681 1.02608 1.33946 1.22159 0.97641 0.96200 0.91024 1.22305 0.93720 0.88931 1.01139 1.59884 1.26706 0.99686 1.36111 1.18744 0.93965 0.92065 0.93652 1.21719 0.95918 0.97461 0.99287 1.21035 1.00123 0.92432 0.98047 1.20737 0.97392 0.89330 0.98347 1.98384 1.75399 1.31419 1.98212 1.20853 0.95485 0.96674 0.99124 1.20753 0.94883 0.94278 0.93429 1.98391 1.53664 1.96017 1.53006 1.22251 0.96864 0.98168 0.88820 1.22110 0.94198 0.89854 1.01062 0.92943 0.96526 0.95803 0.92070 0.96044 0.94357 0.88796 0.93281 0.90396 0.84019 0.84329 0.83765 0.93374 0.90571 0.90339 0.94368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.62 13.29 55.43 0.74 -25.89 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.65 9.11 -34.44 -0.31 -14.96 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.74 4.91 -27.88 -0.14 0.60 16 10 C 0.06 1.32 4.90 -3.83 -0.02 1.30 16 11 N -0.54 -9.42 4.71 -234.47 -1.10 -10.52 16 12 C 0.06 0.95 5.41 -3.77 -0.02 0.93 16 13 C 0.07 0.87 5.36 -3.76 -0.02 0.85 16 14 N -0.50 -6.21 4.08 -170.91 -0.70 -6.91 16 15 C 0.11 1.22 4.72 -83.71 -0.40 0.83 16 16 C -0.12 -1.17 8.64 -39.39 -0.34 -1.52 16 17 C -0.10 -0.82 9.82 -39.57 -0.39 -1.21 16 18 C -0.03 -0.27 6.32 -39.48 -0.25 -0.52 16 19 Cl -0.06 -0.51 28.95 -51.86 -1.50 -2.01 16 20 C -0.10 -0.92 9.61 -39.54 -0.38 -1.30 16 21 C -0.01 -0.06 6.34 -39.31 -0.25 -0.30 16 22 Cl -0.04 -0.44 28.44 -51.86 -1.47 -1.92 16 23 C 0.07 0.79 5.31 -3.77 -0.02 0.77 16 24 C 0.06 0.81 5.61 -3.77 -0.02 0.78 16 25 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 26 H 0.02 0.44 6.49 -51.93 -0.34 0.11 16 27 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.06 1.24 8.03 -51.93 -0.42 0.83 16 29 H 0.02 0.45 8.12 -51.93 -0.42 0.02 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.09 1.71 6.34 -51.93 -0.33 1.38 16 32 H 0.05 0.66 7.45 -51.93 -0.39 0.27 16 33 H 0.08 0.98 8.13 -51.93 -0.42 0.56 16 34 H 0.14 1.28 7.06 -52.48 -0.37 0.91 16 35 H 0.14 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.05 0.58 7.24 -51.93 -0.38 0.20 16 38 H 0.08 0.83 8.13 -51.93 -0.42 0.41 16 39 H 0.08 1.06 8.07 -51.93 -0.42 0.64 16 40 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 353.48 15.07 5.33 5.33 Total: -1.00 -29.28 353.48 -11.94 -41.22 By element: Atomic # 1 Polarization: 1.91 SS G_CDS: -5.56 Total: -3.65 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.65 Total: -12.17 kcal Atomic # 7 Polarization: -42.25 SS G_CDS: -1.07 Total: -43.32 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -2.98 Total: -3.92 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.28 -11.94 -41.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595659058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.266 kcal (2) G-P(sol) polarization free energy of solvation -29.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds