Wall clock time and date at job start Tue Mar 31 2020 14:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.39819 * 110.99801 * 176.81239 * 14 13 12 16 16 C 1.38865 * 120.06651 * 63.79997 * 15 14 13 17 17 C 1.38120 * 119.95026 * 179.97438 * 16 15 14 18 18 C 1.38384 * 120.08224 * 0.02562 * 17 16 15 19 19 Cl 1.73604 * 119.93733 * 179.97438 * 18 17 16 20 20 C 1.38367 * 120.13213 * 0.02562 * 18 17 16 21 21 C 1.38216 * 120.04663 * 359.67591 * 20 18 17 22 22 Cl 1.73595 * 120.04215 * 180.32370 * 21 20 18 23 23 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 24 24 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 25 25 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 27 27 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 28 28 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 29 29 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 30 30 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 31 31 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 32 32 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 33 33 H 1.09001 * 109.51136 * 178.38097 * 13 12 11 34 34 H 1.08003 * 120.02196 * 0.02858 * 16 15 14 35 35 H 1.07996 * 119.95614 * 179.97438 * 17 16 15 36 36 H 1.07998 * 119.97505 * 180.02562 * 20 18 17 37 37 H 1.08999 * 109.48998 * 299.35229 * 23 14 13 38 38 H 1.09002 * 109.48626 * 179.28754 * 23 14 13 39 39 H 1.09001 * 109.48531 * 303.15255 * 24 11 10 40 40 H 1.09000 * 109.48854 * 63.21719 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1624 -8.7554 0.9101 16 6 -0.7999 -8.9984 -0.0612 17 6 -1.4888 -10.1955 -0.0652 18 6 -1.2216 -11.1527 0.8978 19 17 -2.0902 -12.6558 0.8897 20 6 -0.2642 -10.9138 1.8678 21 6 0.4327 -9.7202 1.8732 22 17 1.6397 -9.4240 3.0852 23 6 1.6048 -7.3594 -0.3380 24 6 2.4174 -6.0649 -0.2600 25 1 -0.4850 0.8401 -0.0004 26 1 0.6242 -2.5609 0.8844 27 1 0.6244 -2.5529 -0.8956 28 1 2.8718 -3.6005 -0.9002 29 1 2.8717 -3.6084 0.8798 30 1 1.4682 -5.1797 2.0700 31 1 0.0938 -4.2759 1.3889 32 1 -0.7649 -6.3431 0.3437 33 1 -0.5751 -6.5686 2.0993 34 1 -1.0088 -8.2521 -0.8135 35 1 -2.2374 -10.3844 -0.8203 36 1 -0.0575 -11.6628 2.6179 37 1 0.9039 -7.2992 -1.1706 38 1 2.2783 -8.2030 -0.4895 39 1 2.9469 -5.9105 -1.2002 40 1 3.1370 -6.1358 0.5556 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595659058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:11 Heat of formation + Delta-G solvation = 6.971290 kcal Electronic energy + Delta-G solvation = -22892.481696 eV Core-core repulsion = 19371.966922 eV Total energy + Delta-G solvation = -3520.514775 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.41203 -39.61219 -37.79050 -37.35148 -36.59356 -35.01288 -32.30735 -32.00435 -31.88944 -30.24036 -27.51498 -25.52221 -24.65118 -24.11113 -22.99511 -22.03108 -20.67511 -18.85208 -18.52322 -17.55780 -17.07399 -16.57888 -16.27262 -16.06425 -15.97666 -15.57287 -15.39085 -15.07921 -14.74770 -14.67005 -14.19480 -14.13323 -13.50509 -13.30751 -13.25865 -13.10808 -12.98616 -12.79470 -12.57008 -12.31881 -12.28655 -12.05003 -11.96772 -11.92696 -11.78903 -11.68660 -11.27262 -11.17905 -10.52038 -10.03327 -9.65221 -9.59152 -9.20060 -8.18969 -6.29769 -0.16849 0.00520 0.84780 1.32836 1.40944 1.43754 1.51590 2.30318 2.40952 2.61140 3.04313 3.14548 3.65553 3.80282 3.94743 4.06020 4.07683 4.15703 4.19589 4.30184 4.39262 4.49961 4.56818 4.60702 4.65211 4.70920 4.78303 4.88651 4.93675 4.98925 5.04783 5.12112 5.16723 5.38051 5.46701 5.66859 5.76982 5.78577 6.06545 6.18716 6.28956 6.33888 6.87084 7.39032 8.92784 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.026073 B = 0.002344 C = 0.002255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.643065 B =11942.480422 C =12414.863161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.038 3.962 10 C 0.081 3.919 11 N -0.548 5.548 12 C 0.062 3.938 13 C 0.077 3.923 14 N -0.505 5.505 15 C 0.096 3.904 16 C -0.123 4.123 17 C -0.091 4.091 18 C -0.031 4.031 19 Cl -0.054 7.054 20 C -0.099 4.099 21 C -0.013 4.013 22 Cl -0.050 7.050 23 C 0.072 3.928 24 C 0.057 3.943 25 H 0.263 0.737 26 H -0.006 1.006 27 H -0.007 1.007 28 H 0.066 0.934 29 H 0.017 0.983 30 H 0.031 0.969 31 H 0.066 0.934 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.052 0.948 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.672 -26.568 1.658 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.584 4.584 8 H 0.077 0.923 9 C 0.001 3.999 10 C -0.046 4.046 11 N -0.273 5.273 12 C -0.066 4.066 13 C -0.049 4.049 14 N -0.228 5.228 15 C 0.001 3.999 16 C -0.143 4.143 17 C -0.110 4.110 18 C -0.058 4.058 19 Cl -0.025 7.025 20 C -0.119 4.119 21 C -0.042 4.042 22 Cl -0.021 7.021 23 C -0.054 4.054 24 C -0.071 4.071 25 H 0.072 0.928 26 H 0.013 0.987 27 H 0.012 0.988 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.049 0.951 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.070 0.930 38 H 0.112 0.888 39 H 0.107 0.893 40 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.761 -26.542 1.765 26.659 hybrid contribution 0.277 1.117 0.249 1.178 sum -1.484 -25.425 2.014 25.547 Atomic orbital electron populations 1.70096 1.07739 1.27787 1.51413 1.25934 0.95745 1.03209 0.94693 0.85520 0.78286 0.78189 0.79154 1.19133 1.20858 1.19296 1.21604 0.93495 0.92358 1.50899 0.92289 1.18894 0.94156 0.91771 0.95078 1.21946 0.95362 0.88296 0.99038 1.62211 1.28160 1.02398 1.34484 1.22062 0.97174 0.97019 0.90385 1.22112 0.93257 0.87941 1.01620 1.59782 1.26762 0.99873 1.36340 1.18757 0.94933 0.91532 0.94713 1.21756 0.95577 0.98012 0.98947 1.21248 0.99930 0.91707 0.98136 1.20837 0.97146 0.89709 0.98149 1.98393 1.75124 1.30844 1.98168 1.20989 0.95107 0.96395 0.99418 1.20819 0.95173 0.94840 0.93321 1.98387 1.54157 1.96109 1.53448 1.22208 0.96971 0.97335 0.88921 1.22193 0.93981 0.89516 1.01364 0.92781 0.98724 0.98831 0.91586 0.96439 0.95052 0.91535 0.93227 0.89657 0.83531 0.82317 0.82478 0.92952 0.88782 0.89277 0.94741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 2 C 0.00 0.13 5.46 84.66 0.46 0.59 16 3 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 4 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 5 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 6 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 7 C -0.55 -31.06 9.11 25.60 0.23 -30.82 16 8 H 0.06 3.21 7.74 -2.91 -0.02 3.19 16 9 C 0.04 2.04 4.91 29.85 0.15 2.18 16 10 C 0.08 3.40 4.90 86.30 0.42 3.82 16 11 N -0.55 -19.25 4.71 -895.72 -4.22 -23.47 16 12 C 0.06 2.08 5.41 86.31 0.47 2.55 16 13 C 0.08 2.04 5.36 86.31 0.46 2.50 16 14 N -0.51 -11.93 4.08 -694.62 -2.83 -14.77 16 15 C 0.10 1.95 4.72 38.20 0.18 2.13 16 16 C -0.12 -2.08 8.64 22.39 0.19 -1.89 16 17 C -0.09 -1.30 9.82 22.28 0.22 -1.09 16 18 C -0.03 -0.48 6.32 22.34 0.14 -0.34 16 19 Cl -0.05 -0.75 28.95 -2.72 -0.08 -0.83 16 20 C -0.10 -1.61 9.61 22.30 0.21 -1.40 16 21 C -0.01 -0.26 6.34 22.44 0.14 -0.12 16 22 Cl -0.05 -1.06 28.44 -2.72 -0.08 -1.14 16 23 C 0.07 1.63 5.31 86.31 0.46 2.08 16 24 C 0.06 1.58 5.61 86.31 0.48 2.07 16 25 H 0.26 15.09 8.31 -92.70 -0.77 14.32 16 26 H -0.01 -0.31 6.49 -2.38 -0.02 -0.33 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.07 2.68 8.03 -2.38 -0.02 2.67 16 29 H 0.02 0.74 8.12 -2.39 -0.02 0.72 16 30 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.07 2.57 6.34 -2.39 -0.02 2.56 16 32 H 0.05 1.30 7.45 -2.39 -0.02 1.29 16 33 H 0.09 2.12 8.13 -2.39 -0.02 2.11 16 34 H 0.15 2.34 7.06 -2.91 -0.02 2.32 16 35 H 0.16 1.62 8.06 -2.91 -0.02 1.59 16 36 H 0.16 2.07 8.06 -2.91 -0.02 2.05 16 37 H 0.05 1.16 7.24 -2.39 -0.02 1.14 16 38 H 0.09 1.83 8.13 -2.39 -0.02 1.81 16 39 H 0.09 2.26 8.07 -2.39 -0.02 2.24 16 40 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -63.23 353.48 0.37 -62.86 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: 1.04 Total: 5.17 kcal Atomic # 6 Polarization: -21.95 SS G_CDS: 4.23 Total: -17.72 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -6.77 Total: -94.58 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 17 Polarization: -1.81 SS G_CDS: -0.16 Total: -1.97 kcal Total: -63.23 0.37 -62.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595659058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.831 kcal (2) G-P(sol) polarization free energy of solvation -63.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.859 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds