Wall clock time and date at job start Tue Mar 31 2020 14:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48505 * 109.47065 * 269.99916 * 3 2 1 5 5 H 1.48501 * 109.47427 * 29.99330 * 3 2 1 6 6 H 1.48496 * 109.47409 * 149.99951 * 3 2 1 7 7 C 1.38813 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00129 * 163.36133 * 7 2 1 9 9 N 1.36938 * 119.99704 * 343.37139 * 7 2 1 10 10 C 1.46499 * 119.99864 * 319.25001 * 9 7 2 11 11 C 1.50709 * 109.46973 * 264.18214 * 10 9 7 12 12 C 1.38166 * 120.02019 * 260.67045 * 11 10 9 13 13 C 1.38352 * 120.07460 * 179.74827 * 12 11 10 14 14 Cl 1.73601 * 119.93130 * 180.27311 * 13 12 11 15 15 C 1.38406 * 120.13207 * 0.55262 * 13 12 11 16 16 C 1.38171 * 120.04634 * 359.69468 * 15 13 12 17 17 Cl 1.73605 * 120.03923 * 180.02562 * 16 15 13 18 18 C 1.38822 * 120.02364 * 80.94226 * 11 10 9 19 19 N 1.39812 * 120.06423 * 0.02562 * 18 11 10 20 20 C 1.46504 * 119.99818 * 139.25533 * 9 7 2 21 21 C 1.55235 * 110.58116 * 55.55041 * 20 9 7 22 22 C 1.54893 * 102.58334 * 203.33826 * 21 20 9 23 23 C 1.54257 * 104.31580 * 37.93155 * 22 21 20 24 24 C 1.53874 * 106.60103 * 336.32455 * 23 22 21 25 25 H 0.97004 * 120.00119 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47212 * 24.17901 * 10 9 7 27 27 H 1.09000 * 109.46778 * 144.18392 * 10 9 7 28 28 H 1.07999 * 119.96265 * 359.97438 * 12 11 10 29 29 H 1.07996 * 119.97542 * 179.72897 * 15 13 12 30 30 H 0.96997 * 120.00807 * 7.25647 * 19 18 11 31 31 H 0.97008 * 119.99954 * 187.26649 * 19 18 11 32 32 H 1.08998 * 110.43282 * 178.13291 * 20 9 7 33 33 H 1.08993 * 110.90102 * 85.05035 * 21 20 9 34 34 H 1.08996 * 110.76549 * 321.56528 * 21 20 9 35 35 H 1.09000 * 110.48858 * 279.18298 * 22 21 20 36 36 H 1.09003 * 110.48345 * 156.67601 * 22 21 20 37 37 H 1.09006 * 110.03054 * 95.60748 * 23 22 21 38 38 H 1.09003 * 110.03725 * 216.99145 * 23 22 21 39 39 H 1.08996 * 110.03862 * 119.28207 * 24 23 22 40 40 H 1.09004 * 110.03514 * 240.67070 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0563 -1.2218 -0.2673 9 7 1.3685 -2.3631 0.3404 10 6 0.4155 -2.3745 1.4530 11 6 1.1127 -2.8362 2.7069 12 6 0.9838 -4.1460 3.1271 13 6 1.6275 -4.5724 4.2752 14 17 1.4687 -6.2208 4.7959 15 6 2.3931 -3.6858 5.0124 16 6 2.5215 -2.3734 4.5997 17 17 3.4824 -1.2618 5.5243 18 6 1.8802 -1.9442 3.4434 19 7 2.0072 -0.6167 3.0236 20 6 1.6351 -3.5937 -0.4085 21 6 3.1538 -3.9150 -0.4075 22 6 3.3118 -4.8023 -1.6672 23 6 2.3546 -4.1725 -2.7000 24 6 1.2885 -3.4040 -1.8997 25 1 -0.4850 0.8401 -0.0004 26 1 0.0224 -1.3693 1.6051 27 1 -0.4045 -3.0544 1.2220 28 1 0.3828 -4.8388 2.5568 29 1 2.8910 -4.0202 5.9105 30 1 1.4773 -0.2904 2.2795 31 1 2.6253 -0.0218 3.4764 32 1 1.0693 -4.4251 0.0119 33 1 3.4342 -4.4655 0.4904 34 1 3.7420 -3.0022 -0.5018 35 1 3.0169 -5.8290 -1.4501 36 1 4.3392 -4.7702 -2.0300 37 1 2.9020 -3.4870 -3.3469 38 1 1.8835 -4.9532 -3.2972 39 1 1.3184 -2.3455 -2.1582 40 1 0.2992 -3.8113 -2.1085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602478266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:43 Heat of formation + Delta-G solvation = 13.987806 kcal Electronic energy + Delta-G solvation = -24481.466362 eV Core-core repulsion = 20961.255846 eV Total energy + Delta-G solvation = -3520.210516 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.33995 -37.62395 -36.36951 -36.03746 -34.62217 -33.53778 -31.72764 -30.36696 -28.08732 -27.87677 -26.78381 -25.65222 -23.03087 -21.95958 -20.57283 -19.85791 -19.16872 -17.02766 -16.75812 -16.33329 -15.68896 -15.34143 -14.89021 -14.32238 -14.09907 -14.00676 -13.78289 -13.28980 -13.08230 -12.78528 -12.55150 -12.35521 -12.04221 -11.47158 -11.36616 -11.27499 -11.10192 -10.96494 -10.91797 -10.61805 -10.59154 -10.49851 -10.40377 -10.27597 -10.21150 -10.05701 -9.75537 -9.72229 -9.50379 -8.68925 -8.32203 -6.93078 -6.66954 -6.01150 -3.58981 1.60056 1.81009 2.30423 2.77213 3.15484 3.26817 3.29286 4.02698 4.27495 4.49179 5.04129 5.18376 5.27338 5.40554 5.42479 5.46295 5.69278 5.71982 5.83402 6.15001 6.19361 6.21628 6.24705 6.31472 6.35720 6.38152 6.49494 6.56678 6.59554 6.62522 6.81705 6.92935 7.02646 7.06492 7.11766 7.30486 7.38421 7.67131 8.00552 8.36459 8.44384 8.99848 9.58608 10.21864 10.98790 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009636 B = 0.006218 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.028228 B = 4501.677979 C = 6451.436715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.004 3.996 3 Si 0.875 3.125 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.235 4.235 8 H 0.062 0.938 9 N -0.568 5.568 10 C 0.186 3.814 11 C -0.134 4.134 12 C -0.061 4.061 13 C -0.091 4.091 14 Cl -0.091 7.091 15 C -0.068 4.068 16 C -0.121 4.121 17 Cl -0.084 7.084 18 C 0.263 3.737 19 N -0.851 5.851 20 C 0.175 3.825 21 C -0.133 4.133 22 C -0.123 4.123 23 C -0.120 4.120 24 C -0.132 4.132 25 H 0.258 0.742 26 H 0.101 0.899 27 H 0.041 0.959 28 H 0.127 0.873 29 H 0.129 0.871 30 H 0.420 0.580 31 H 0.389 0.611 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.082 0.918 40 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.692 -6.332 5.431 8.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.195 4.195 3 Si 0.704 3.296 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.366 4.366 8 H 0.079 0.921 9 N -0.285 5.285 10 C 0.059 3.941 11 C -0.142 4.142 12 C -0.081 4.081 13 C -0.120 4.120 14 Cl -0.063 7.063 15 C -0.088 4.088 16 C -0.153 4.153 17 Cl -0.055 7.055 18 C 0.152 3.848 19 N -0.391 5.391 20 C 0.068 3.932 21 C -0.172 4.172 22 C -0.161 4.161 23 C -0.158 4.158 24 C -0.171 4.171 25 H 0.068 0.932 26 H 0.118 0.882 27 H 0.059 0.941 28 H 0.145 0.855 29 H 0.147 0.853 30 H 0.257 0.743 31 H 0.217 0.783 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.101 0.899 40 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.584 -6.169 5.482 8.648 hybrid contribution 0.736 1.169 0.009 1.381 sum 3.320 -5.000 5.491 8.134 Atomic orbital electron populations 1.69972 1.05088 1.25952 1.51850 1.25285 0.95138 0.98453 1.00656 0.86735 0.79942 0.84201 0.78771 1.20745 1.21105 1.19814 1.18959 0.92487 0.84273 1.40883 0.92057 1.43790 1.49467 1.05224 1.30015 1.19845 0.89936 1.02299 0.81970 1.20796 1.02385 0.91946 0.99107 1.20746 0.97974 0.95372 0.94051 1.20266 1.06995 0.85297 0.99416 1.98309 1.97334 1.19904 1.90749 1.20332 0.98444 0.90476 0.99557 1.20058 1.06628 0.91699 0.96919 1.98300 1.71149 1.62868 1.73196 1.17395 0.91708 0.86321 0.89388 1.43199 1.47884 1.08242 1.39768 1.21292 0.92755 0.88642 0.90549 1.22896 0.99761 0.98937 0.95609 1.22276 0.98404 0.98626 0.96757 1.22064 0.97463 0.98652 0.97616 1.22525 0.96217 1.01659 0.96726 0.93163 0.88171 0.94098 0.85496 0.85273 0.74273 0.78297 0.92989 0.93120 0.91019 0.92703 0.93013 0.92812 0.93368 0.89927 0.93760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.09 11.49 55.49 0.64 -21.45 16 2 C 0.00 0.10 3.28 -17.43 -0.06 0.05 16 3 Si 0.88 19.09 29.11 -169.99 -4.95 14.15 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 7 C -0.24 -5.48 6.97 -15.06 -0.10 -5.58 16 8 H 0.06 1.50 6.50 -52.49 -0.34 1.16 16 9 N -0.57 -12.13 2.43 -164.92 -0.40 -12.53 16 10 C 0.19 3.84 4.85 -5.19 -0.03 3.81 16 11 C -0.13 -2.50 5.47 -104.43 -0.57 -3.07 16 12 C -0.06 -1.01 9.45 -39.57 -0.37 -1.38 16 13 C -0.09 -1.43 6.32 -39.48 -0.25 -1.67 16 14 Cl -0.09 -1.27 28.95 -51.86 -1.50 -2.77 16 15 C -0.07 -1.05 9.61 -39.54 -0.38 -1.43 16 16 C -0.12 -2.01 6.34 -39.32 -0.25 -2.26 16 17 Cl -0.08 -1.25 27.61 -51.86 -1.43 -2.68 16 18 C 0.26 4.86 6.73 -83.71 -0.56 4.30 16 19 N -0.85 -16.02 8.60 32.44 0.28 -15.74 16 20 C 0.17 3.36 3.38 -66.08 -0.22 3.14 16 21 C -0.13 -2.38 6.44 -24.55 -0.16 -2.54 16 22 C -0.12 -1.88 6.82 -25.07 -0.17 -2.05 16 23 C -0.12 -1.91 6.80 -25.62 -0.17 -2.08 16 24 C -0.13 -2.48 6.42 -25.61 -0.16 -2.65 16 25 H 0.26 6.34 8.31 -40.82 -0.34 6.00 16 26 H 0.10 2.30 4.61 -51.93 -0.24 2.06 16 27 H 0.04 0.82 7.95 -51.93 -0.41 0.41 16 28 H 0.13 1.97 8.04 -52.49 -0.42 1.54 16 29 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 30 H 0.42 8.66 3.71 -40.82 -0.15 8.51 16 31 H 0.39 6.72 7.54 -40.82 -0.31 6.41 16 32 H 0.05 0.97 7.94 -51.93 -0.41 0.55 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 1.42 6.41 -51.93 -0.33 1.09 16 35 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.08 1.82 7.10 -51.93 -0.37 1.45 16 40 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 343.41 15.07 5.18 5.18 Total: -1.00 -23.07 343.41 -10.74 -33.81 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -5.08 Total: 15.48 kcal Atomic # 6 Polarization: -9.97 SS G_CDS: -3.47 Total: -13.44 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.52 Total: -49.73 kcal Atomic # 14 Polarization: 19.09 SS G_CDS: -4.95 Total: 14.15 kcal Atomic # 17 Polarization: -2.52 SS G_CDS: -2.93 Total: -5.45 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -23.07 -10.74 -33.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602478266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.799 kcal (2) G-P(sol) polarization free energy of solvation -23.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.811 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds