Wall clock time and date at job start Tue Mar 31 2020 14:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00169 * 2 1 4 4 H 1.48502 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47146 * 299.99368 * 3 2 1 6 6 H 1.48504 * 109.47487 * 59.99587 * 3 2 1 7 7 C 1.37879 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99996 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00191 * 0.02562 * 7 2 1 10 10 C 1.53115 * 109.57589 * 60.29471 * 9 7 2 11 11 C 1.53035 * 109.27766 * 177.60480 * 10 9 7 12 12 N 1.46846 * 109.51454 * 300.79861 * 11 10 9 13 13 C 1.46897 * 111.00345 * 185.84683 * 12 11 10 14 14 C 1.50703 * 109.47606 * 184.00773 * 13 12 11 15 15 C 1.38164 * 120.02105 * 105.81644 * 14 13 12 16 16 C 1.38355 * 120.07766 * 179.72673 * 15 14 13 17 17 Cl 1.73596 * 119.93488 * 180.25940 * 16 15 14 18 18 C 1.38412 * 120.12734 * 0.55212 * 16 15 14 19 19 C 1.38172 * 120.05096 * 359.72658 * 18 16 15 20 20 Cl 1.73592 * 120.04242 * 180.02562 * 19 18 16 21 21 C 1.38825 * 120.02403 * 286.09708 * 14 13 12 22 22 N 1.39820 * 120.06590 * 359.97438 * 21 14 13 23 23 C 1.46855 * 111.19391 * 61.75270 * 12 11 10 24 24 C 1.53031 * 109.52153 * 298.25424 * 23 12 11 25 25 H 0.96996 * 120.00319 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.51983 * 300.12286 * 9 7 2 27 27 H 1.08995 * 109.51445 * 57.65443 * 10 9 7 28 28 H 1.09003 * 109.49245 * 297.53959 * 10 9 7 29 29 H 1.09007 * 109.46308 * 180.79831 * 11 10 9 30 30 H 1.09000 * 109.47090 * 60.81552 * 11 10 9 31 31 H 1.09002 * 109.47107 * 304.01108 * 13 12 11 32 32 H 1.09003 * 109.47029 * 64.00903 * 13 12 11 33 33 H 1.07995 * 119.96630 * 359.97438 * 15 14 13 34 34 H 1.07993 * 119.97544 * 179.74834 * 18 16 15 35 35 H 0.97003 * 119.99853 * 5.08146 * 22 21 14 36 36 H 0.96992 * 120.00155 * 185.07665 * 22 21 14 37 37 H 1.08994 * 109.46013 * 58.27646 * 23 12 11 38 38 H 1.09006 * 109.45726 * 178.25203 * 23 12 11 39 39 H 1.08997 * 109.50476 * 179.12057 * 24 23 12 40 40 H 1.09004 * 109.50916 * 299.20428 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 0.3758 -2.5863 -1.2528 11 6 -0.3401 -3.9386 -1.2762 12 7 0.6536 -5.0198 -1.2755 13 6 0.0073 -6.3290 -1.4372 14 6 1.0444 -7.4176 -1.3333 15 6 1.1164 -8.1973 -0.1950 16 6 2.0644 -9.2006 -0.1007 17 17 2.1472 -10.1825 1.3285 18 6 2.9507 -9.4191 -1.1411 19 6 2.8871 -8.6387 -2.2796 20 17 3.9983 -8.9133 -3.5846 21 6 1.9317 -7.6337 -2.3789 22 7 1.8643 -6.8425 -3.5297 23 6 1.4750 -4.9852 -0.0587 24 6 2.2449 -3.6640 0.0012 25 1 -0.4850 0.8400 -0.0004 26 1 0.6220 -2.5566 0.8889 27 1 1.0007 -2.4899 -2.1406 28 1 -0.3621 -1.7841 -1.2377 29 1 -0.9532 -4.0096 -2.1747 30 1 -0.9754 -4.0287 -0.3950 31 1 -0.7407 -6.4640 -0.6559 32 1 -0.4744 -6.3782 -2.4138 33 1 0.4295 -8.0260 0.6205 34 1 3.6922 -10.2003 -1.0632 35 1 1.2472 -6.0951 -3.5690 36 1 2.4345 -7.0410 -4.2888 37 1 0.8311 -5.0704 0.8166 38 1 2.1804 -5.8161 -0.0730 39 1 2.8424 -3.6319 0.9122 40 1 2.8998 -3.5846 -0.8666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602595895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:48 Heat of formation + Delta-G solvation = 1.114129 kcal Electronic energy + Delta-G solvation = -23587.870202 eV Core-core repulsion = 20067.101442 eV Total energy + Delta-G solvation = -3520.768760 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.14522 -38.05056 -36.82956 -36.41508 -34.51787 -34.03567 -32.02055 -30.65755 -29.63779 -28.59542 -26.68391 -24.56966 -22.64080 -22.36608 -21.72771 -20.73604 -18.63084 -17.49746 -17.33215 -16.42176 -16.31216 -15.33707 -14.70677 -14.66945 -14.59721 -14.33994 -13.94245 -13.82964 -13.26293 -13.02629 -12.57931 -12.49301 -12.36350 -12.24038 -11.81954 -11.70538 -11.46930 -11.37112 -11.08508 -10.97753 -10.94027 -10.76484 -10.43223 -10.29872 -10.22768 -10.00166 -9.46471 -9.01539 -8.87060 -8.72095 -8.30784 -7.87963 -7.56612 -5.98415 -4.03227 0.96549 1.19588 1.82581 2.28571 3.29552 3.37703 3.38080 3.42256 3.76717 4.39336 4.45053 4.51275 4.86496 4.97766 5.11253 5.32133 5.34617 5.51459 5.64657 5.70405 5.75362 5.87303 5.94947 6.08469 6.12627 6.21461 6.32172 6.37925 6.54493 6.62852 6.85632 7.05925 7.11674 7.27172 7.38862 7.56967 7.60444 7.69616 7.80421 8.03528 8.13903 8.47964 9.00746 9.61370 11.07828 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015930 B = 0.003146 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.227525 B = 8899.327476 C = 9499.773291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.103 4.103 11 C 0.056 3.944 12 N -0.531 5.531 13 C 0.096 3.904 14 C -0.133 4.133 15 C -0.049 4.049 16 C -0.088 4.088 17 Cl -0.074 7.074 18 C -0.053 4.053 19 C -0.114 4.114 20 Cl -0.068 7.068 21 C 0.263 3.737 22 N -0.852 5.852 23 C 0.061 3.939 24 C -0.105 4.105 25 H 0.258 0.742 26 H 0.020 0.980 27 H 0.043 0.957 28 H 0.093 0.907 29 H 0.055 0.945 30 H 0.025 0.975 31 H 0.043 0.957 32 H 0.078 0.922 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.414 0.586 36 H 0.398 0.602 37 H 0.023 0.977 38 H 0.060 0.940 39 H 0.048 0.952 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.426 -19.649 -5.059 20.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.141 4.141 11 C -0.071 4.071 12 N -0.256 5.256 13 C -0.031 4.031 14 C -0.139 4.139 15 C -0.069 4.069 16 C -0.117 4.117 17 Cl -0.046 7.046 18 C -0.073 4.073 19 C -0.146 4.146 20 Cl -0.039 7.039 21 C 0.153 3.847 22 N -0.390 5.390 23 C -0.067 4.067 24 C -0.143 4.143 25 H 0.068 0.932 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.111 0.889 29 H 0.074 0.926 30 H 0.043 0.957 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.156 0.844 35 H 0.246 0.754 36 H 0.228 0.772 37 H 0.042 0.958 38 H 0.079 0.921 39 H 0.067 0.933 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.677 -19.523 -5.460 20.341 hybrid contribution 0.057 0.879 0.448 0.988 sum 1.734 -18.644 -5.012 19.384 Atomic orbital electron populations 1.69875 1.05846 1.26170 1.51292 1.24957 0.94826 0.98977 0.95229 0.86595 0.80229 0.84029 0.77494 1.19843 1.21103 1.21145 1.21252 0.92921 0.90673 1.49849 0.92760 1.18685 0.92703 0.91773 0.93916 1.21650 1.00174 0.92844 0.99425 1.22304 0.93006 0.92966 0.98805 1.62181 1.23385 1.01020 1.39009 1.20908 0.93007 0.87712 1.01490 1.19156 1.00272 1.00737 0.93703 1.20823 0.96564 0.92496 0.96994 1.20266 1.01915 0.99116 0.90395 1.98351 1.98113 1.69823 1.38286 1.20558 0.97918 0.98488 0.90374 1.20059 0.98375 1.03109 0.93023 1.98339 1.61590 1.95824 1.48157 1.17265 0.90982 0.88637 0.87863 1.42737 1.47037 1.34512 1.14744 1.22135 0.95824 0.99371 0.89354 1.21661 0.98662 0.93731 1.00213 0.93188 0.96178 0.93863 0.88926 0.92616 0.95701 0.93913 0.90356 0.84735 0.84382 0.75413 0.77208 0.95835 0.92124 0.93318 0.92666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 11.37 55.43 0.63 -24.36 16 2 C 0.06 1.66 5.31 -17.82 -0.09 1.56 16 3 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -13.79 8.56 -34.44 -0.29 -14.09 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 9 C 0.05 1.16 2.16 -91.65 -0.20 0.96 16 10 C -0.10 -2.30 5.12 -26.65 -0.14 -2.43 16 11 C 0.06 1.00 5.46 -3.84 -0.02 0.98 16 12 N -0.53 -8.35 4.43 -236.11 -1.05 -9.40 16 13 C 0.10 1.22 4.45 -4.98 -0.02 1.20 16 14 C -0.13 -1.62 3.75 -104.43 -0.39 -2.01 16 15 C -0.05 -0.57 8.81 -39.57 -0.35 -0.92 16 16 C -0.09 -1.00 6.32 -39.47 -0.25 -1.25 16 17 Cl -0.07 -0.80 28.95 -51.86 -1.50 -2.30 16 18 C -0.05 -0.59 9.61 -39.54 -0.38 -0.97 16 19 C -0.11 -1.30 6.34 -39.32 -0.25 -1.55 16 20 Cl -0.07 -0.70 27.60 -51.86 -1.43 -2.13 16 21 C 0.26 3.13 6.74 -83.71 -0.56 2.57 16 22 N -0.85 -9.12 8.95 32.44 0.29 -8.83 16 23 C 0.06 1.05 5.08 -3.83 -0.02 1.03 16 24 C -0.10 -2.17 5.32 -26.65 -0.14 -2.31 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 27 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.09 2.34 6.18 -51.93 -0.32 2.02 16 29 H 0.06 0.88 8.12 -51.92 -0.42 0.46 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.04 0.53 7.94 -51.93 -0.41 0.12 16 32 H 0.08 0.89 7.52 -51.93 -0.39 0.50 16 33 H 0.13 1.46 7.99 -52.49 -0.42 1.04 16 34 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 35 H 0.41 4.54 7.02 -40.82 -0.29 4.25 16 36 H 0.40 3.76 7.52 -40.82 -0.31 3.45 16 37 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 1.00 6.26 -51.93 -0.32 0.67 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.05 1.18 8.14 -51.93 -0.42 0.75 16 LS Contribution 346.69 15.07 5.22 5.22 Total: -1.00 -27.23 346.69 -11.35 -38.58 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.38 Total: 4.32 kcal Atomic # 6 Polarization: -14.11 SS G_CDS: -3.11 Total: -17.22 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -0.13 Total: -42.59 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 17 Polarization: -1.49 SS G_CDS: -2.93 Total: -4.43 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -27.23 -11.35 -38.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602595895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.699 kcal (2) G-P(sol) polarization free energy of solvation -27.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds