Wall clock time and date at job start Tue Mar 31 2020 15:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.27576 * 126.41567 * 2 1 4 4 N 1.39145 * 113.16457 * 180.02562 * 3 2 1 5 5 C 1.39553 * 124.43941 * 180.02562 * 4 3 2 6 6 C 1.39396 * 120.15132 * 359.97236 * 5 4 3 7 7 C 1.38621 * 117.91553 * 180.02562 * 6 5 4 8 8 C 1.38778 * 118.03146 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00055 * 179.97438 * 8 7 6 10 10 F 1.39907 * 109.46946 * 89.99755 * 9 8 7 11 11 F 1.39891 * 109.47318 * 210.00163 * 9 8 7 12 12 F 1.39902 * 109.47041 * 330.00135 * 9 8 7 13 13 N 1.31840 * 119.99746 * 359.97438 * 8 7 6 14 14 N 1.28347 * 122.27681 * 359.71279 * 13 8 7 15 15 C 1.35307 * 111.16397 * 0.09103 * 4 3 2 16 16 O 1.21280 * 127.68355 * 179.97438 * 15 4 3 17 17 C 1.51433 * 126.41764 * 180.02562 * 2 1 3 18 18 H 1.09002 * 110.60531 * 61.30032 * 17 2 1 19 19 C 1.52997 * 110.61087 * 298.48061 * 17 2 1 20 20 C 1.50701 * 109.47212 * 177.14901 * 19 17 2 21 21 H 1.07998 * 120.00129 * 0.02562 * 20 19 17 22 22 C 1.37880 * 119.99861 * 179.97438 * 20 19 17 23 23 N 1.31512 * 119.99594 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99875 * 0.02562 * 22 20 19 25 25 H 1.48504 * 109.47061 * 90.00257 * 24 22 20 26 26 H 1.48497 * 109.46906 * 209.99430 * 24 22 20 27 27 H 1.48498 * 109.47403 * 329.99876 * 24 22 20 28 28 H 1.09004 * 109.46721 * 269.95783 * 1 2 3 29 29 H 1.09002 * 109.47036 * 29.95187 * 1 2 3 30 30 H 1.09000 * 109.47083 * 149.95809 * 1 2 3 31 31 H 1.08005 * 121.04068 * 0.02562 * 6 5 4 32 32 H 1.08000 * 120.98520 * 179.97438 * 7 6 5 33 33 H 1.09002 * 109.47153 * 57.14902 * 19 17 2 34 34 H 1.09001 * 109.46832 * 297.15093 * 19 17 2 35 35 H 0.97002 * 119.99739 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2644 1.0266 0.0000 4 7 3.6188 0.7077 -0.0006 5 6 4.6508 1.6471 -0.0002 6 6 4.3572 3.0098 0.0003 7 6 5.4180 3.9022 0.0001 8 6 6.7056 3.3847 0.0000 9 6 7.8915 4.3147 -0.0007 10 9 8.2587 4.6031 1.3181 11 9 8.9631 3.7033 -0.6602 12 9 7.5534 5.5010 -0.6607 13 7 6.8915 2.0794 0.0007 14 7 5.9138 1.2480 0.0068 15 6 3.8050 -0.6325 -0.0030 16 8 4.8578 -1.2347 -0.0045 17 6 2.4060 -1.2186 -0.0005 18 1 2.2395 -1.8178 -0.8958 19 6 2.1763 -2.0580 1.2578 20 6 3.0310 -3.2977 1.1978 21 1 3.6742 -3.4695 0.3474 22 6 2.9927 -4.2120 2.2291 23 7 3.7391 -5.2936 2.1769 24 14 1.8808 -3.9145 3.7003 25 1 0.5492 -4.5201 3.4448 26 1 2.4824 -4.5335 4.9086 27 1 1.7269 -2.4535 3.9170 28 1 -0.3633 -0.0008 1.0277 29 1 -0.3633 0.8904 -0.5131 30 1 -0.3633 -0.8896 -0.5145 31 1 3.3353 3.3593 0.0007 32 1 5.2474 4.9686 0.0000 33 1 1.1260 -2.3434 1.3174 34 1 2.4446 -1.4739 2.1381 35 1 3.7119 -5.9371 2.9022 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601944960.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:09 Heat of formation + Delta-G solvation = -78.826455 kcal Electronic energy + Delta-G solvation = -27321.360498 eV Core-core repulsion = 22713.451855 eV Total energy + Delta-G solvation = -4607.908643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.089 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -51.34745 -48.85477 -48.82001 -43.12051 -42.06136 -38.84401 -36.63430 -35.11598 -34.83000 -33.22592 -32.54835 -29.70453 -28.67609 -27.69505 -26.26167 -24.53763 -23.93913 -21.97567 -21.19315 -20.04461 -19.81516 -19.73205 -19.52434 -18.70205 -18.31937 -17.74633 -16.57617 -16.51439 -16.24978 -15.86069 -15.77081 -15.73209 -15.57338 -15.25011 -15.18773 -14.95207 -14.92672 -14.76133 -14.63140 -14.51026 -14.07397 -13.86729 -13.63344 -13.34310 -13.23027 -12.92485 -12.73071 -12.44167 -12.00820 -11.77189 -11.71019 -11.63752 -11.56658 -11.23614 -10.81147 -10.63555 -9.86389 -8.27857 -6.35018 -0.85513 -0.57780 0.45447 0.56602 1.20126 1.26474 1.34646 1.40396 1.48900 2.08995 2.25725 2.35380 2.49635 2.63444 2.87689 3.02857 3.06438 3.14974 3.22192 3.46854 3.58962 3.75948 3.98170 4.07891 4.37691 4.43457 4.56205 4.73698 4.92449 4.95261 4.99525 5.07411 5.12032 5.43083 5.54687 6.22483 6.26069 6.52898 6.75733 7.16542 7.27862 8.89843 Molecular weight = 328.09amu Principal moments of inertia in cm(-1) A = 0.017436 B = 0.003241 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.528129 B = 8637.556308 C = 9514.856254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.162 3.838 3 N -0.254 5.254 4 N -0.425 5.425 5 C 0.332 3.668 6 C -0.106 4.106 7 C -0.031 4.031 8 C -0.065 4.065 9 C 0.547 3.453 10 F -0.167 7.167 11 F -0.172 7.172 12 F -0.152 7.152 13 N -0.194 5.194 14 N -0.295 5.295 15 C 0.489 3.511 16 O -0.474 6.474 17 C -0.126 4.126 18 H 0.146 0.854 19 C 0.024 3.976 20 C -0.532 4.532 21 H 0.028 0.972 22 C 0.001 3.999 23 N -0.953 5.953 24 Si 0.951 3.049 25 H -0.243 1.243 26 H -0.295 1.295 27 H -0.244 1.244 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.113 0.887 31 H 0.208 0.792 32 H 0.222 0.778 33 H 0.079 0.921 34 H 0.012 0.988 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.720 25.613 -4.775 27.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.030 4.030 3 N -0.061 5.061 4 N -0.236 5.236 5 C 0.097 3.903 6 C -0.137 4.137 7 C -0.059 4.059 8 C -0.216 4.216 9 C 0.490 3.510 10 F -0.149 7.149 11 F -0.153 7.153 12 F -0.133 7.133 13 N -0.036 5.036 14 N -0.144 5.144 15 C 0.276 3.724 16 O -0.340 6.340 17 C -0.150 4.150 18 H 0.163 0.837 19 C -0.014 4.014 20 C -0.570 4.570 21 H 0.047 0.953 22 C -0.195 4.195 23 N -0.593 5.593 24 Si 0.773 3.227 25 H -0.167 1.167 26 H -0.222 1.222 27 H -0.167 1.167 28 H 0.133 0.867 29 H 0.134 0.866 30 H 0.132 0.868 31 H 0.225 0.775 32 H 0.239 0.761 33 H 0.097 0.903 34 H 0.030 0.970 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.810 24.809 -4.702 26.152 hybrid contribution 0.213 -0.540 0.591 0.828 sum -6.597 24.269 -4.111 25.483 Atomic orbital electron populations 1.20851 0.79380 1.07111 1.06477 1.26484 0.99520 0.88359 0.88619 1.74765 0.84507 1.26201 1.20579 1.47404 1.03871 1.04868 1.67457 1.20280 0.87725 0.89888 0.92447 1.22399 1.04408 0.88339 0.98542 1.22561 0.88197 1.04850 0.90282 1.23046 0.96077 0.94191 1.08241 1.17194 0.80999 0.78448 0.74335 1.93262 1.92216 1.93702 1.35684 1.93242 1.58013 1.83059 1.80979 1.93248 1.92052 1.47330 1.80714 1.72934 1.23829 1.01402 1.05446 1.73395 0.96657 1.27969 1.16399 1.22389 0.93020 0.82148 0.74794 1.90816 1.33239 1.65655 1.44255 1.21898 0.89712 0.97753 1.05633 0.83719 1.19272 0.99381 0.92626 0.90117 1.21302 1.24613 1.04953 1.06106 0.95345 1.26089 0.97329 0.94330 1.01763 1.70107 1.42244 1.12466 1.34484 0.85665 0.79578 0.80034 0.77395 1.16721 1.22158 1.16740 0.86749 0.86600 0.86830 0.77511 0.76125 0.90315 0.97015 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.49 71.24 0.75 -0.08 16 2 C 0.16 3.73 6.93 46.83 0.32 4.06 16 3 N -0.25 -6.55 11.23 -40.85 -0.46 -7.00 16 4 N -0.42 -14.96 3.72 -306.29 -1.14 -16.10 16 5 C 0.33 11.05 7.59 132.92 1.01 12.06 16 6 C -0.11 -2.16 9.75 22.64 0.22 -1.94 16 7 C -0.03 -0.52 9.53 22.49 0.21 -0.30 16 8 C -0.06 -1.60 6.37 42.69 0.27 -1.33 16 9 C 0.55 11.58 3.44 71.24 0.25 11.82 16 10 F -0.17 -3.62 17.30 44.97 0.78 -2.84 16 11 F -0.17 -4.37 17.05 44.97 0.77 -3.60 16 12 F -0.15 -2.40 16.50 44.97 0.74 -1.66 16 13 N -0.19 -6.86 11.12 -47.57 -0.53 -7.39 16 14 N -0.30 -11.98 10.12 -54.85 -0.55 -12.53 16 15 C 0.49 21.49 7.53 87.89 0.66 22.15 16 16 O -0.47 -26.32 15.82 -3.03 -0.05 -26.36 16 17 C -0.13 -4.45 2.98 -11.74 -0.03 -4.49 16 18 H 0.15 4.85 8.14 -2.39 -0.02 4.83 16 19 C 0.02 1.02 3.57 29.85 0.11 1.13 16 20 C -0.53 -30.27 8.94 25.60 0.23 -30.04 16 21 H 0.03 1.88 7.48 -2.91 -0.02 1.86 16 22 C 0.00 0.09 5.47 84.66 0.46 0.55 16 23 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 24 Si 0.95 41.96 27.47 68.60 1.88 43.85 16 25 H -0.24 -9.56 7.11 99.48 0.71 -8.86 16 26 H -0.30 -13.44 7.11 99.48 0.71 -12.73 16 27 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 28 H 0.11 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.12 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.21 2.67 7.68 -2.91 -0.02 2.65 16 32 H 0.22 1.16 7.67 -2.91 -0.02 1.14 16 33 H 0.08 2.69 7.57 -2.39 -0.02 2.67 16 34 H 0.01 0.51 7.19 -2.39 -0.02 0.49 16 35 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -87.83 326.11 7.31 -80.51 By element: Atomic # 1 Polarization: -0.72 SS G_CDS: 1.11 Total: 0.39 kcal Atomic # 6 Polarization: 9.13 SS G_CDS: 4.46 Total: 13.59 kcal Atomic # 7 Polarization: -101.50 SS G_CDS: -2.38 Total: -103.88 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.05 Total: -26.36 kcal Atomic # 9 Polarization: -10.39 SS G_CDS: 2.29 Total: -8.10 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 1.88 Total: 43.85 kcal Total: -87.83 7.31 -80.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601944960.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.687 kcal (2) G-P(sol) polarization free energy of solvation -87.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds