Wall clock time and date at job start Tue Mar 31 2020 15:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38257 * 120.00002 * 2 1 4 4 C 1.38215 * 119.99903 * 180.02562 * 3 2 1 5 5 C 1.38245 * 120.00257 * 0.02562 * 4 3 2 6 6 S 1.76205 * 120.00153 * 179.97438 * 5 4 3 7 7 O 1.42107 * 106.40225 * 131.37278 * 6 5 4 8 8 O 1.42103 * 106.40171 * 358.45455 * 6 5 4 9 9 N 1.65592 * 107.22066 * 244.91456 * 6 5 4 10 10 C 1.46498 * 120.00163 * 64.62236 * 9 6 5 11 11 H 1.09001 * 109.46878 * 335.65835 * 10 9 6 12 12 C 1.52997 * 109.46907 * 95.65510 * 10 9 6 13 13 C 1.50700 * 109.47312 * 215.65448 * 10 9 6 14 14 H 1.07997 * 120.00046 * 359.97438 * 13 10 9 15 15 C 1.37881 * 119.99922 * 179.97438 * 13 10 9 16 16 N 1.31508 * 120.00286 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 119.99722 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47195 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47088 * 120.00076 * 17 15 13 20 20 H 1.48500 * 109.46905 * 239.99855 * 17 15 13 21 21 C 1.38214 * 119.99909 * 0.25191 * 5 4 3 22 22 C 1.50706 * 119.99757 * 179.72798 * 21 5 4 23 23 C 1.38215 * 120.00230 * 180.02562 * 2 1 3 24 24 N 1.48016 * 119.99737 * 359.97438 * 23 2 1 25 25 O 1.21802 * 119.99389 * 90.00819 * 24 23 2 26 26 O 1.21796 * 120.00689 * 270.00334 * 24 23 2 27 27 H 1.08996 * 109.47181 * 89.99803 * 1 2 3 28 28 H 1.09004 * 109.46814 * 209.99907 * 1 2 3 29 29 H 1.08997 * 109.47124 * 329.99227 * 1 2 3 30 30 H 1.08010 * 120.00084 * 0.02562 * 3 2 1 31 31 H 1.08009 * 119.99531 * 179.97438 * 4 3 2 32 32 H 0.97008 * 120.00150 * 244.62578 * 9 6 5 33 33 H 1.09003 * 109.47148 * 180.02562 * 12 10 9 34 34 H 1.09001 * 109.47086 * 60.00452 * 12 10 9 35 35 H 1.08999 * 109.47346 * 299.99949 * 12 10 9 36 36 H 0.96998 * 120.00723 * 179.97438 * 16 15 13 37 37 H 1.09006 * 109.46827 * 84.48469 * 22 21 5 38 38 H 1.09000 * 109.46824 * 204.47441 * 22 21 5 39 39 H 1.09000 * 109.47272 * 324.48139 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1973 0.0000 4 6 3.5804 1.1973 -0.0005 5 6 4.2717 0.0001 -0.0016 6 16 6.0337 0.0001 -0.0030 7 8 6.4358 -0.9014 1.0193 8 8 6.4349 1.3628 -0.0394 9 7 6.5228 -0.6698 -1.4361 10 6 6.2193 0.0040 -2.7011 11 1 5.3472 0.6447 -2.5713 12 6 7.4181 0.8543 -3.1263 13 6 5.9324 -1.0262 -3.7628 14 1 5.9725 -2.0778 -3.5198 15 6 5.6186 -0.6263 -5.0445 16 7 5.5703 0.6541 -5.3406 17 14 5.2622 -1.9034 -6.3604 18 1 5.3820 -3.2632 -5.7759 19 1 3.8852 -1.7072 -6.8806 20 1 6.2367 -1.7549 -7.4711 21 6 3.5806 -1.1969 -0.0074 22 6 4.3342 -2.5020 -0.0148 23 6 2.1981 -1.1970 -0.0005 24 7 1.4580 -2.4788 -0.0005 25 8 1.1533 -3.0060 -1.0554 26 8 1.1538 -3.0065 1.0542 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6582 2.1327 0.0004 31 1 4.1204 2.1327 -0.0010 32 1 7.0103 -1.5085 -1.4382 33 1 7.1921 1.3560 -4.0672 34 1 8.2903 0.2136 -3.2561 35 1 7.6257 1.5995 -2.3584 36 1 5.3499 0.9355 -6.2423 37 1 4.6021 -2.7725 1.0066 38 1 3.7056 -3.2820 -0.4442 39 1 5.2398 -2.3952 -0.6119 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000598602130.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:32 Heat of formation + Delta-G solvation = -72.780185 kcal Electronic energy + Delta-G solvation = -27139.602113 eV Core-core repulsion = 23176.963596 eV Total energy + Delta-G solvation = -3962.638516 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.097 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.56169 -40.89479 -38.49493 -37.76758 -37.39980 -37.04862 -35.39060 -34.20219 -33.93438 -30.31137 -29.84298 -28.48351 -27.25147 -27.10939 -23.58087 -23.00093 -22.87786 -21.11633 -20.08546 -20.06379 -19.24222 -19.03431 -18.09457 -17.81755 -17.29626 -16.84045 -16.51786 -16.16585 -15.74387 -15.38160 -15.00498 -14.62223 -14.56626 -14.24298 -14.10761 -13.69632 -13.64561 -13.48031 -13.39139 -13.25681 -13.23388 -13.09632 -13.04712 -12.94435 -12.87247 -12.43428 -12.40264 -12.37132 -12.25276 -12.10646 -12.02433 -11.14972 -10.88037 -10.61358 -10.37341 -10.19329 -8.16974 -6.30265 -0.90001 -0.78281 -0.62947 -0.49966 0.12439 1.41081 1.45723 1.54019 1.68703 2.01076 2.42288 2.58556 2.89506 3.13771 3.13999 3.23785 3.38170 3.67215 3.78485 3.84938 4.11948 4.19202 4.20563 4.36838 4.41658 4.50334 4.60334 4.64706 4.73236 4.81696 4.88361 4.92136 5.09193 5.14729 5.28999 5.57215 5.72778 5.99408 6.03546 6.27086 6.34294 6.79705 7.39864 8.88219 Molecular weight = 328.10amu Principal moments of inertia in cm(-1) A = 0.010519 B = 0.005939 C = 0.004718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2661.167280 B = 4713.477035 C = 5932.917412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.013 3.987 3 C -0.124 4.124 4 C 0.015 3.985 5 C -0.686 4.686 6 S 2.709 3.291 7 O -0.978 6.978 8 O -0.974 6.974 9 N -1.098 6.098 10 C 0.281 3.719 11 H 0.026 0.974 12 C -0.153 4.153 13 C -0.537 4.537 14 H 0.067 0.933 15 C 0.024 3.976 16 N -0.910 5.910 17 Si 0.950 3.050 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.280 1.280 21 C 0.064 3.936 22 C -0.165 4.165 23 C -0.078 4.078 24 N 0.029 4.971 25 O -0.166 6.166 26 O -0.131 6.131 27 H 0.101 0.899 28 H 0.062 0.938 29 H 0.128 0.872 30 H 0.201 0.799 31 H 0.176 0.824 32 H 0.419 0.581 33 H 0.072 0.928 34 H 0.039 0.961 35 H 0.033 0.967 36 H 0.265 0.735 37 H 0.120 0.880 38 H 0.077 0.923 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.978 1.313 10.500 13.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.012 3.988 3 C -0.143 4.143 4 C -0.004 4.004 5 C -0.772 4.772 6 S 2.798 3.202 7 O -0.968 6.968 8 O -0.964 6.964 9 N -0.860 5.860 10 C 0.176 3.824 11 H 0.044 0.956 12 C -0.212 4.212 13 C -0.577 4.577 14 H 0.085 0.915 15 C -0.177 4.177 16 N -0.549 5.549 17 Si 0.777 3.223 18 H -0.192 1.192 19 H -0.210 1.210 20 H -0.206 1.206 21 C 0.062 3.938 22 C -0.222 4.222 23 C -0.159 4.159 24 N 0.558 4.442 25 O -0.383 6.383 26 O -0.359 6.359 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.147 0.853 30 H 0.218 0.782 31 H 0.194 0.806 32 H 0.256 0.744 33 H 0.090 0.910 34 H 0.058 0.942 35 H 0.052 0.948 36 H 0.075 0.925 37 H 0.138 0.862 38 H 0.096 0.904 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.205 2.578 10.961 13.368 hybrid contribution -0.694 -1.564 -1.304 2.152 sum -7.899 1.013 9.657 12.517 Atomic orbital electron populations 1.21261 0.86707 1.06005 1.05253 1.20356 0.99025 0.89894 0.89543 1.21665 0.93345 0.98405 1.00891 1.21710 0.95888 0.97306 0.85530 1.30990 1.28060 0.98275 1.19851 1.01360 0.73263 0.73266 0.72336 1.93554 1.81615 1.65358 1.56247 1.93543 1.80366 1.35661 1.86824 1.55466 1.70719 1.37942 1.21877 1.18280 0.93271 0.91183 0.79713 0.95597 1.22138 0.98388 0.98982 1.01713 1.21598 1.47846 0.93535 0.94672 0.91467 1.25545 0.94957 0.96926 1.00233 1.69966 1.48627 1.15281 1.20997 0.85620 0.77584 0.79799 0.79344 1.19220 1.21022 1.20551 1.19180 0.90626 0.96125 0.87893 1.21552 1.01800 0.92622 1.06198 1.20861 0.91917 0.83736 1.19397 1.43592 0.98571 1.02032 1.00053 1.94604 1.57370 1.65457 1.20886 1.94514 1.55722 1.64834 1.20780 0.88032 0.91898 0.85320 0.78232 0.80630 0.74446 0.90979 0.94207 0.94828 0.92521 0.86196 0.90419 0.88559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.77 71.23 0.70 -1.57 16 2 C 0.01 0.31 5.88 -19.87 -0.12 0.20 16 3 C -0.12 -2.54 9.70 22.27 0.22 -2.32 16 4 C 0.01 0.38 9.55 22.27 0.21 0.59 16 5 C -0.69 -21.66 5.72 22.27 0.13 -21.54 16 6 S 2.71 93.19 4.85 -56.49 -0.27 92.92 16 7 O -0.98 -34.68 16.50 -128.00 -2.11 -36.79 16 8 O -0.97 -36.90 16.31 -128.00 -2.09 -38.99 16 9 N -1.10 -40.57 4.26 -172.53 -0.73 -41.30 16 10 C 0.28 12.61 2.76 44.24 0.12 12.73 16 11 H 0.03 1.25 7.83 -2.39 -0.02 1.23 16 12 C -0.15 -6.92 9.29 71.98 0.67 -6.25 16 13 C -0.54 -26.35 8.76 25.60 0.22 -26.13 16 14 H 0.07 3.20 7.81 -2.91 -0.02 3.18 16 15 C 0.02 1.23 5.30 84.66 0.45 1.68 16 16 N -0.91 -47.99 11.32 21.45 0.24 -47.74 16 17 Si 0.95 40.94 29.54 68.60 2.03 42.97 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 20 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 21 C 0.06 2.06 5.87 -19.86 -0.12 1.95 16 22 C -0.17 -5.09 8.43 71.24 0.60 -4.49 16 23 C -0.08 -2.37 6.09 36.37 0.22 -2.15 16 24 N 0.03 0.91 2.18 -46.47 -0.10 0.81 16 25 O -0.17 -5.70 19.10 18.88 0.36 -5.34 16 26 O -0.13 -4.03 19.13 18.89 0.36 -3.67 16 27 H 0.10 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.06 1.18 7.32 -2.39 -0.02 1.16 16 29 H 0.13 1.18 8.09 -2.39 -0.02 1.16 16 30 H 0.20 2.12 8.06 -2.91 -0.02 2.09 16 31 H 0.18 3.96 7.34 -2.91 -0.02 3.94 16 32 H 0.42 13.83 8.44 -96.74 -0.82 13.02 16 33 H 0.07 3.59 6.07 -2.39 -0.01 3.58 16 34 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.03 1.42 7.71 -2.39 -0.02 1.40 16 36 H 0.27 13.36 8.31 -92.71 -0.77 12.59 16 37 H 0.12 3.34 8.02 -2.38 -0.02 3.32 16 38 H 0.08 2.37 7.14 -2.39 -0.02 2.35 16 39 H 0.10 2.95 5.42 -2.39 -0.01 2.94 16 Total: -1.00 -63.78 345.48 1.28 -62.50 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: 0.29 Total: 21.93 kcal Atomic # 6 Polarization: -50.60 SS G_CDS: 3.30 Total: -47.30 kcal Atomic # 7 Polarization: -87.65 SS G_CDS: -0.59 Total: -88.24 kcal Atomic # 8 Polarization: -81.30 SS G_CDS: -3.48 Total: -84.78 kcal Atomic # 14 Polarization: 40.94 SS G_CDS: 2.03 Total: 42.97 kcal Atomic # 16 Polarization: 93.19 SS G_CDS: -0.27 Total: 92.92 kcal Total: -63.78 1.28 -62.50 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598602130.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.280 kcal (2) G-P(sol) polarization free energy of solvation -63.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds