Wall clock time and date at job start Tue Mar 31 2020 14:48:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86799 * 120.00064 * 2 1 4 4 H 1.48505 * 109.47065 * 269.99916 * 3 2 1 5 5 H 1.48501 * 109.47427 * 29.99330 * 3 2 1 6 6 H 1.48496 * 109.47409 * 149.99951 * 3 2 1 7 7 C 1.38813 * 120.00246 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00129 * 163.36133 * 7 2 1 9 9 N 1.36938 * 119.99704 * 343.37139 * 7 2 1 10 10 C 1.46499 * 119.99864 * 319.25001 * 9 7 2 11 11 C 1.50709 * 109.46973 * 264.18214 * 10 9 7 12 12 C 1.38166 * 120.02019 * 260.67045 * 11 10 9 13 13 C 1.38352 * 120.07460 * 179.74827 * 12 11 10 14 14 Cl 1.73601 * 119.93130 * 180.27311 * 13 12 11 15 15 C 1.38406 * 120.13207 * 0.55262 * 13 12 11 16 16 C 1.38171 * 120.04634 * 359.69468 * 15 13 12 17 17 Cl 1.73605 * 120.03923 * 180.02562 * 16 15 13 18 18 C 1.38822 * 120.02364 * 80.94226 * 11 10 9 19 19 N 1.39812 * 120.06423 * 0.02562 * 18 11 10 20 20 C 1.46504 * 119.99818 * 139.25533 * 9 7 2 21 21 C 1.55235 * 110.58116 * 55.55041 * 20 9 7 22 22 C 1.54893 * 102.58334 * 203.33826 * 21 20 9 23 23 C 1.54257 * 104.31580 * 37.93155 * 22 21 20 24 24 C 1.53874 * 106.60103 * 336.32455 * 23 22 21 25 25 H 0.97004 * 120.00119 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.47212 * 24.17901 * 10 9 7 27 27 H 1.09000 * 109.46778 * 144.18392 * 10 9 7 28 28 H 1.07999 * 119.96265 * 359.97438 * 12 11 10 29 29 H 1.07996 * 119.97542 * 179.72897 * 15 13 12 30 30 H 0.96997 * 120.00807 * 7.25647 * 19 18 11 31 31 H 0.97008 * 119.99954 * 187.26649 * 19 18 11 32 32 H 1.08998 * 110.43282 * 178.13291 * 20 9 7 33 33 H 1.08993 * 110.90102 * 85.05035 * 21 20 9 34 34 H 1.08996 * 110.76549 * 321.56528 * 21 20 9 35 35 H 1.09000 * 110.48858 * 279.18298 * 22 21 20 36 36 H 1.09003 * 110.48345 * 156.67601 * 22 21 20 37 37 H 1.09006 * 110.03054 * 95.60748 * 23 22 21 38 38 H 1.09003 * 110.03725 * 216.99145 * 23 22 21 39 39 H 1.08996 * 110.03862 * 119.28207 * 24 23 22 40 40 H 1.09004 * 110.03514 * 240.67070 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6528 0.6999 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0563 -1.2218 -0.2673 9 7 1.3685 -2.3631 0.3404 10 6 0.4155 -2.3745 1.4530 11 6 1.1127 -2.8362 2.7069 12 6 0.9838 -4.1460 3.1271 13 6 1.6275 -4.5724 4.2752 14 17 1.4687 -6.2208 4.7959 15 6 2.3931 -3.6858 5.0124 16 6 2.5215 -2.3734 4.5997 17 17 3.4824 -1.2618 5.5243 18 6 1.8802 -1.9442 3.4434 19 7 2.0072 -0.6167 3.0236 20 6 1.6351 -3.5937 -0.4085 21 6 3.1538 -3.9150 -0.4075 22 6 3.3118 -4.8023 -1.6672 23 6 2.3546 -4.1725 -2.7000 24 6 1.2885 -3.4040 -1.8997 25 1 -0.4850 0.8401 -0.0004 26 1 0.0224 -1.3693 1.6051 27 1 -0.4045 -3.0544 1.2220 28 1 0.3828 -4.8388 2.5568 29 1 2.8910 -4.0202 5.9105 30 1 1.4773 -0.2904 2.2795 31 1 2.6253 -0.0218 3.4764 32 1 1.0693 -4.4251 0.0119 33 1 3.4342 -4.4655 0.4904 34 1 3.7420 -3.0022 -0.5018 35 1 3.0169 -5.8290 -1.4501 36 1 4.3392 -4.7702 -2.0300 37 1 2.9020 -3.4870 -3.3469 38 1 1.8835 -4.9532 -3.2972 39 1 1.3184 -2.3455 -2.1582 40 1 0.2992 -3.8113 -2.1085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602478266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:48:42 Heat of formation + Delta-G solvation = 5.602795 kcal Electronic energy + Delta-G solvation = -24481.829963 eV Core-core repulsion = 20961.255846 eV Total energy + Delta-G solvation = -3520.574117 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.71864 -39.09042 -37.59129 -37.30904 -36.12512 -34.95038 -33.39089 -31.84125 -29.46524 -29.30402 -28.26010 -27.30839 -24.58942 -23.32958 -22.00175 -21.26456 -20.68967 -18.48906 -18.19067 -17.89914 -17.10472 -16.82063 -16.51149 -15.89721 -15.43599 -15.37265 -15.22951 -14.70940 -14.56711 -14.22156 -14.00286 -13.77679 -13.24841 -13.08445 -12.93377 -12.81697 -12.59076 -12.47522 -12.36752 -12.18222 -11.88488 -11.85625 -11.78198 -11.73894 -11.69487 -11.62576 -11.14399 -11.05474 -11.03086 -10.50182 -9.65256 -8.42060 -8.31350 -7.81398 -5.41688 0.27136 0.48050 1.04286 1.37492 1.46931 1.51157 1.51643 2.45835 2.69205 3.08001 3.25009 3.74188 3.86200 4.04409 4.08299 4.14749 4.32136 4.35465 4.46434 4.71173 4.79490 4.82191 4.90926 4.95666 4.97174 4.99455 5.03524 5.23871 5.24580 5.27924 5.36570 5.44561 5.57845 5.64804 5.68054 5.72814 5.74718 5.83674 6.52502 6.61239 6.95157 7.21144 7.87579 8.44913 9.15146 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.009636 B = 0.006218 C = 0.004339 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.028228 B = 4501.677979 C = 6451.436715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C -0.023 4.023 3 Si 0.914 3.086 4 H -0.291 1.291 5 H -0.287 1.287 6 H -0.269 1.269 7 C -0.224 4.224 8 H 0.047 0.953 9 N -0.577 5.577 10 C 0.192 3.808 11 C -0.150 4.150 12 C -0.056 4.056 13 C -0.089 4.089 14 Cl -0.070 7.070 15 C -0.061 4.061 16 C -0.123 4.123 17 Cl -0.068 7.068 18 C 0.245 3.755 19 N -0.859 5.859 20 C 0.168 3.832 21 C -0.126 4.126 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.129 4.129 25 H 0.253 0.747 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.138 0.862 29 H 0.152 0.848 30 H 0.411 0.589 31 H 0.393 0.607 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.687 -8.397 6.259 11.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.220 4.220 3 Si 0.743 3.257 4 H -0.218 1.218 5 H -0.212 1.212 6 H -0.194 1.194 7 C -0.355 4.355 8 H 0.065 0.935 9 N -0.295 5.295 10 C 0.066 3.934 11 C -0.158 4.158 12 C -0.077 4.077 13 C -0.118 4.118 14 Cl -0.041 7.041 15 C -0.081 4.081 16 C -0.155 4.155 17 Cl -0.040 7.040 18 C 0.135 3.865 19 N -0.399 5.399 20 C 0.061 3.939 21 C -0.166 4.166 22 C -0.151 4.151 23 C -0.152 4.152 24 C -0.168 4.168 25 H 0.062 0.938 26 H 0.094 0.906 27 H 0.057 0.943 28 H 0.156 0.844 29 H 0.170 0.830 30 H 0.246 0.754 31 H 0.222 0.778 32 H 0.079 0.921 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.090 0.910 39 H 0.062 0.938 40 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.603 -8.263 6.338 11.019 hybrid contribution 0.433 1.710 -0.168 1.772 sum 4.036 -6.553 6.169 9.864 Atomic orbital electron populations 1.70058 1.05919 1.25801 1.53723 1.25558 0.95368 0.99888 1.01184 0.86125 0.79353 0.82312 0.77913 1.21834 1.21241 1.19366 1.18865 0.91782 0.85165 1.39696 0.93544 1.43900 1.49276 1.05378 1.30914 1.19624 0.89927 1.00946 0.82892 1.20541 1.03336 0.92990 0.98889 1.20827 0.97793 0.94674 0.94409 1.20313 1.06226 0.86439 0.98865 1.98321 1.97226 1.18095 1.90451 1.20606 0.97727 0.89820 0.99943 1.20156 1.06385 0.92483 0.96515 1.98304 1.70597 1.62479 1.72573 1.17569 0.92516 0.86122 0.90306 1.43168 1.48198 1.08751 1.39761 1.21463 0.93884 0.88033 0.90513 1.22770 0.98115 0.98456 0.97225 1.22243 0.99159 0.98853 0.94833 1.22019 0.96688 0.98903 0.97577 1.22432 0.97563 0.99671 0.97147 0.93759 0.90601 0.94315 0.84417 0.83022 0.75351 0.77795 0.92083 0.92980 0.93500 0.90698 0.91542 0.93021 0.90999 0.93822 0.93623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.94 11.49 21.65 0.25 -46.69 16 2 C -0.02 -1.11 3.28 84.86 0.28 -0.83 16 3 Si 0.91 40.13 29.11 68.60 2.00 42.12 16 4 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 5 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 6 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 7 C -0.22 -10.69 6.97 84.03 0.59 -10.10 16 8 H 0.05 2.35 6.50 -2.91 -0.02 2.33 16 9 N -0.58 -25.06 2.43 -675.69 -1.64 -26.71 16 10 C 0.19 8.09 4.85 85.64 0.41 8.50 16 11 C -0.15 -5.54 5.47 -19.74 -0.11 -5.64 16 12 C -0.06 -1.80 9.45 22.28 0.21 -1.59 16 13 C -0.09 -2.59 6.32 22.34 0.14 -2.45 16 14 Cl -0.07 -1.73 28.95 -2.72 -0.08 -1.80 16 15 C -0.06 -1.74 9.61 22.29 0.21 -1.53 16 16 C -0.12 -3.92 6.34 22.44 0.14 -3.78 16 17 Cl -0.07 -1.92 27.61 -2.72 -0.08 -1.99 16 18 C 0.25 8.96 6.73 38.19 0.26 9.22 16 19 N -0.86 -32.66 8.60 -51.27 -0.44 -33.11 16 20 C 0.17 6.39 3.38 46.19 0.16 6.55 16 21 C -0.13 -4.41 6.44 32.01 0.21 -4.20 16 22 C -0.11 -3.17 6.82 31.67 0.22 -2.95 16 23 C -0.11 -3.40 6.80 31.32 0.21 -3.19 16 24 C -0.13 -4.82 6.42 31.32 0.20 -4.62 16 25 H 0.25 12.86 8.31 -92.70 -0.77 12.09 16 26 H 0.08 3.61 4.61 -2.39 -0.01 3.59 16 27 H 0.04 1.59 7.95 -2.39 -0.02 1.57 16 28 H 0.14 4.02 8.04 -2.91 -0.02 3.99 16 29 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 30 H 0.41 17.39 3.71 -92.71 -0.34 17.04 16 31 H 0.39 13.63 7.54 -92.70 -0.70 12.93 16 32 H 0.06 2.20 7.94 -2.39 -0.02 2.18 16 33 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.05 1.86 6.41 -2.39 -0.02 1.84 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.04 1.97 7.10 -2.39 -0.02 1.95 16 40 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 Total: -1.00 -49.66 343.41 3.18 -46.48 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: 0.04 Total: 38.31 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 3.13 Total: -16.61 kcal Atomic # 7 Polarization: -104.67 SS G_CDS: -1.83 Total: -106.50 kcal Atomic # 14 Polarization: 40.13 SS G_CDS: 2.00 Total: 42.12 kcal Atomic # 17 Polarization: -3.65 SS G_CDS: -0.15 Total: -3.80 kcal Total: -49.66 3.18 -46.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602478266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.082 kcal (2) G-P(sol) polarization free energy of solvation -49.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.479 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds