Wall clock time and date at job start Tue Mar 31 2020 15:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40345 * 119.84678 * 2 1 4 4 C 1.35466 * 119.46090 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.42399 * 179.97438 * 4 3 2 6 6 F 1.39900 * 109.46923 * 4.99145 * 5 4 3 7 7 F 1.39901 * 109.46500 * 244.99649 * 5 4 3 8 8 F 1.39888 * 109.47268 * 124.99589 * 5 4 3 9 9 N 1.36656 * 119.14904 * 0.24467 * 4 3 2 10 10 N 1.39952 * 132.32534 * 180.36672 * 9 4 3 11 11 C 1.32422 * 108.72347 * 179.60656 * 10 9 4 12 12 C 1.47761 * 125.70573 * 179.73356 * 11 10 9 13 13 O 1.21588 * 120.00204 * 186.65288 * 12 11 10 14 14 N 1.34779 * 119.99967 * 6.65759 * 12 11 10 15 15 C 1.46499 * 119.99803 * 5.52695 * 14 12 11 16 16 C 1.36884 * 120.00180 * 185.51887 * 14 12 11 17 17 H 1.08001 * 119.99835 * 345.81285 * 16 14 12 18 18 C 1.39043 * 119.99916 * 165.80587 * 16 14 12 19 19 N 1.31378 * 119.99825 * 330.15123 * 18 16 14 20 20 Si 1.86797 * 120.00147 * 150.15260 * 18 16 14 21 21 H 1.48502 * 109.47194 * 94.98841 * 20 18 16 22 22 H 1.48492 * 109.47202 * 214.99498 * 20 18 16 23 23 H 1.48502 * 109.46867 * 334.99503 * 20 18 16 24 24 C 1.39966 * 108.59448 * 359.77461 * 11 10 9 25 25 C 1.37264 * 119.75307 * 359.52704 * 9 4 3 26 26 N 1.31136 * 119.85414 * 180.02562 * 2 1 3 27 27 H 1.08996 * 109.46934 * 90.00676 * 1 2 3 28 28 H 1.09002 * 109.46905 * 209.99742 * 1 2 3 29 29 H 1.08995 * 109.47477 * 330.00038 * 1 2 3 30 30 H 1.08001 * 120.26851 * 359.97438 * 3 2 1 31 31 H 1.09005 * 109.47656 * 35.42222 * 15 14 12 32 32 H 1.09004 * 109.47210 * 155.42339 * 15 14 12 33 33 H 1.09002 * 109.47297 * 275.42449 * 15 14 12 34 34 H 0.96995 * 119.99540 * 179.97438 * 19 18 16 35 35 H 1.07995 * 126.20444 * 180.02562 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2055 1.2173 0.0000 4 6 3.5601 1.2082 -0.0005 5 6 4.3320 2.5025 -0.0011 6 9 3.4423 3.5761 0.1137 7 9 5.0492 2.6171 -1.1969 8 9 5.2209 2.5159 1.0789 9 7 4.2177 0.0102 -0.0061 10 7 5.5782 -0.3180 -0.0015 11 6 5.6973 -1.6368 -0.0022 12 6 6.9698 -2.3878 -0.0039 13 8 6.9618 -3.5975 -0.1264 14 7 8.1395 -1.7319 0.1306 15 6 8.1451 -0.2918 0.3994 16 6 9.3223 -2.4113 0.0162 17 1 9.3302 -3.4908 0.0482 18 6 10.5135 -1.7117 -0.1413 19 7 10.5155 -0.5461 -0.7474 20 14 12.1111 -2.4290 0.5088 21 1 12.8067 -3.1576 -0.5823 22 1 12.9806 -1.3322 1.0046 23 1 11.8157 -3.3678 1.6209 24 6 4.4162 -2.2007 -0.0022 25 6 3.5009 -1.1604 -0.0013 26 7 2.1598 -1.1373 -0.0005 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6674 2.1537 -0.0004 31 1 7.3030 -0.0391 1.0438 32 1 9.0766 -0.0182 0.8949 33 1 8.0597 0.2536 -0.5405 34 1 11.3464 -0.0579 -0.8569 35 1 4.1834 -3.2552 -0.0023 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601024458.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:13 Heat of formation + Delta-G solvation = -61.263612 kcal Electronic energy + Delta-G solvation = -28262.175398 eV Core-core repulsion = 23655.028337 eV Total energy + Delta-G solvation = -4607.147061 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -51.52184 -49.02986 -48.98250 -43.62396 -40.66564 -39.17609 -36.89479 -35.93379 -34.08572 -33.20593 -31.11785 -29.51971 -28.31837 -28.02948 -27.21817 -25.15686 -23.47523 -23.19096 -20.97373 -20.35651 -19.88564 -19.57715 -19.19544 -18.81394 -18.47132 -17.49634 -17.07764 -16.38600 -16.32531 -15.98375 -15.89551 -15.77471 -15.73992 -15.36669 -15.34480 -15.10582 -15.03439 -14.76625 -14.59842 -14.16185 -13.93094 -13.69171 -13.59200 -13.45125 -13.11414 -12.83357 -12.73198 -12.69296 -12.47084 -12.20649 -12.11843 -11.21670 -11.07624 -10.82450 -10.63738 -9.97080 -9.31968 -8.61711 -6.02168 -1.08670 -0.51153 0.48976 0.60115 0.97997 1.37910 1.41938 1.56905 1.95164 2.07787 2.14385 2.29094 2.41862 2.54011 2.89582 2.91594 2.95504 3.05414 3.52499 3.60355 3.66815 4.06725 4.16672 4.35568 4.55174 4.63642 4.77364 4.79784 4.85131 5.02675 5.10394 5.14102 5.32971 5.34164 5.82102 5.96194 6.28203 6.33558 6.93750 7.18277 7.78831 8.43806 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017393 B = 0.004046 C = 0.003380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.448577 B = 6919.546667 C = 8281.263459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.209 3.791 3 C -0.120 4.120 4 C 0.061 3.939 5 C 0.527 3.473 6 F -0.139 7.139 7 F -0.171 7.171 8 F -0.169 7.169 9 N -0.310 5.310 10 N -0.291 5.291 11 C 0.089 3.911 12 C 0.476 3.524 13 O -0.617 6.617 14 N -0.415 5.415 15 C 0.126 3.874 16 C -0.363 4.363 17 H 0.089 0.911 18 C 0.012 3.988 19 N -0.861 5.861 20 Si 0.993 3.007 21 H -0.268 1.268 22 H -0.261 1.261 23 H -0.267 1.267 24 C -0.220 4.220 25 C 0.257 3.743 26 N -0.457 5.457 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.128 0.872 30 H 0.233 0.767 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.042 0.958 34 H 0.285 0.715 35 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.866 12.629 2.719 24.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.043 3.957 3 C -0.144 4.144 4 C -0.055 4.055 5 C 0.472 3.528 6 F -0.121 7.121 7 F -0.152 7.152 8 F -0.150 7.150 9 N -0.084 5.084 10 N -0.122 5.122 11 C -0.069 4.069 12 C 0.264 3.736 13 O -0.505 6.505 14 N -0.130 5.130 15 C -0.018 4.018 16 C -0.490 4.490 17 H 0.107 0.893 18 C -0.195 4.195 19 N -0.495 5.495 20 Si 0.814 3.186 21 H -0.193 1.193 22 H -0.185 1.185 23 H -0.191 1.191 24 C -0.252 4.252 25 C 0.031 3.969 26 N -0.170 5.170 27 H 0.133 0.867 28 H 0.108 0.892 29 H 0.146 0.854 30 H 0.250 0.750 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.095 0.905 35 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -20.171 12.399 2.592 23.818 hybrid contribution 1.425 -0.224 -0.060 1.444 sum -18.745 12.175 2.532 22.495 Atomic orbital electron populations 1.21137 0.81773 1.06821 1.06214 1.22973 1.00415 0.85494 0.86806 1.22453 0.88860 1.04681 0.98389 1.20906 0.93597 0.84084 1.06895 1.17538 0.77632 0.83030 0.74597 1.93256 1.67018 1.56082 1.95697 1.93294 1.79128 1.96271 1.46489 1.93287 1.69699 1.96616 1.55446 1.47097 1.07536 1.05785 1.47953 1.78601 0.88468 1.14034 1.31089 1.22249 0.95789 0.90772 0.98090 1.17018 0.82108 0.86660 0.87769 1.90564 1.86281 1.14130 1.59518 1.43851 1.04773 1.09075 1.55278 1.21545 1.00620 0.79594 1.00027 1.19819 0.83293 0.93247 1.52648 0.89302 1.26273 1.02763 0.96400 0.94044 1.70205 1.30818 1.16100 1.32404 0.84969 0.75925 0.78593 0.79090 1.19316 1.18529 1.19113 1.20972 0.87746 0.99623 1.16822 1.20427 0.88840 0.85433 1.02154 1.68195 1.02234 1.30789 1.15812 0.86720 0.89200 0.85412 0.75010 0.91856 0.91477 0.93897 0.90531 0.81141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.44 10.19 71.24 0.73 0.29 16 2 C 0.21 3.28 6.83 43.18 0.29 3.58 16 3 C -0.12 -1.69 9.11 22.14 0.20 -1.49 16 4 C 0.06 1.51 6.29 41.17 0.26 1.77 16 5 C 0.53 12.83 3.39 71.24 0.24 13.07 16 6 F -0.14 -2.24 16.01 44.97 0.72 -1.52 16 7 F -0.17 -4.97 17.30 44.97 0.78 -4.20 16 8 F -0.17 -4.93 17.30 44.97 0.78 -4.15 16 9 N -0.31 -10.88 3.90 -180.76 -0.70 -11.59 16 10 N -0.29 -12.72 9.25 -48.81 -0.45 -13.18 16 11 C 0.09 4.27 6.69 41.99 0.28 4.55 16 12 C 0.48 27.04 7.62 86.76 0.66 27.71 16 13 O -0.62 -38.28 16.51 -3.99 -0.07 -38.34 16 14 N -0.42 -23.79 3.02 -662.27 -2.00 -25.79 16 15 C 0.13 6.40 7.70 127.77 0.98 7.39 16 16 C -0.36 -21.43 9.32 84.10 0.78 -20.64 16 17 H 0.09 5.52 7.38 -2.91 -0.02 5.50 16 18 C 0.01 0.65 4.66 84.95 0.40 1.05 16 19 N -0.86 -46.26 11.37 21.68 0.25 -46.01 16 20 Si 0.99 41.52 29.64 68.60 2.03 43.56 16 21 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 22 H -0.26 -10.09 7.11 99.48 0.71 -9.38 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 24 C -0.22 -9.21 10.66 22.77 0.24 -8.97 16 25 C 0.26 9.01 7.90 132.99 1.05 10.06 16 26 N -0.46 -12.14 10.40 -180.69 -1.88 -14.02 16 27 H 0.11 0.17 8.14 -2.39 -0.02 0.15 16 28 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.13 -0.36 8.09 -2.39 -0.02 -0.38 16 30 H 0.23 0.66 7.17 -2.91 -0.02 0.64 16 31 H 0.06 3.01 5.96 -2.38 -0.01 2.99 16 32 H 0.07 3.43 6.49 -2.39 -0.02 3.41 16 33 H 0.04 2.27 8.04 -2.39 -0.02 2.25 16 34 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 35 H 0.17 6.88 8.06 -2.91 -0.02 6.85 16 Total: -1.00 -78.67 322.16 6.75 -71.92 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: 1.18 Total: 4.97 kcal Atomic # 6 Polarization: 32.23 SS G_CDS: 6.12 Total: 38.36 kcal Atomic # 7 Polarization: -105.80 SS G_CDS: -4.79 Total: -110.58 kcal Atomic # 8 Polarization: -38.28 SS G_CDS: -0.07 Total: -38.34 kcal Atomic # 9 Polarization: -12.15 SS G_CDS: 2.28 Total: -9.87 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.56 kcal Total: -78.67 6.75 -71.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601024458.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.657 kcal (2) G-P(sol) polarization free energy of solvation -78.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds