Wall clock time and date at job start Tue Mar 31 2020 15:35:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40345 * 119.84678 * 2 1 4 4 C 1.35466 * 119.46090 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.42399 * 179.97438 * 4 3 2 6 6 F 1.39900 * 109.46923 * 4.99145 * 5 4 3 7 7 F 1.39901 * 109.46500 * 244.99649 * 5 4 3 8 8 F 1.39888 * 109.47268 * 124.99589 * 5 4 3 9 9 N 1.36656 * 119.14904 * 0.24467 * 4 3 2 10 10 N 1.39952 * 132.32534 * 180.36672 * 9 4 3 11 11 C 1.32422 * 108.72347 * 179.60656 * 10 9 4 12 12 C 1.47761 * 125.70573 * 179.73356 * 11 10 9 13 13 O 1.21588 * 120.00204 * 186.65288 * 12 11 10 14 14 N 1.34779 * 119.99967 * 6.65759 * 12 11 10 15 15 C 1.46499 * 119.99803 * 5.52695 * 14 12 11 16 16 C 1.36884 * 120.00180 * 185.51887 * 14 12 11 17 17 H 1.08001 * 119.99835 * 345.81285 * 16 14 12 18 18 C 1.39043 * 119.99916 * 165.80587 * 16 14 12 19 19 N 1.31378 * 119.99825 * 330.15123 * 18 16 14 20 20 Si 1.86797 * 120.00147 * 150.15260 * 18 16 14 21 21 H 1.48502 * 109.47194 * 94.98841 * 20 18 16 22 22 H 1.48492 * 109.47202 * 214.99498 * 20 18 16 23 23 H 1.48502 * 109.46867 * 334.99503 * 20 18 16 24 24 C 1.39966 * 108.59448 * 359.77461 * 11 10 9 25 25 C 1.37264 * 119.75307 * 359.52704 * 9 4 3 26 26 N 1.31136 * 119.85414 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.46934 * 90.00676 * 1 2 3 28 28 H 1.09002 * 109.46905 * 209.99742 * 1 2 3 29 29 H 1.08995 * 109.47477 * 330.00038 * 1 2 3 30 30 H 1.08001 * 120.26851 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.47656 * 35.42222 * 15 14 12 32 32 H 1.09004 * 109.47210 * 155.42339 * 15 14 12 33 33 H 1.09002 * 109.47297 * 275.42449 * 15 14 12 34 34 H 0.96995 * 119.99540 * 179.97438 * 19 18 16 35 35 H 1.07995 * 126.20444 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2055 1.2173 0.0000 4 6 3.5601 1.2082 -0.0005 5 6 4.3320 2.5025 -0.0011 6 9 3.4423 3.5761 0.1137 7 9 5.0492 2.6171 -1.1969 8 9 5.2209 2.5159 1.0789 9 7 4.2177 0.0102 -0.0061 10 7 5.5782 -0.3180 -0.0015 11 6 5.6973 -1.6368 -0.0022 12 6 6.9698 -2.3878 -0.0039 13 8 6.9618 -3.5975 -0.1264 14 7 8.1395 -1.7319 0.1306 15 6 8.1451 -0.2918 0.3994 16 6 9.3223 -2.4113 0.0162 17 1 9.3302 -3.4908 0.0482 18 6 10.5135 -1.7117 -0.1413 19 7 10.5155 -0.5461 -0.7474 20 14 12.1111 -2.4290 0.5088 21 1 12.8067 -3.1576 -0.5823 22 1 12.9806 -1.3322 1.0046 23 1 11.8157 -3.3678 1.6209 24 6 4.4162 -2.2007 -0.0022 25 6 3.5009 -1.1604 -0.0013 26 7 2.1598 -1.1373 -0.0005 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6674 2.1537 -0.0004 31 1 7.3030 -0.0391 1.0438 32 1 9.0766 -0.0182 0.8949 33 1 8.0597 0.2536 -0.5405 34 1 11.3464 -0.0579 -0.8569 35 1 4.1834 -3.2552 -0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601024458.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:14 Heat of formation + Delta-G solvation = -40.195222 kcal Electronic energy + Delta-G solvation = -28261.261804 eV Core-core repulsion = 23655.028337 eV Total energy + Delta-G solvation = -4606.233467 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -50.47257 -48.03480 -47.85140 -42.29325 -38.97313 -37.64735 -34.94050 -34.66240 -32.45637 -31.70152 -29.88713 -28.25683 -27.09148 -26.42224 -25.33714 -23.55734 -22.43818 -21.75192 -19.47284 -19.04533 -18.80217 -18.47051 -17.48438 -17.36996 -16.92698 -16.15175 -15.33960 -15.06231 -14.72187 -14.69539 -14.63936 -14.34316 -14.31391 -14.22990 -14.05413 -14.01220 -13.89509 -13.73883 -13.11543 -12.82590 -12.67070 -12.52159 -12.07151 -11.85128 -11.69149 -11.55050 -11.33248 -11.11719 -10.77546 -10.50698 -10.38038 -9.90796 -9.32465 -9.10772 -8.72634 -8.01112 -7.86266 -6.66757 -3.92140 0.01074 0.68981 1.69516 2.13599 2.20308 3.07173 3.13655 3.16654 3.16956 3.25575 3.52633 3.62966 3.97840 3.99683 4.15803 4.19141 4.47565 4.64455 4.67313 4.90084 4.97869 5.19266 5.23797 5.26082 5.44221 5.69245 5.80431 6.05556 6.28927 6.43330 6.60643 6.78729 7.10801 7.34847 7.41492 7.46116 7.91692 8.27179 8.96412 9.18030 9.80629 10.37018 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.004046 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.448577 B = 6919.546667 C = 8281.263459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.189 3.811 3 C -0.170 4.170 4 C 0.100 3.900 5 C 0.522 3.478 6 F -0.164 7.164 7 F -0.156 7.156 8 F -0.155 7.155 9 N -0.308 5.308 10 N -0.270 5.270 11 C 0.113 3.887 12 C 0.482 3.518 13 O -0.581 6.581 14 N -0.399 5.399 15 C 0.102 3.898 16 C -0.310 4.310 17 H 0.114 0.886 18 C 0.040 3.960 19 N -0.835 5.835 20 Si 0.921 3.079 21 H -0.274 1.274 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.190 4.190 25 C 0.239 3.761 26 N -0.434 5.434 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.176 0.824 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.275 0.725 35 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.356 9.949 2.297 20.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.021 3.979 3 C -0.196 4.196 4 C -0.018 4.018 5 C 0.467 3.533 6 F -0.146 7.146 7 F -0.138 7.138 8 F -0.137 7.137 9 N -0.082 5.082 10 N -0.100 5.100 11 C -0.046 4.046 12 C 0.269 3.731 13 O -0.466 6.466 14 N -0.113 5.113 15 C -0.042 4.042 16 C -0.439 4.439 17 H 0.131 0.869 18 C -0.169 4.169 19 N -0.470 5.470 20 Si 0.746 3.254 21 H -0.199 1.199 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.221 4.221 25 C 0.016 3.984 26 N -0.146 5.146 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.193 0.807 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -16.654 9.647 2.176 19.369 hybrid contribution 0.922 0.356 0.114 0.995 sum -15.731 10.002 2.290 18.782 Atomic orbital electron populations 1.20789 0.86370 1.04596 1.04180 1.21799 0.97910 0.86614 0.91536 1.21570 0.90630 1.02459 1.04943 1.20330 0.92216 0.85130 1.04118 1.17631 0.77705 0.82532 0.75451 1.93210 1.68125 1.57358 1.95869 1.93318 1.78616 1.96168 1.45654 1.93311 1.69004 1.96510 1.54829 1.47117 1.08604 1.04239 1.48201 1.78826 0.86050 1.15084 1.30065 1.22910 0.96678 0.89847 0.95204 1.16486 0.80850 0.86690 0.89051 1.90637 1.85085 1.12419 1.58411 1.43693 1.04739 1.08327 1.54561 1.21774 1.00638 0.80898 1.00864 1.19850 0.81733 0.93801 1.48505 0.86868 1.25425 1.00208 0.96083 0.95175 1.70175 1.29415 1.15065 1.32359 0.86013 0.80361 0.79053 0.79986 1.19949 1.20402 1.18756 1.21043 0.88016 0.98883 1.14179 1.20443 0.87659 0.86196 1.04066 1.67991 1.04343 1.28728 1.13507 0.89145 0.89382 0.89597 0.80698 0.93097 0.90731 0.92324 0.91428 0.80935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.58 10.19 36.01 0.37 -0.21 16 2 C 0.19 1.99 6.83 -82.10 -0.56 1.43 16 3 C -0.17 -1.71 9.11 -39.78 -0.36 -2.07 16 4 C 0.10 1.40 6.29 -81.43 -0.51 0.88 16 5 C 0.52 6.95 3.39 36.01 0.12 7.07 16 6 F -0.16 -1.68 16.01 2.25 0.04 -1.64 16 7 F -0.16 -2.36 17.30 2.25 0.04 -2.32 16 8 F -0.16 -2.33 17.30 2.25 0.04 -2.29 16 9 N -0.31 -5.50 3.90 -8.49 -0.03 -5.54 16 10 N -0.27 -5.68 9.25 33.22 0.31 -5.38 16 11 C 0.11 2.55 6.69 -83.07 -0.56 1.99 16 12 C 0.48 12.67 7.62 -12.37 -0.09 12.58 16 13 O -0.58 -16.61 16.51 5.29 0.09 -16.53 16 14 N -0.40 -10.65 3.02 -123.30 -0.37 -11.02 16 15 C 0.10 2.46 7.70 59.85 0.46 2.92 16 16 C -0.31 -8.58 9.32 -15.00 -0.14 -8.72 16 17 H 0.11 3.23 7.38 -52.49 -0.39 2.85 16 18 C 0.04 1.03 4.66 -17.45 -0.08 0.95 16 19 N -0.84 -21.75 11.37 55.50 0.63 -21.12 16 20 Si 0.92 19.68 29.64 -169.99 -5.04 14.64 16 21 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 24 C -0.19 -3.78 10.66 -38.81 -0.41 -4.19 16 25 C 0.24 4.24 7.90 -155.40 -1.23 3.02 16 26 N -0.43 -6.35 10.40 -8.46 -0.09 -6.44 16 27 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.26 8.09 -51.93 -0.42 -0.16 16 30 H 0.18 1.01 7.17 -52.49 -0.38 0.64 16 31 H 0.05 1.14 5.96 -51.93 -0.31 0.83 16 32 H 0.07 1.81 6.49 -51.93 -0.34 1.47 16 33 H 0.06 1.46 8.04 -51.93 -0.42 1.04 16 34 H 0.28 6.63 8.31 -40.82 -0.34 6.29 16 35 H 0.17 3.22 8.06 -52.49 -0.42 2.80 16 LS Contribution 322.16 15.07 4.85 4.85 Total: -1.00 -32.15 322.16 -5.19 -37.34 By element: Atomic # 1 Polarization: 2.45 SS G_CDS: -2.65 Total: -0.20 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: -3.00 Total: 15.64 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.45 Total: -49.49 kcal Atomic # 8 Polarization: -16.61 SS G_CDS: 0.09 Total: -16.53 kcal Atomic # 9 Polarization: -6.37 SS G_CDS: 0.11 Total: -6.25 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.04 Total: 14.64 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.15 -5.19 -37.34 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024458.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.858 kcal (2) G-P(sol) polarization free energy of solvation -32.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.79 seconds