Wall clock time and date at job start Tue Mar 31 2020 15:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 120.00154 * 2 1 4 4 C 1.38214 * 119.99882 * 180.02562 * 3 2 1 5 5 C 1.38259 * 119.99794 * 359.95532 * 4 3 2 6 6 S 1.76202 * 119.99763 * 180.02562 * 5 4 3 7 7 O 1.42096 * 106.40294 * 356.19852 * 6 5 4 8 8 O 1.42102 * 106.39958 * 129.11819 * 6 5 4 9 9 N 1.65600 * 107.21935 * 242.65448 * 6 5 4 10 10 C 1.46500 * 119.99720 * 66.49697 * 9 6 5 11 11 H 1.08995 * 109.47259 * 24.11393 * 10 9 6 12 12 C 1.52998 * 109.47155 * 264.10868 * 10 9 6 13 13 C 1.50704 * 109.46612 * 144.11469 * 10 9 6 14 14 H 1.07994 * 120.00542 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99454 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00169 * 359.97438 * 15 13 10 17 17 Si 1.86807 * 119.99867 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46970 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46898 * 119.99780 * 17 15 13 20 20 H 1.48498 * 109.47165 * 239.99974 * 17 15 13 21 21 C 1.38212 * 120.00347 * 359.86286 * 5 4 3 22 22 C 1.50696 * 120.00435 * 180.20521 * 21 5 4 23 23 C 1.38220 * 119.99557 * 180.02562 * 2 1 3 24 24 N 1.48020 * 120.00059 * 359.97438 * 23 2 1 25 25 O 1.21800 * 119.99909 * 90.00072 * 24 23 2 26 26 O 1.21796 * 119.99933 * 269.72786 * 24 23 2 27 27 H 1.09002 * 109.46910 * 269.97657 * 1 2 3 28 28 H 1.09001 * 109.46438 * 29.97635 * 1 2 3 29 29 H 1.08999 * 109.47301 * 149.97768 * 1 2 3 30 30 H 1.07998 * 119.99944 * 359.97438 * 3 2 1 31 31 H 1.07992 * 120.00185 * 179.97438 * 4 3 2 32 32 H 0.97002 * 120.00214 * 246.48978 * 9 6 5 33 33 H 1.08995 * 109.47114 * 300.00813 * 12 10 9 34 34 H 1.09003 * 109.46472 * 60.00448 * 12 10 9 35 35 H 1.08998 * 109.47042 * 179.97438 * 12 10 9 36 36 H 0.97006 * 120.00162 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.47464 * 267.20289 * 22 21 5 38 38 H 1.09004 * 109.47260 * 27.19916 * 22 21 5 39 39 H 1.08999 * 109.47478 * 147.20028 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0001 6 16 6.0337 -0.0003 -0.0001 7 8 6.4350 1.3598 -0.0910 8 8 6.4349 -0.8600 1.0578 9 7 6.5239 -0.7274 -1.4049 10 6 6.2575 -0.0845 -2.6941 11 1 6.1401 0.9892 -2.5473 12 6 4.9740 -0.6604 -3.2956 13 6 7.4100 -0.3404 -3.6307 14 1 8.2565 -0.9233 -3.2988 15 6 7.3838 0.1695 -4.9114 16 7 6.3528 0.8788 -5.3158 17 14 8.8127 -0.1471 -6.0723 18 1 9.8401 -0.9665 -5.3806 19 1 8.3246 -0.8749 -7.2711 20 1 9.4091 1.1478 -6.4880 21 6 3.5806 -1.1971 0.0037 22 6 4.3340 -2.5022 0.0088 23 6 2.1981 -1.1971 -0.0005 24 7 1.4579 -2.4789 -0.0005 25 8 1.1530 -3.0061 -1.0554 26 8 1.1581 -3.0090 1.0542 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3632 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6584 2.1326 -0.0004 31 1 4.1205 2.1324 -0.0010 32 1 6.9875 -1.5788 -1.3742 33 1 5.0914 -1.7340 -3.4423 34 1 4.1404 -0.4753 -2.6181 35 1 4.7755 -0.1817 -4.2545 36 1 6.3342 1.2373 -6.2170 37 1 4.4728 -2.8457 -1.0163 38 1 5.3069 -2.3583 0.4786 39 1 3.7672 -3.2468 0.5677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598602129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:28 Heat of formation + Delta-G solvation = -53.966564 kcal Electronic energy + Delta-G solvation = -27088.072228 eV Core-core repulsion = 23126.249532 eV Total energy + Delta-G solvation = -3961.822697 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40551 -39.86426 -37.11828 -36.57638 -35.73923 -35.62458 -34.34210 -32.92749 -32.31356 -28.96376 -28.50571 -27.46027 -26.01010 -25.35830 -22.51443 -21.93129 -21.10777 -19.89352 -18.88323 -18.73753 -17.99784 -17.58882 -16.84237 -16.25457 -15.88607 -15.53010 -15.27340 -14.74298 -14.64061 -14.08796 -13.76358 -13.71410 -13.31414 -12.87684 -12.66580 -12.64983 -12.37776 -12.32275 -12.28828 -11.91519 -11.82889 -11.74144 -11.51407 -11.30892 -11.23283 -11.20716 -11.08191 -10.81844 -10.70331 -10.46298 -10.21617 -9.79922 -9.42323 -9.30584 -8.78061 -8.45960 -6.22842 -4.30508 0.19293 0.41632 0.53138 0.70143 1.25488 2.73918 3.19987 3.28357 3.30896 3.40728 3.89191 3.92620 4.08673 4.28320 4.35960 4.44322 4.70332 4.78968 4.94939 4.99372 5.07016 5.10614 5.17555 5.33027 5.39911 5.53471 5.63758 5.69349 5.83525 5.97659 6.13543 6.32689 6.60285 6.64970 6.84723 7.40895 7.48050 7.51859 7.68440 7.87375 8.11869 8.72167 9.36263 10.83423 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.004454 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.472884 B = 6284.480286 C = 6753.211853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.011 3.989 3 C -0.137 4.137 4 C 0.024 3.976 5 C -0.669 4.669 6 S 2.692 3.308 7 O -0.950 6.950 8 O -0.971 6.971 9 N -1.093 6.093 10 C 0.267 3.733 11 H 0.053 0.947 12 C -0.158 4.158 13 C -0.522 4.522 14 H 0.067 0.933 15 C 0.065 3.935 16 N -0.888 5.888 17 Si 0.903 3.097 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.081 3.919 22 C -0.185 4.185 23 C -0.057 4.057 24 N 0.024 4.976 25 O -0.135 6.135 26 O -0.144 6.144 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.153 0.847 31 H 0.162 0.838 32 H 0.412 0.588 33 H 0.036 0.964 34 H 0.007 0.993 35 H 0.096 0.904 36 H 0.265 0.735 37 H 0.108 0.892 38 H 0.117 0.883 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.802 -0.705 9.643 13.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.010 3.990 3 C -0.157 4.157 4 C 0.005 3.995 5 C -0.752 4.752 6 S 2.777 3.223 7 O -0.940 6.940 8 O -0.960 6.960 9 N -0.856 5.856 10 C 0.164 3.836 11 H 0.071 0.929 12 C -0.218 4.218 13 C -0.562 4.562 14 H 0.085 0.915 15 C -0.138 4.138 16 N -0.526 5.526 17 Si 0.730 3.270 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.079 3.921 22 C -0.241 4.241 23 C -0.138 4.138 24 N 0.553 4.447 25 O -0.359 6.359 26 O -0.366 6.366 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.171 0.829 31 H 0.179 0.821 32 H 0.247 0.753 33 H 0.055 0.945 34 H 0.026 0.974 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.127 0.873 38 H 0.136 0.864 39 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.102 0.594 10.144 13.642 hybrid contribution -0.204 -0.951 -1.065 1.442 sum -9.307 -0.357 9.079 13.006 Atomic orbital electron populations 1.21124 0.89146 1.04893 1.04158 1.19814 0.97184 0.90577 0.91443 1.21143 0.94174 0.97066 1.03274 1.21334 0.94504 0.97635 0.85999 1.31378 1.29467 0.97163 1.17201 1.02096 0.72911 0.74148 0.73171 1.93581 1.79270 1.34641 1.86534 1.93515 1.80917 1.67018 1.54596 1.55544 1.71228 1.36531 1.22280 1.18700 0.94476 0.92651 0.77810 0.92911 1.22301 0.95998 1.00464 1.02998 1.21215 1.03605 1.34577 0.96756 0.91499 1.24915 0.96337 0.94619 0.97952 1.69859 1.29308 1.34657 1.18762 0.86365 0.81998 0.78134 0.80474 1.19620 1.20887 1.20809 1.19067 0.89935 0.95917 0.87183 1.21812 1.03632 0.92851 1.05823 1.20620 0.91917 0.83320 1.17928 1.43500 0.98869 1.01933 1.00353 1.94588 1.55870 1.64765 1.20632 1.94549 1.56475 1.64794 1.20783 0.88976 0.88881 0.90933 0.82887 0.82050 0.75328 0.94481 0.97365 0.88516 0.92521 0.87332 0.86434 0.89856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.77 36.01 0.35 -0.90 16 2 C 0.01 0.14 5.88 -104.62 -0.62 -0.48 16 3 C -0.14 -1.52 9.70 -39.58 -0.38 -1.91 16 4 C 0.02 0.32 9.55 -39.58 -0.38 -0.06 16 5 C -0.67 -10.33 4.96 -39.58 -0.20 -10.52 16 6 S 2.69 46.67 4.97 -107.50 -0.53 46.13 16 7 O -0.95 -18.87 16.25 -57.17 -0.93 -19.80 16 8 O -0.97 -17.35 15.55 -57.17 -0.89 -18.24 16 9 N -1.09 -20.12 5.16 -5.88 -0.03 -20.15 16 10 C 0.27 5.99 2.92 -69.08 -0.20 5.78 16 11 H 0.05 1.29 7.45 -51.93 -0.39 0.91 16 12 C -0.16 -3.39 9.29 37.16 0.35 -3.05 16 13 C -0.52 -13.02 8.76 -34.44 -0.30 -13.32 16 14 H 0.07 1.63 7.81 -52.49 -0.41 1.22 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -23.41 11.32 55.43 0.63 -22.79 16 17 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 18 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 19 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 C 0.08 1.24 5.48 -104.63 -0.57 0.66 16 22 C -0.19 -2.64 9.06 36.00 0.33 -2.31 16 23 C -0.06 -0.83 6.09 -79.95 -0.49 -1.32 16 24 N 0.02 0.35 2.32 33.96 0.08 0.43 16 25 O -0.13 -2.13 19.13 -29.46 -0.56 -2.70 16 26 O -0.14 -2.19 19.12 -29.46 -0.56 -2.75 16 27 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.09 0.64 8.09 -51.93 -0.42 0.22 16 29 H 0.07 0.75 7.32 -51.93 -0.38 0.37 16 30 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 31 H 0.16 1.92 7.34 -52.49 -0.39 1.53 16 32 H 0.41 6.73 8.84 -34.47 -0.30 6.43 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.01 0.14 6.75 -51.93 -0.35 -0.21 16 35 H 0.10 2.33 6.07 -51.93 -0.32 2.01 16 36 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 37 H 0.11 1.48 8.14 -51.93 -0.42 1.05 16 38 H 0.12 1.67 4.86 -51.93 -0.25 1.42 16 39 H 0.08 1.11 7.42 -51.93 -0.39 0.73 16 LS Contribution 344.18 15.07 5.19 5.19 Total: -1.00 -30.22 344.18 -9.26 -39.49 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -4.42 Total: 6.05 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: -2.21 Total: -25.85 kcal Atomic # 7 Polarization: -43.18 SS G_CDS: 0.68 Total: -42.51 kcal Atomic # 8 Polarization: -40.54 SS G_CDS: -2.95 Total: -43.48 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 46.67 SS G_CDS: -0.53 Total: 46.13 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -30.22 -9.26 -39.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598602129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.480 kcal (2) G-P(sol) polarization free energy of solvation -30.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds