Wall clock time and date at job start Tue Mar 31 2020 15:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38253 * 120.00154 * 2 1 4 4 C 1.38214 * 119.99882 * 180.02562 * 3 2 1 5 5 C 1.38259 * 119.99794 * 359.95532 * 4 3 2 6 6 S 1.76202 * 119.99763 * 180.02562 * 5 4 3 7 7 O 1.42096 * 106.40294 * 356.19852 * 6 5 4 8 8 O 1.42102 * 106.39958 * 129.11819 * 6 5 4 9 9 N 1.65600 * 107.21935 * 242.65448 * 6 5 4 10 10 C 1.46500 * 119.99720 * 66.49697 * 9 6 5 11 11 H 1.08995 * 109.47259 * 24.11393 * 10 9 6 12 12 C 1.52998 * 109.47155 * 264.10868 * 10 9 6 13 13 C 1.50704 * 109.46612 * 144.11469 * 10 9 6 14 14 H 1.07994 * 120.00542 * 359.97438 * 13 10 9 15 15 C 1.37879 * 119.99454 * 179.97438 * 13 10 9 16 16 N 1.31514 * 120.00169 * 359.97438 * 15 13 10 17 17 Si 1.86807 * 119.99867 * 179.97438 * 15 13 10 18 18 H 1.48502 * 109.46970 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.46898 * 119.99780 * 17 15 13 20 20 H 1.48498 * 109.47165 * 239.99974 * 17 15 13 21 21 C 1.38212 * 120.00347 * 359.86286 * 5 4 3 22 22 C 1.50696 * 120.00435 * 180.20521 * 21 5 4 23 23 C 1.38220 * 119.99557 * 180.02562 * 2 1 3 24 24 N 1.48020 * 120.00059 * 359.97438 * 23 2 1 25 25 O 1.21800 * 119.99909 * 90.00072 * 24 23 2 26 26 O 1.21796 * 119.99933 * 269.72786 * 24 23 2 27 27 H 1.09002 * 109.46910 * 269.97657 * 1 2 3 28 28 H 1.09001 * 109.46438 * 29.97635 * 1 2 3 29 29 H 1.08999 * 109.47301 * 149.97768 * 1 2 3 30 30 H 1.07998 * 119.99944 * 359.97438 * 3 2 1 31 31 H 1.07992 * 120.00185 * 179.97438 * 4 3 2 32 32 H 0.97002 * 120.00214 * 246.48978 * 9 6 5 33 33 H 1.08995 * 109.47114 * 300.00813 * 12 10 9 34 34 H 1.09003 * 109.46472 * 60.00448 * 12 10 9 35 35 H 1.08998 * 109.47042 * 179.97438 * 12 10 9 36 36 H 0.97006 * 120.00162 * 180.02562 * 16 15 13 37 37 H 1.08996 * 109.47464 * 267.20289 * 22 21 5 38 38 H 1.09004 * 109.47260 * 27.19916 * 22 21 5 39 39 H 1.08999 * 109.47478 * 147.20028 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1984 1.1973 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.2717 -0.0002 -0.0001 6 16 6.0337 -0.0003 -0.0001 7 8 6.4350 1.3598 -0.0910 8 8 6.4349 -0.8600 1.0578 9 7 6.5239 -0.7274 -1.4049 10 6 6.2575 -0.0845 -2.6941 11 1 6.1401 0.9892 -2.5473 12 6 4.9740 -0.6604 -3.2956 13 6 7.4100 -0.3404 -3.6307 14 1 8.2565 -0.9233 -3.2988 15 6 7.3838 0.1695 -4.9114 16 7 6.3528 0.8788 -5.3158 17 14 8.8127 -0.1471 -6.0723 18 1 9.8401 -0.9665 -5.3806 19 1 8.3246 -0.8749 -7.2711 20 1 9.4091 1.1478 -6.4880 21 6 3.5806 -1.1971 0.0037 22 6 4.3340 -2.5022 0.0088 23 6 2.1981 -1.1971 -0.0005 24 7 1.4579 -2.4789 -0.0005 25 8 1.1530 -3.0061 -1.0554 26 8 1.1581 -3.0090 1.0542 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3632 0.8902 -0.5135 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6584 2.1326 -0.0004 31 1 4.1205 2.1324 -0.0010 32 1 6.9875 -1.5788 -1.3742 33 1 5.0914 -1.7340 -3.4423 34 1 4.1404 -0.4753 -2.6181 35 1 4.7755 -0.1817 -4.2545 36 1 6.3342 1.2373 -6.2170 37 1 4.4728 -2.8457 -1.0163 38 1 5.3069 -2.3583 0.4786 39 1 3.7672 -3.2468 0.5677 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598602129.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:27 Heat of formation + Delta-G solvation = -72.690419 kcal Electronic energy + Delta-G solvation = -27088.884156 eV Core-core repulsion = 23126.249532 eV Total energy + Delta-G solvation = -3962.634624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.54471 -40.91459 -38.56624 -37.75451 -37.40914 -37.09842 -35.37329 -34.17962 -33.93315 -30.25240 -29.91349 -28.47113 -27.26203 -27.09636 -23.60229 -22.99081 -22.83780 -21.10095 -20.09669 -20.04749 -19.29167 -19.03415 -18.16968 -17.71147 -17.32843 -16.84477 -16.53227 -16.17538 -15.71829 -15.43468 -14.98568 -14.64187 -14.60633 -14.30851 -14.08033 -13.73917 -13.70375 -13.56112 -13.39423 -13.34027 -13.18951 -13.04796 -12.93748 -12.89101 -12.82315 -12.45521 -12.41786 -12.34287 -12.26397 -12.03893 -11.99548 -11.16910 -10.87387 -10.62299 -10.37339 -10.17642 -8.15902 -6.29023 -0.90158 -0.78236 -0.64962 -0.50806 0.13099 1.44277 1.47737 1.57342 1.69137 2.01305 2.43916 2.56608 2.90058 3.14158 3.16581 3.20324 3.40488 3.66419 3.79593 3.86298 4.12443 4.17906 4.25244 4.37969 4.43813 4.51224 4.61245 4.69607 4.74758 4.82825 4.85439 4.92475 4.93644 5.08818 5.28997 5.56758 5.72418 5.99952 6.06413 6.27851 6.35635 6.80601 7.40642 8.89653 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.014990 B = 0.004454 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.472884 B = 6284.480286 C = 6753.211853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.015 3.985 3 C -0.123 4.123 4 C 0.015 3.985 5 C -0.683 4.683 6 S 2.708 3.292 7 O -0.979 6.979 8 O -0.978 6.978 9 N -1.095 6.095 10 C 0.275 3.725 11 H 0.029 0.971 12 C -0.145 4.145 13 C -0.539 4.539 14 H 0.067 0.933 15 C 0.020 3.980 16 N -0.913 5.913 17 Si 0.959 3.041 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.283 1.283 21 C 0.068 3.932 22 C -0.188 4.188 23 C -0.076 4.076 24 N 0.029 4.971 25 O -0.158 6.158 26 O -0.139 6.139 27 H 0.111 0.889 28 H 0.123 0.877 29 H 0.058 0.942 30 H 0.200 0.800 31 H 0.173 0.827 32 H 0.420 0.580 33 H 0.039 0.961 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.265 0.735 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.042 -0.162 10.118 14.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.014 3.986 3 C -0.141 4.141 4 C -0.004 4.004 5 C -0.770 4.770 6 S 2.797 3.203 7 O -0.970 6.970 8 O -0.969 6.969 9 N -0.857 5.857 10 C 0.170 3.830 11 H 0.046 0.954 12 C -0.205 4.205 13 C -0.579 4.579 14 H 0.086 0.914 15 C -0.181 4.181 16 N -0.551 5.551 17 Si 0.785 3.215 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.209 1.209 21 C 0.065 3.935 22 C -0.244 4.244 23 C -0.157 4.157 24 N 0.558 4.442 25 O -0.377 6.377 26 O -0.364 6.364 27 H 0.129 0.871 28 H 0.141 0.859 29 H 0.077 0.923 30 H 0.217 0.783 31 H 0.190 0.810 32 H 0.256 0.744 33 H 0.059 0.941 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.133 0.867 39 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -10.295 1.112 10.586 14.809 hybrid contribution 0.085 -1.095 -1.095 1.551 sum -10.210 0.017 9.491 13.940 Atomic orbital electron populations 1.21270 0.86739 1.05738 1.05548 1.20342 0.98973 0.89868 0.89466 1.21639 0.93189 0.98450 1.00841 1.21677 0.95897 0.97241 0.85613 1.30914 1.27657 0.98404 1.19992 1.01290 0.73499 0.73087 0.72394 1.93540 1.80616 1.36059 1.86748 1.93503 1.81827 1.67071 1.54461 1.55328 1.72219 1.36723 1.21413 1.18356 0.94199 0.91602 0.78890 0.95354 1.22100 0.96248 1.00166 1.01955 1.21593 1.04439 1.34349 0.97485 0.91447 1.25624 0.98401 0.94611 0.99426 1.69967 1.30657 1.35436 1.19075 0.85486 0.79492 0.77837 0.78676 1.19110 1.20594 1.20895 1.19131 0.90523 0.95945 0.87861 1.21833 1.03539 0.92969 1.06028 1.20841 0.91863 0.83695 1.19328 1.43590 0.98552 1.02024 1.00056 1.94590 1.56938 1.65334 1.20852 1.94532 1.56211 1.64898 1.20805 0.87101 0.85864 0.92265 0.78326 0.80955 0.74404 0.94145 0.95465 0.91060 0.92518 0.87134 0.86728 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.77 71.24 0.70 -1.31 16 2 C 0.01 0.32 5.88 -19.86 -0.12 0.20 16 3 C -0.12 -2.27 9.70 22.27 0.22 -2.06 16 4 C 0.01 0.36 9.55 22.27 0.21 0.57 16 5 C -0.68 -20.45 4.96 22.27 0.11 -20.34 16 6 S 2.71 93.87 4.97 -56.49 -0.28 93.58 16 7 O -0.98 -39.15 16.25 -128.00 -2.08 -41.23 16 8 O -0.98 -34.89 15.55 -128.00 -1.99 -36.88 16 9 N -1.09 -40.55 5.16 -172.52 -0.89 -41.44 16 10 C 0.27 12.41 2.92 44.25 0.13 12.54 16 11 H 0.03 1.43 7.45 -2.39 -0.02 1.41 16 12 C -0.15 -6.24 9.29 71.98 0.67 -5.57 16 13 C -0.54 -27.05 8.76 25.60 0.22 -26.82 16 14 H 0.07 3.28 7.81 -2.91 -0.02 3.26 16 15 C 0.02 1.02 5.30 84.66 0.45 1.47 16 16 N -0.91 -48.53 11.32 21.45 0.24 -48.29 16 17 Si 0.96 40.95 29.54 68.60 2.03 42.98 16 18 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 19 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 21 C 0.07 2.00 5.48 -19.87 -0.11 1.90 16 22 C -0.19 -5.29 9.06 71.23 0.65 -4.64 16 23 C -0.08 -2.11 6.09 36.37 0.22 -1.89 16 24 N 0.03 0.84 2.32 -46.46 -0.11 0.73 16 25 O -0.16 -4.92 19.13 18.89 0.36 -4.56 16 26 O -0.14 -4.05 19.12 18.89 0.36 -3.69 16 27 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.12 1.08 8.09 -2.39 -0.02 1.07 16 29 H 0.06 1.07 7.32 -2.39 -0.02 1.05 16 30 H 0.20 1.81 8.06 -2.91 -0.02 1.79 16 31 H 0.17 3.80 7.34 -2.91 -0.02 3.77 16 32 H 0.42 13.83 8.84 -96.74 -0.85 12.97 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.03 1.02 6.75 -2.39 -0.02 1.00 16 35 H 0.07 3.46 6.07 -2.39 -0.01 3.45 16 36 H 0.27 13.44 8.31 -92.70 -0.77 12.67 16 37 H 0.11 3.00 8.14 -2.39 -0.02 2.98 16 38 H 0.11 3.25 4.86 -2.39 -0.01 3.24 16 39 H 0.09 2.33 7.42 -2.39 -0.02 2.31 16 Total: -1.00 -64.88 344.18 1.24 -63.64 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: 0.25 Total: 21.12 kcal Atomic # 6 Polarization: -49.30 SS G_CDS: 3.35 Total: -45.96 kcal Atomic # 7 Polarization: -88.25 SS G_CDS: -0.76 Total: -89.00 kcal Atomic # 8 Polarization: -83.01 SS G_CDS: -3.35 Total: -86.36 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 93.87 SS G_CDS: -0.28 Total: 93.58 kcal Total: -64.88 1.24 -63.64 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598602129.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.054 kcal (2) G-P(sol) polarization free energy of solvation -64.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds