Wall clock time and date at job start Tue Mar 31 2020 14:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00422 * 2 1 4 4 H 1.48500 * 109.46979 * 239.99796 * 3 2 1 5 5 H 1.48502 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47262 * 120.00180 * 3 2 1 7 7 C 1.37884 * 119.99334 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99577 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00295 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00017 * 171.44101 * 10 9 7 12 12 C 1.50695 * 109.46816 * 288.19015 * 11 10 9 13 13 C 1.38169 * 120.02926 * 266.05910 * 12 11 10 14 14 C 1.38339 * 120.08572 * 179.74990 * 13 12 11 15 15 Cl 1.73600 * 119.93749 * 180.27412 * 14 13 12 16 16 C 1.38416 * 120.12628 * 0.55053 * 14 13 12 17 17 C 1.38168 * 120.05125 * 359.70054 * 16 14 13 18 18 Cl 1.73604 * 120.04102 * 180.02562 * 17 16 14 19 19 C 1.38830 * 120.02429 * 86.33570 * 12 11 10 20 20 N 1.39810 * 120.06526 * 359.97438 * 19 12 11 21 21 C 1.46898 * 110.99635 * 295.39437 * 10 9 7 22 22 C 1.52996 * 109.47125 * 171.18863 * 21 10 9 23 23 C 1.53007 * 117.50207 * 116.97269 * 22 21 10 24 24 C 1.53003 * 117.50033 * 185.63024 * 22 21 10 25 25 H 0.97001 * 119.99381 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47173 * 59.99621 * 9 7 2 27 27 H 1.09000 * 109.46902 * 299.99918 * 9 7 2 28 28 H 1.08994 * 109.47342 * 48.18861 * 11 10 9 29 29 H 1.09000 * 109.46887 * 168.19557 * 11 10 9 30 30 H 1.07999 * 119.95526 * 359.97438 * 13 12 11 31 31 H 1.08000 * 119.97082 * 179.72635 * 16 14 13 32 32 H 0.97005 * 120.00075 * 0.02562 * 20 19 12 33 33 H 0.97002 * 120.00321 * 179.97438 * 20 19 12 34 34 H 1.08994 * 109.47738 * 51.18515 * 21 10 9 35 35 H 1.09007 * 109.47274 * 291.18799 * 21 10 9 36 36 H 1.09005 * 115.55164 * 331.30144 * 22 21 10 37 37 H 1.08994 * 117.49716 * 215.00541 * 23 22 21 38 38 H 1.08996 * 117.49712 * 0.02562 * 23 22 21 39 39 H 1.08998 * 117.49651 * 359.97438 * 24 22 21 40 40 H 1.08999 * 117.49809 * 144.99641 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 7 2.2054 -3.6159 -0.0015 11 6 1.5164 -4.8973 0.2015 12 6 1.0440 -4.9929 1.6293 13 6 1.8305 -5.6186 2.5775 14 6 1.4003 -5.7024 3.8896 15 17 2.3948 -6.4832 5.0792 16 6 0.1758 -5.1701 4.2546 17 6 -0.6174 -4.5478 3.3099 18 17 -2.1528 -3.8796 3.7681 19 6 -0.1845 -4.4574 1.9919 20 7 -0.9847 -3.8283 1.0334 21 6 2.9954 -3.6333 -1.2398 22 6 4.1192 -4.6638 -1.1133 23 6 4.0998 -5.8522 -2.0769 24 6 5.1381 -4.7412 -2.2521 25 1 -0.4849 0.8401 0.0004 26 1 0.6245 -2.5563 -0.8919 27 1 0.6239 -2.5575 0.8880 28 1 0.6598 -4.9596 -0.4695 29 1 2.2036 -5.7167 -0.0094 30 1 2.7840 -6.0396 2.2946 31 1 -0.1595 -5.2409 5.2788 32 1 -0.6819 -3.7661 0.1139 33 1 -1.8431 -3.4548 1.2876 34 1 3.4250 -2.6463 -1.4106 35 1 2.3513 -3.8991 -2.0781 36 1 4.4814 -4.8426 -0.1009 37 1 4.4490 -6.8127 -1.6983 38 1 3.2866 -5.8996 -2.8011 39 1 5.0076 -4.0583 -3.0915 40 1 6.1706 -4.9710 -1.9888 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602465985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:26 Heat of formation + Delta-G solvation = 42.761379 kcal Electronic energy + Delta-G solvation = -23750.139520 eV Core-core repulsion = 20231.176720 eV Total energy + Delta-G solvation = -3518.962800 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.77497 -37.80748 -36.51468 -36.26937 -35.32929 -33.94203 -32.64886 -31.11055 -28.44079 -27.41405 -26.60556 -24.06080 -22.46865 -22.13435 -21.64761 -20.49065 -19.61006 -17.31709 -17.09901 -16.30640 -15.95725 -15.46487 -14.92271 -14.39581 -14.31881 -14.25984 -14.00284 -13.83242 -13.31121 -13.14428 -12.50637 -12.20099 -12.07635 -11.88809 -11.75207 -11.51822 -11.34339 -11.23470 -11.20099 -10.90010 -10.76933 -10.68445 -10.64138 -10.49605 -10.17103 -9.97019 -9.67563 -9.56018 -9.15763 -8.53812 -8.43485 -7.35506 -7.15074 -6.07038 -4.06577 1.38273 1.58612 2.17390 2.63106 3.30939 3.35397 3.38771 3.76815 4.06038 4.16720 4.40579 4.76154 4.90450 5.13598 5.19212 5.23580 5.29814 5.33717 5.41167 5.49490 5.73116 5.77352 5.81381 5.87695 6.03422 6.08335 6.12025 6.21889 6.27913 6.31424 6.44559 6.60085 6.74902 6.78523 7.16044 7.25515 7.66683 7.74796 8.00706 8.07627 8.12975 8.48849 8.98914 9.57045 11.03317 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.008108 B = 0.005357 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.591963 B = 5225.697749 C = 7281.504315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.277 1.277 7 C -0.508 4.508 8 H 0.062 0.938 9 C 0.176 3.824 10 N -0.528 5.528 11 C 0.100 3.900 12 C -0.121 4.121 13 C -0.037 4.037 14 C -0.091 4.091 15 Cl -0.083 7.083 16 C -0.056 4.056 17 C -0.111 4.111 18 Cl -0.071 7.071 19 C 0.258 3.742 20 N -0.848 5.848 21 C 0.092 3.908 22 C -0.137 4.137 23 C -0.191 4.191 24 C -0.182 4.182 25 H 0.260 0.740 26 H -0.016 1.016 27 H 0.059 0.941 28 H 0.028 0.972 29 H 0.080 0.920 30 H 0.133 0.867 31 H 0.135 0.865 32 H 0.409 0.591 33 H 0.400 0.600 34 H 0.091 0.909 35 H 0.021 0.979 36 H 0.109 0.891 37 H 0.087 0.913 38 H 0.088 0.912 39 H 0.091 0.909 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.769 -13.114 2.599 13.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.723 3.277 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.547 4.547 8 H 0.080 0.920 9 C 0.051 3.949 10 N -0.252 5.252 11 C -0.028 4.028 12 C -0.127 4.127 13 C -0.057 4.057 14 C -0.120 4.120 15 Cl -0.054 7.054 16 C -0.077 4.077 17 C -0.143 4.143 18 Cl -0.042 7.042 19 C 0.147 3.853 20 N -0.388 5.388 21 C -0.036 4.036 22 C -0.156 4.156 23 C -0.228 4.228 24 C -0.220 4.220 25 H 0.070 0.930 26 H 0.002 0.998 27 H 0.077 0.923 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.242 0.758 33 H 0.230 0.770 34 H 0.109 0.891 35 H 0.039 0.961 36 H 0.127 0.873 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.109 0.891 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.859 -12.903 3.095 13.297 hybrid contribution -0.378 1.172 -0.721 1.427 sum 0.481 -11.731 2.374 11.979 Atomic orbital electron populations 1.69913 1.05890 1.26768 1.50911 1.24923 0.94870 0.99101 0.95423 0.86615 0.79517 0.82971 0.78639 1.20366 1.21434 1.20207 1.21097 0.93441 0.89935 1.50188 0.92004 1.20197 0.90542 0.87445 0.96732 1.62200 1.26529 1.01800 1.34660 1.20823 0.96836 0.94809 0.90381 1.19140 0.93023 1.03380 0.97176 1.20640 0.98693 0.96401 0.89993 1.20216 0.94228 1.07135 0.90438 1.98324 1.69649 1.79892 1.57575 1.20474 0.92063 0.96135 0.98984 1.19982 0.91338 1.10070 0.92950 1.98328 1.28801 1.84850 1.92232 1.17367 0.90329 0.90012 0.87555 1.43122 1.22292 1.62446 1.10903 1.21599 0.92791 0.98744 0.90452 1.22480 0.99440 0.98208 0.95469 1.23051 1.02171 0.93764 1.03848 1.22905 0.95283 1.02255 1.01532 0.92994 0.99821 0.92350 0.95409 0.90209 0.84878 0.84713 0.75750 0.76995 0.89080 0.96121 0.87309 0.89415 0.89330 0.89062 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.08 13.29 55.43 0.74 -24.35 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.51 -13.56 8.38 -34.44 -0.29 -13.84 16 8 H 0.06 1.66 7.06 -52.48 -0.37 1.29 16 9 C 0.18 4.13 3.28 -4.98 -0.02 4.11 16 10 N -0.53 -10.27 4.46 -237.53 -1.06 -11.33 16 11 C 0.10 1.62 4.82 -4.98 -0.02 1.60 16 12 C -0.12 -1.98 5.16 -104.43 -0.54 -2.52 16 13 C -0.04 -0.56 9.46 -39.57 -0.37 -0.93 16 14 C -0.09 -1.33 6.32 -39.48 -0.25 -1.57 16 15 Cl -0.08 -1.07 28.95 -51.86 -1.50 -2.58 16 16 C -0.06 -0.82 9.61 -39.54 -0.38 -1.20 16 17 C -0.11 -1.76 6.34 -39.32 -0.25 -2.01 16 18 Cl -0.07 -1.03 27.59 -51.86 -1.43 -2.47 16 19 C 0.26 4.33 5.74 -83.71 -0.48 3.85 16 20 N -0.85 -14.14 7.34 32.44 0.24 -13.90 16 21 C 0.09 1.64 5.08 -3.83 -0.02 1.62 16 22 C -0.14 -1.99 4.59 -90.62 -0.42 -2.40 16 23 C -0.19 -2.31 10.03 -26.69 -0.27 -2.58 16 24 C -0.18 -2.28 10.25 -26.69 -0.27 -2.55 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H -0.02 -0.39 7.63 -51.93 -0.40 -0.79 16 27 H 0.06 1.43 4.65 -51.93 -0.24 1.19 16 28 H 0.03 0.45 6.67 -51.93 -0.35 0.10 16 29 H 0.08 1.15 6.64 -51.93 -0.34 0.80 16 30 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 31 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 32 H 0.41 7.08 4.95 -40.82 -0.20 6.88 16 33 H 0.40 6.37 7.51 -40.82 -0.31 6.06 16 34 H 0.09 1.84 6.56 -51.93 -0.34 1.50 16 35 H 0.02 0.36 7.86 -51.93 -0.41 -0.04 16 36 H 0.11 1.62 8.14 -51.93 -0.42 1.20 16 37 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 38 H 0.09 1.06 8.03 -51.93 -0.42 0.64 16 39 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 351.55 15.07 5.30 5.30 Total: -1.00 -27.27 351.55 -11.46 -38.73 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -5.04 Total: 11.27 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: -3.68 Total: -16.95 kcal Atomic # 7 Polarization: -49.49 SS G_CDS: -0.09 Total: -49.57 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 17 Polarization: -2.11 SS G_CDS: -2.93 Total: -5.04 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -27.27 -11.46 -38.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602465985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.491 kcal (2) G-P(sol) polarization free energy of solvation -27.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds