Wall clock time and date at job start Tue Mar 31 2020 15:15:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38257 * 120.00002 * 2 1 4 4 C 1.38215 * 119.99903 * 180.02562 * 3 2 1 5 5 C 1.38245 * 120.00257 * 0.02562 * 4 3 2 6 6 S 1.76205 * 120.00153 * 179.97438 * 5 4 3 7 7 O 1.42107 * 106.40225 * 131.37278 * 6 5 4 8 8 O 1.42103 * 106.40171 * 358.45455 * 6 5 4 9 9 N 1.65592 * 107.22066 * 244.91456 * 6 5 4 10 10 C 1.46498 * 120.00163 * 64.62236 * 9 6 5 11 11 H 1.09001 * 109.46878 * 335.65835 * 10 9 6 12 12 C 1.52997 * 109.46907 * 95.65510 * 10 9 6 13 13 C 1.50700 * 109.47312 * 215.65448 * 10 9 6 14 14 H 1.07997 * 120.00046 * 359.97438 * 13 10 9 15 15 C 1.37881 * 119.99922 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00286 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99722 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47195 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47088 * 120.00076 * 17 15 13 20 20 H 1.48500 * 109.46905 * 239.99855 * 17 15 13 21 21 C 1.38214 * 119.99909 * 0.25191 * 5 4 3 22 22 C 1.50706 * 119.99757 * 179.72798 * 21 5 4 23 23 C 1.38215 * 120.00230 * 180.02562 * 2 1 3 24 24 N 1.48016 * 119.99737 * 359.97438 * 23 2 1 25 25 O 1.21802 * 119.99389 * 90.00819 * 24 23 2 26 26 O 1.21796 * 120.00689 * 270.00334 * 24 23 2 27 27 H 1.08996 * 109.47181 * 89.99803 * 1 2 3 28 28 H 1.09004 * 109.46814 * 209.99907 * 1 2 3 29 29 H 1.08997 * 109.47124 * 329.99227 * 1 2 3 30 30 H 1.08010 * 120.00084 * 0.02562 * 3 2 1 31 31 H 1.08009 * 119.99531 * 179.97438 * 4 3 2 32 32 H 0.97008 * 120.00150 * 244.62578 * 9 6 5 33 33 H 1.09003 * 109.47148 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.47086 * 60.00452 * 12 10 9 35 35 H 1.08999 * 109.47346 * 299.99949 * 12 10 9 36 36 H 0.96998 * 120.00723 * 179.97438 * 16 15 13 37 37 H 1.09006 * 109.46827 * 84.48469 * 22 21 5 38 38 H 1.09000 * 109.46824 * 204.47441 * 22 21 5 39 39 H 1.09000 * 109.47272 * 324.48139 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0016 6 16 6.0337 0.0001 -0.0030 7 8 6.4358 -0.9014 1.0193 8 8 6.4349 1.3628 -0.0394 9 7 6.5228 -0.6698 -1.4361 10 6 6.2193 0.0040 -2.7011 11 1 5.3472 0.6447 -2.5713 12 6 7.4181 0.8543 -3.1263 13 6 5.9324 -1.0262 -3.7628 14 1 5.9725 -2.0778 -3.5198 15 6 5.6186 -0.6263 -5.0445 16 7 5.5703 0.6541 -5.3406 17 14 5.2622 -1.9034 -6.3604 18 1 5.3820 -3.2632 -5.7759 19 1 3.8852 -1.7072 -6.8806 20 1 6.2367 -1.7549 -7.4711 21 6 3.5806 -1.1969 -0.0074 22 6 4.3342 -2.5020 -0.0148 23 6 2.1981 -1.1970 -0.0005 24 7 1.4580 -2.4788 -0.0005 25 8 1.1533 -3.0060 -1.0554 26 8 1.1538 -3.0065 1.0542 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6582 2.1327 0.0004 31 1 4.1204 2.1327 -0.0010 32 1 7.0103 -1.5085 -1.4382 33 1 7.1921 1.3560 -4.0672 34 1 8.2903 0.2136 -3.2561 35 1 7.6257 1.5995 -2.3584 36 1 5.3499 0.9355 -6.2423 37 1 4.6021 -2.7725 1.0066 38 1 3.7056 -3.2820 -0.4442 39 1 5.2398 -2.3952 -0.6119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598602130.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:33 Heat of formation + Delta-G solvation = -54.587542 kcal Electronic energy + Delta-G solvation = -27138.813220 eV Core-core repulsion = 23176.963596 eV Total energy + Delta-G solvation = -3961.849624 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.34046 -39.78578 -37.04822 -36.50484 -35.71477 -35.58722 -34.30658 -32.87733 -32.33172 -28.95459 -28.39560 -27.41985 -25.95036 -25.32583 -22.44282 -21.87241 -21.12060 -19.86799 -18.81299 -18.69392 -17.93223 -17.54739 -16.71151 -16.35632 -15.81256 -15.45755 -15.25369 -14.69004 -14.61003 -14.05110 -13.75427 -13.59545 -13.23397 -12.79780 -12.64108 -12.47743 -12.35180 -12.26520 -12.19658 -11.85699 -11.85021 -11.66898 -11.66064 -11.27753 -11.17925 -11.13648 -11.08022 -10.81938 -10.64970 -10.40187 -10.23234 -9.73816 -9.35495 -9.30719 -8.76011 -8.46797 -6.24254 -4.33315 0.24882 0.48776 0.59895 0.74263 1.32382 2.79582 3.18629 3.27447 3.29633 3.41849 3.94402 3.96792 4.14088 4.26990 4.43071 4.47795 4.76490 4.82426 5.00582 5.06663 5.08405 5.13039 5.21422 5.38940 5.45600 5.58728 5.68871 5.74854 5.84519 6.03914 6.12502 6.39155 6.67811 6.91481 6.95146 7.44191 7.53658 7.55260 7.64087 7.90336 8.12215 8.69708 9.34541 10.81264 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.005939 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.167280 B = 4713.477035 C = 5932.917412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.012 3.988 3 C -0.138 4.138 4 C 0.024 3.976 5 C -0.669 4.669 6 S 2.692 3.308 7 O -0.971 6.971 8 O -0.954 6.954 9 N -1.097 6.097 10 C 0.274 3.726 11 H 0.040 0.960 12 C -0.158 4.158 13 C -0.529 4.529 14 H 0.065 0.935 15 C 0.067 3.933 16 N -0.885 5.885 17 Si 0.898 3.102 18 H -0.271 1.271 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.082 3.918 22 C -0.161 4.161 23 C -0.056 4.056 24 N 0.023 4.977 25 O -0.133 6.133 26 O -0.145 6.145 27 H 0.095 0.905 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.153 0.847 31 H 0.162 0.838 32 H 0.412 0.588 33 H 0.093 0.907 34 H 0.034 0.966 35 H 0.025 0.975 36 H 0.265 0.735 37 H 0.110 0.890 38 H 0.080 0.920 39 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.706 0.717 9.882 11.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.011 3.989 3 C -0.157 4.157 4 C 0.005 3.995 5 C -0.752 4.752 6 S 2.777 3.223 7 O -0.961 6.961 8 O -0.944 6.944 9 N -0.860 5.860 10 C 0.171 3.829 11 H 0.058 0.942 12 C -0.217 4.217 13 C -0.568 4.568 14 H 0.084 0.916 15 C -0.136 4.136 16 N -0.523 5.523 17 Si 0.726 3.274 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.208 1.208 21 C 0.080 3.920 22 C -0.217 4.217 23 C -0.137 4.137 24 N 0.553 4.447 25 O -0.357 6.357 26 O -0.366 6.366 27 H 0.113 0.887 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.171 0.829 31 H 0.179 0.821 32 H 0.247 0.753 33 H 0.111 0.889 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.128 0.872 38 H 0.098 0.902 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.972 2.007 10.404 12.163 hybrid contribution -1.031 -1.410 -1.240 2.142 sum -7.003 0.597 9.165 11.549 Atomic orbital electron populations 1.21125 0.89149 1.04571 1.04480 1.19809 0.97187 0.90580 0.91317 1.21131 0.94181 0.97048 1.03380 1.21325 0.94534 0.97578 0.86029 1.31291 1.29265 0.97186 1.17488 1.02100 0.72961 0.74100 0.73116 1.93569 1.80881 1.65212 1.56403 1.93575 1.79362 1.34749 1.86709 1.55658 1.69957 1.37715 1.22635 1.18588 0.93944 0.91647 0.78745 0.94229 1.22232 0.98119 0.98811 1.02573 1.21290 1.48531 0.92964 0.94045 0.91637 1.24899 0.94750 0.95541 0.98447 1.69869 1.47713 1.14063 1.20652 0.86433 0.78047 0.81559 0.81400 1.19556 1.20811 1.20798 1.19076 0.90002 0.95944 0.86970 1.21502 1.01972 0.92635 1.05630 1.20599 0.91896 0.83342 1.17861 1.43497 0.98908 1.01924 1.00364 1.94602 1.55837 1.64701 1.20587 1.94540 1.56406 1.64870 1.20814 0.88700 0.91029 0.89019 0.82906 0.82087 0.75332 0.88854 0.94683 0.95566 0.92511 0.87158 0.90153 0.88276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 9.77 36.00 0.35 -1.01 16 2 C 0.01 0.16 5.88 -104.62 -0.62 -0.45 16 3 C -0.14 -1.65 9.70 -39.58 -0.38 -2.03 16 4 C 0.02 0.34 9.55 -39.59 -0.38 -0.04 16 5 C -0.67 -10.85 5.72 -39.59 -0.23 -11.08 16 6 S 2.69 46.86 4.85 -107.50 -0.52 46.33 16 7 O -0.97 -17.44 16.50 -57.17 -0.94 -18.38 16 8 O -0.95 -18.34 16.31 -57.17 -0.93 -19.27 16 9 N -1.10 -20.33 4.26 -5.88 -0.03 -20.36 16 10 C 0.27 6.17 2.76 -69.08 -0.19 5.97 16 11 H 0.04 0.94 7.83 -51.93 -0.41 0.54 16 12 C -0.16 -3.57 9.29 37.16 0.35 -3.23 16 13 C -0.53 -13.00 8.76 -34.44 -0.30 -13.30 16 14 H 0.07 1.57 7.81 -52.49 -0.41 1.16 16 15 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 16 N -0.89 -23.28 11.32 55.43 0.63 -22.65 16 17 Si 0.90 20.06 29.54 -169.99 -5.02 15.04 16 18 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 21 C 0.08 1.35 5.87 -104.62 -0.61 0.73 16 22 C -0.16 -2.47 8.43 36.01 0.30 -2.17 16 23 C -0.06 -0.88 6.09 -79.95 -0.49 -1.37 16 24 N 0.02 0.37 2.18 33.96 0.07 0.45 16 25 O -0.13 -2.28 19.10 -29.46 -0.56 -2.84 16 26 O -0.14 -2.30 19.13 -29.46 -0.56 -2.86 16 27 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.76 7.32 -51.93 -0.38 0.38 16 29 H 0.09 0.65 8.09 -51.93 -0.42 0.23 16 30 H 0.15 1.23 8.06 -52.48 -0.42 0.80 16 31 H 0.16 1.98 7.34 -52.48 -0.38 1.60 16 32 H 0.41 6.80 8.44 -34.47 -0.29 6.51 16 33 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 34 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.03 0.55 7.71 -51.93 -0.40 0.15 16 36 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 37 H 0.11 1.54 8.02 -51.93 -0.42 1.12 16 38 H 0.08 1.21 7.14 -51.93 -0.37 0.84 16 39 H 0.10 1.50 5.42 -51.93 -0.28 1.22 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -30.04 345.48 -9.43 -39.48 By element: Atomic # 1 Polarization: 10.70 SS G_CDS: -4.48 Total: 6.22 kcal Atomic # 6 Polarization: -24.07 SS G_CDS: -2.29 Total: -26.36 kcal Atomic # 7 Polarization: -43.23 SS G_CDS: 0.68 Total: -42.56 kcal Atomic # 8 Polarization: -40.36 SS G_CDS: -3.00 Total: -43.36 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Atomic # 16 Polarization: 46.86 SS G_CDS: -0.52 Total: 46.33 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.04 -9.43 -39.48 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598602130.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.112 kcal (2) G-P(sol) polarization free energy of solvation -30.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds