Wall clock time and date at job start Tue Mar 31 2020 14:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00422 * 2 1 4 4 H 1.48500 * 109.46979 * 239.99796 * 3 2 1 5 5 H 1.48502 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47262 * 120.00180 * 3 2 1 7 7 C 1.37884 * 119.99334 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99577 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00295 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.47226 * 180.02562 * 9 7 2 11 11 C 1.46901 * 111.00017 * 171.44101 * 10 9 7 12 12 C 1.50695 * 109.46816 * 288.19015 * 11 10 9 13 13 C 1.38169 * 120.02926 * 266.05910 * 12 11 10 14 14 C 1.38339 * 120.08572 * 179.74990 * 13 12 11 15 15 Cl 1.73600 * 119.93749 * 180.27412 * 14 13 12 16 16 C 1.38416 * 120.12628 * 0.55053 * 14 13 12 17 17 C 1.38168 * 120.05125 * 359.70054 * 16 14 13 18 18 Cl 1.73604 * 120.04102 * 180.02562 * 17 16 14 19 19 C 1.38830 * 120.02429 * 86.33570 * 12 11 10 20 20 N 1.39810 * 120.06526 * 359.97438 * 19 12 11 21 21 C 1.46898 * 110.99635 * 295.39437 * 10 9 7 22 22 C 1.52996 * 109.47125 * 171.18863 * 21 10 9 23 23 C 1.53007 * 117.50207 * 116.97269 * 22 21 10 24 24 C 1.53003 * 117.50033 * 185.63024 * 22 21 10 25 25 H 0.97001 * 119.99381 * 359.97438 * 1 2 3 26 26 H 1.08991 * 109.47173 * 59.99621 * 9 7 2 27 27 H 1.09000 * 109.46902 * 299.99918 * 9 7 2 28 28 H 1.08994 * 109.47342 * 48.18861 * 11 10 9 29 29 H 1.09000 * 109.46887 * 168.19557 * 11 10 9 30 30 H 1.07999 * 119.95526 * 359.97438 * 13 12 11 31 31 H 1.08000 * 119.97082 * 179.72635 * 16 14 13 32 32 H 0.97005 * 120.00075 * 0.02562 * 20 19 12 33 33 H 0.97002 * 120.00321 * 179.97438 * 20 19 12 34 34 H 1.08994 * 109.47738 * 51.18515 * 21 10 9 35 35 H 1.09007 * 109.47274 * 291.18799 * 21 10 9 36 36 H 1.09005 * 115.55164 * 331.30144 * 22 21 10 37 37 H 1.08994 * 117.49716 * 215.00541 * 23 22 21 38 38 H 1.08996 * 117.49712 * 0.02562 * 23 22 21 39 39 H 1.08998 * 117.49651 * 359.97438 * 24 22 21 40 40 H 1.08999 * 117.49809 * 144.99641 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0044 -1.1942 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2508 -2.4992 -0.0017 10 7 2.2054 -3.6159 -0.0015 11 6 1.5164 -4.8973 0.2015 12 6 1.0440 -4.9929 1.6293 13 6 1.8305 -5.6186 2.5775 14 6 1.4003 -5.7024 3.8896 15 17 2.3948 -6.4832 5.0792 16 6 0.1758 -5.1701 4.2546 17 6 -0.6174 -4.5478 3.3099 18 17 -2.1528 -3.8796 3.7681 19 6 -0.1845 -4.4574 1.9919 20 7 -0.9847 -3.8283 1.0334 21 6 2.9954 -3.6333 -1.2398 22 6 4.1192 -4.6638 -1.1133 23 6 4.0998 -5.8522 -2.0769 24 6 5.1381 -4.7412 -2.2521 25 1 -0.4849 0.8401 0.0004 26 1 0.6245 -2.5563 -0.8919 27 1 0.6239 -2.5575 0.8880 28 1 0.6598 -4.9596 -0.4695 29 1 2.2036 -5.7167 -0.0094 30 1 2.7840 -6.0396 2.2946 31 1 -0.1595 -5.2409 5.2788 32 1 -0.6819 -3.7661 0.1139 33 1 -1.8431 -3.4548 1.2876 34 1 3.4250 -2.6463 -1.4106 35 1 2.3513 -3.8991 -2.0781 36 1 4.4814 -4.8426 -0.1009 37 1 4.4490 -6.8127 -1.6983 38 1 3.2866 -5.8996 -2.8011 39 1 5.0076 -4.0583 -3.0915 40 1 6.1706 -4.9710 -1.9888 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602465985.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:25 Heat of formation + Delta-G solvation = 28.795375 kcal Electronic energy + Delta-G solvation = -23750.745131 eV Core-core repulsion = 20231.176720 eV Total energy + Delta-G solvation = -3519.568411 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.02915 -39.06441 -37.64370 -37.44839 -36.63475 -35.20281 -34.59544 -32.44237 -29.78295 -29.10943 -27.93208 -25.72748 -23.76443 -23.16239 -23.03521 -21.78527 -20.93087 -18.88201 -18.33696 -17.94381 -17.21809 -16.78381 -16.63402 -15.85860 -15.59257 -15.45144 -15.31725 -15.21146 -14.62752 -14.42787 -14.04065 -13.64423 -13.45551 -13.29621 -13.19449 -12.94940 -12.66607 -12.62552 -12.46639 -12.42327 -12.27429 -12.08761 -11.89029 -11.76072 -11.67585 -11.35991 -11.08123 -10.90743 -10.68894 -10.45166 -9.74342 -8.93345 -8.42027 -8.14106 -6.20008 0.17869 0.37840 1.00606 1.40103 1.41900 1.46904 1.48762 2.41492 2.54451 2.90075 3.00849 3.18508 3.42800 3.69228 4.04253 4.05075 4.14613 4.16780 4.21246 4.26712 4.46951 4.55187 4.67341 4.81732 4.85119 4.88680 4.92517 5.00248 5.11244 5.13782 5.23331 5.34903 5.39151 5.46980 5.50606 5.59788 5.70388 6.14997 6.36483 6.45431 6.69833 6.75537 6.93867 7.46938 8.94090 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.008108 B = 0.005357 C = 0.003844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3452.591963 B = 5225.697749 C = 7281.504315 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.011 3.989 3 Si 0.951 3.049 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.053 0.947 9 C 0.193 3.807 10 N -0.534 5.534 11 C 0.105 3.895 12 C -0.137 4.137 13 C -0.035 4.035 14 C -0.093 4.093 15 Cl -0.065 7.065 16 C -0.055 4.055 17 C -0.122 4.122 18 Cl -0.065 7.065 19 C 0.240 3.760 20 N -0.852 5.852 21 C 0.097 3.903 22 C -0.154 4.154 23 C -0.171 4.171 24 C -0.176 4.176 25 H 0.260 0.740 26 H -0.040 1.040 27 H 0.050 0.950 28 H 0.027 0.973 29 H 0.103 0.897 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.403 0.597 33 H 0.401 0.599 34 H 0.059 0.941 35 H 0.017 0.983 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 -14.408 3.080 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.188 4.188 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.071 0.929 9 C 0.067 3.933 10 N -0.258 5.258 11 C -0.022 4.022 12 C -0.143 4.143 13 C -0.055 4.055 14 C -0.122 4.122 15 Cl -0.037 7.037 16 C -0.075 4.075 17 C -0.154 4.154 18 Cl -0.037 7.037 19 C 0.130 3.870 20 N -0.391 5.391 21 C -0.031 4.031 22 C -0.172 4.172 23 C -0.208 4.208 24 C -0.214 4.214 25 H 0.069 0.931 26 H -0.022 1.022 27 H 0.067 0.933 28 H 0.045 0.955 29 H 0.121 0.879 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.236 0.764 33 H 0.231 0.769 34 H 0.077 0.923 35 H 0.035 0.965 36 H 0.125 0.875 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.106 0.894 40 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.276 -14.218 3.583 14.838 hybrid contribution -0.794 1.514 -0.831 1.901 sum 1.482 -12.704 2.752 13.083 Atomic orbital electron populations 1.70018 1.06942 1.27295 1.51757 1.25641 0.95680 1.02108 0.95356 0.85716 0.78419 0.79443 0.78690 1.19623 1.21092 1.20142 1.21442 0.93304 0.91663 1.49702 0.92856 1.19850 0.90468 0.87961 0.95068 1.62111 1.25908 1.02209 1.35545 1.20831 0.97073 0.93645 0.90661 1.19233 0.93293 1.04321 0.97453 1.20836 0.99022 0.95747 0.89926 1.20319 0.94346 1.06735 0.90765 1.98331 1.69084 1.79472 1.56779 1.20714 0.91893 0.95294 0.99597 1.20143 0.91912 1.10440 0.92924 1.98324 1.28415 1.84817 1.92102 1.17609 0.90813 0.90577 0.88017 1.43069 1.22442 1.62884 1.10694 1.21494 0.93515 0.98404 0.89706 1.22236 0.99462 0.99215 0.96319 1.23119 1.01692 0.93866 1.02106 1.23001 0.96029 1.02235 1.00096 0.93109 1.02208 0.93273 0.95511 0.87881 0.83163 0.82905 0.76433 0.76937 0.92275 0.96455 0.87460 0.87191 0.89234 0.89420 0.87486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.50 13.29 21.45 0.28 -52.21 16 2 C 0.01 0.61 5.46 84.66 0.46 1.07 16 3 Si 0.95 44.03 29.54 68.60 2.03 46.06 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -12.97 7.11 99.48 0.71 -12.27 16 6 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 7 C -0.52 -28.52 8.38 25.60 0.21 -28.31 16 8 H 0.05 2.93 7.06 -2.91 -0.02 2.91 16 9 C 0.19 9.31 3.28 85.56 0.28 9.59 16 10 N -0.53 -20.96 4.46 -905.40 -4.04 -25.01 16 11 C 0.11 3.38 4.82 85.56 0.41 3.79 16 12 C -0.14 -4.40 5.16 -19.74 -0.10 -4.50 16 13 C -0.04 -1.00 9.46 22.28 0.21 -0.79 16 14 C -0.09 -2.52 6.32 22.34 0.14 -2.38 16 15 Cl -0.07 -1.54 28.95 -2.72 -0.08 -1.62 16 16 C -0.06 -1.53 9.61 22.30 0.21 -1.31 16 17 C -0.12 -3.80 6.34 22.44 0.14 -3.66 16 18 Cl -0.07 -1.89 27.59 -2.72 -0.08 -1.96 16 19 C 0.24 8.06 5.74 38.20 0.22 8.28 16 20 N -0.85 -29.24 7.34 -51.27 -0.38 -29.61 16 21 C 0.10 3.48 5.08 86.30 0.44 3.92 16 22 C -0.15 -4.23 4.59 -10.79 -0.05 -4.28 16 23 C -0.17 -3.65 10.03 30.62 0.31 -3.34 16 24 C -0.18 -4.03 10.25 30.62 0.31 -3.71 16 25 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 26 H -0.04 -2.06 7.63 -2.39 -0.02 -2.08 16 27 H 0.05 2.49 4.65 -2.39 -0.01 2.47 16 28 H 0.03 0.87 6.67 -2.39 -0.02 0.85 16 29 H 0.10 2.78 6.64 -2.39 -0.02 2.77 16 30 H 0.15 3.65 8.06 -2.91 -0.02 3.62 16 31 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 32 H 0.40 14.58 4.95 -92.70 -0.46 14.12 16 33 H 0.40 13.20 7.51 -92.71 -0.70 12.51 16 34 H 0.06 2.47 6.56 -2.39 -0.02 2.45 16 35 H 0.02 0.62 7.86 -2.38 -0.02 0.60 16 36 H 0.11 3.01 8.14 -2.38 -0.02 2.99 16 37 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.09 1.92 8.03 -2.39 -0.02 1.91 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 Total: -1.00 -58.32 351.55 0.88 -57.44 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -0.06 Total: 32.54 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 3.21 Total: -25.63 kcal Atomic # 7 Polarization: -102.70 SS G_CDS: -4.13 Total: -106.84 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 17 Polarization: -3.42 SS G_CDS: -0.15 Total: -3.58 kcal Total: -58.32 0.88 -57.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602465985.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.240 kcal (2) G-P(sol) polarization free energy of solvation -58.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.445 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds