Wall clock time and date at job start Tue Mar 31 2020 15:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27576 * 126.41567 * 2 1 4 4 N 1.39145 * 113.16457 * 180.02562 * 3 2 1 5 5 C 1.39553 * 124.43941 * 180.02562 * 4 3 2 6 6 C 1.39396 * 120.15132 * 359.97236 * 5 4 3 7 7 C 1.38621 * 117.91553 * 180.02562 * 6 5 4 8 8 C 1.38778 * 118.03146 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00055 * 179.97438 * 8 7 6 10 10 F 1.39907 * 109.46946 * 89.99755 * 9 8 7 11 11 F 1.39891 * 109.47318 * 210.00163 * 9 8 7 12 12 F 1.39902 * 109.47041 * 330.00135 * 9 8 7 13 13 N 1.31840 * 119.99746 * 359.97438 * 8 7 6 14 14 N 1.28347 * 122.27681 * 359.71279 * 13 8 7 15 15 C 1.35307 * 111.16397 * 0.09103 * 4 3 2 16 16 O 1.21280 * 127.68355 * 179.97438 * 15 4 3 17 17 C 1.51433 * 126.41764 * 180.02562 * 2 1 3 18 18 H 1.09002 * 110.60531 * 61.30032 * 17 2 1 19 19 C 1.52997 * 110.61087 * 298.48061 * 17 2 1 20 20 C 1.50701 * 109.47212 * 177.14901 * 19 17 2 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 17 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99594 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99875 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47061 * 90.00257 * 24 22 20 26 26 H 1.48497 * 109.46906 * 209.99430 * 24 22 20 27 27 H 1.48498 * 109.47403 * 329.99876 * 24 22 20 28 28 H 1.09004 * 109.46721 * 269.95783 * 1 2 3 29 29 H 1.09002 * 109.47036 * 29.95187 * 1 2 3 30 30 H 1.09000 * 109.47083 * 149.95809 * 1 2 3 31 31 H 1.08005 * 121.04068 * 0.02562 * 6 5 4 32 32 H 1.08000 * 120.98520 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47153 * 57.14902 * 19 17 2 34 34 H 1.09001 * 109.46832 * 297.15093 * 19 17 2 35 35 H 0.97002 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7077 -0.0006 5 6 4.6508 1.6471 -0.0002 6 6 4.3572 3.0098 0.0003 7 6 5.4180 3.9022 0.0001 8 6 6.7056 3.3847 0.0000 9 6 7.8915 4.3147 -0.0007 10 9 8.2587 4.6031 1.3181 11 9 8.9631 3.7033 -0.6602 12 9 7.5534 5.5010 -0.6607 13 7 6.8915 2.0794 0.0007 14 7 5.9138 1.2480 0.0068 15 6 3.8050 -0.6325 -0.0030 16 8 4.8578 -1.2347 -0.0045 17 6 2.4060 -1.2186 -0.0005 18 1 2.2395 -1.8178 -0.8958 19 6 2.1763 -2.0580 1.2578 20 6 3.0310 -3.2977 1.1978 21 1 3.6742 -3.4695 0.3474 22 6 2.9927 -4.2120 2.2291 23 7 3.7391 -5.2936 2.1769 24 14 1.8808 -3.9145 3.7003 25 1 0.5492 -4.5201 3.4448 26 1 2.4824 -4.5335 4.9086 27 1 1.7269 -2.4535 3.9170 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3633 -0.8896 -0.5145 31 1 3.3353 3.3593 0.0007 32 1 5.2474 4.9686 0.0000 33 1 1.1260 -2.3434 1.3174 34 1 2.4446 -1.4739 2.1381 35 1 3.7119 -5.9371 2.9022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601944960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:10 Heat of formation + Delta-G solvation = -53.889489 kcal Electronic energy + Delta-G solvation = -27320.279150 eV Core-core repulsion = 22713.451855 eV Total energy + Delta-G solvation = -4606.827295 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.41970 -47.97375 -47.84347 -41.88784 -40.85004 -37.30072 -35.34253 -33.79911 -33.27526 -31.93857 -30.99827 -28.84509 -27.04903 -26.59772 -25.01528 -23.46346 -22.31909 -20.51702 -20.04034 -19.04130 -18.82061 -18.76260 -18.15548 -17.33459 -16.71177 -16.35863 -15.31288 -15.08863 -14.85427 -14.79779 -14.66951 -14.63022 -14.34245 -14.29267 -14.05443 -14.00945 -13.96639 -13.63067 -13.55946 -13.05146 -12.80913 -12.61566 -12.29245 -12.07715 -11.86271 -11.66164 -11.32053 -10.79446 -10.73818 -10.62728 -10.21797 -10.15367 -9.87847 -9.62017 -9.12429 -8.65006 -8.59752 -6.12693 -4.14150 0.22097 0.40935 1.63652 1.74028 2.20950 2.59350 3.19152 3.23452 3.27382 3.28660 3.30045 3.53206 3.71326 3.98819 4.09284 4.11208 4.32763 4.33793 4.38725 4.52226 4.88533 5.02803 5.19391 5.29359 5.35829 5.38228 5.48586 5.60492 5.66809 5.91820 6.12877 6.30096 6.68695 6.84347 7.43876 7.52490 8.01334 8.30416 8.38178 8.95892 9.44757 11.00297 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.003241 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.528129 B = 8637.556308 C = 9514.856254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.135 3.865 3 N -0.260 5.260 4 N -0.419 5.419 5 C 0.362 3.638 6 C -0.128 4.128 7 C -0.054 4.054 8 C -0.069 4.069 9 C 0.538 3.462 10 F -0.168 7.168 11 F -0.160 7.160 12 F -0.171 7.171 13 N -0.150 5.150 14 N -0.237 5.237 15 C 0.504 3.496 16 O -0.404 6.404 17 C -0.120 4.120 18 H 0.139 0.861 19 C 0.018 3.982 20 C -0.527 4.527 21 H 0.084 0.916 22 C 0.074 3.926 23 N -0.891 5.891 24 Si 0.873 3.127 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.268 1.268 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.095 0.905 31 H 0.172 0.828 32 H 0.167 0.833 33 H 0.038 0.962 34 H 0.020 0.980 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.602 21.540 -5.465 22.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.057 4.057 3 N -0.067 5.067 4 N -0.232 5.232 5 C 0.127 3.873 6 C -0.160 4.160 7 C -0.082 4.082 8 C -0.218 4.218 9 C 0.482 3.518 10 F -0.149 7.149 11 F -0.142 7.142 12 F -0.152 7.152 13 N 0.006 4.994 14 N -0.088 5.088 15 C 0.290 3.710 16 O -0.264 6.264 17 C -0.144 4.144 18 H 0.157 0.843 19 C -0.021 4.021 20 C -0.565 4.565 21 H 0.102 0.898 22 C -0.128 4.128 23 N -0.528 5.528 24 Si 0.700 3.300 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.193 1.193 28 H 0.114 0.886 29 H 0.103 0.897 30 H 0.114 0.886 31 H 0.190 0.810 32 H 0.184 0.816 33 H 0.056 0.944 34 H 0.038 0.962 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.670 20.673 -5.365 21.524 hybrid contribution -1.164 0.601 0.915 1.598 sum -3.834 21.273 -4.450 22.070 Atomic orbital electron populations 1.20462 0.84038 1.04629 1.04662 1.25834 0.97755 0.91729 0.90362 1.74680 0.86414 1.26570 1.19068 1.47397 1.02327 1.05786 1.67656 1.19948 0.88459 0.88066 0.90818 1.22008 1.02319 0.90758 1.00867 1.21965 0.90382 1.02610 0.93263 1.22587 0.93941 0.95073 1.10168 1.17408 0.81822 0.78287 0.74309 1.93257 1.92284 1.93743 1.35645 1.93259 1.57491 1.82675 1.80735 1.93209 1.92279 1.48629 1.81101 1.73061 1.23658 0.99516 1.03192 1.73564 0.94973 1.25890 1.14369 1.21791 0.92690 0.80587 0.75908 1.90869 1.30854 1.63803 1.40870 1.21961 0.89759 0.95880 1.06820 0.84330 1.19415 0.98747 0.95107 0.88824 1.20992 1.25049 1.02539 1.07927 0.89786 1.24943 0.95263 0.94870 0.97757 1.69894 1.39259 1.10699 1.32974 0.86902 0.81232 0.78807 0.83088 1.19863 1.21064 1.19267 0.88644 0.89698 0.88627 0.81047 0.81581 0.94367 0.96215 0.92479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.49 36.01 0.38 -0.26 16 2 C 0.14 1.78 6.93 -78.72 -0.55 1.23 16 3 N -0.26 -3.71 11.23 35.53 0.40 -3.31 16 4 N -0.42 -7.37 3.72 -10.84 -0.04 -7.41 16 5 C 0.36 6.00 7.59 -154.33 -1.17 4.83 16 6 C -0.13 -1.49 9.75 -39.01 -0.38 -1.87 16 7 C -0.05 -0.54 9.53 -39.24 -0.37 -0.91 16 8 C -0.07 -0.89 6.37 -82.39 -0.53 -1.41 16 9 C 0.54 6.14 3.44 36.01 0.12 6.26 16 10 F -0.17 -1.95 17.30 2.25 0.04 -1.91 16 11 F -0.16 -2.06 17.05 2.25 0.04 -2.02 16 12 F -0.17 -1.62 16.50 2.25 0.04 -1.59 16 13 N -0.15 -2.55 11.12 33.61 0.37 -2.18 16 14 N -0.24 -4.55 10.12 31.31 0.32 -4.23 16 15 C 0.50 10.53 7.53 -10.26 -0.08 10.45 16 16 O -0.40 -10.20 15.82 5.56 0.09 -10.11 16 17 C -0.12 -2.14 2.98 -92.08 -0.27 -2.41 16 18 H 0.14 2.28 8.14 -51.93 -0.42 1.86 16 19 C 0.02 0.37 3.57 -27.88 -0.10 0.27 16 20 C -0.53 -14.36 8.94 -34.44 -0.31 -14.67 16 21 H 0.08 2.56 7.48 -52.49 -0.39 2.16 16 22 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 23 N -0.89 -27.10 13.96 55.43 0.77 -26.33 16 24 Si 0.87 20.48 27.47 -169.99 -4.67 15.81 16 25 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.27 -5.99 6.54 56.52 0.37 -5.62 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.17 1.54 7.68 -52.48 -0.40 1.13 16 32 H 0.17 0.97 7.67 -52.49 -0.40 0.56 16 33 H 0.04 0.73 7.57 -51.93 -0.39 0.33 16 34 H 0.02 0.45 7.19 -51.93 -0.37 0.07 16 35 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 326.11 15.07 4.91 4.91 Total: -1.00 -34.75 326.11 -3.90 -38.66 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: -2.82 Total: -3.82 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: -3.35 Total: 3.51 kcal Atomic # 7 Polarization: -45.28 SS G_CDS: 1.82 Total: -43.45 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.11 Total: -5.51 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -34.75 -3.90 -38.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601944960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.233 kcal (2) G-P(sol) polarization free energy of solvation -34.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds