Wall clock time and date at job start Tue Mar 31 2020 14:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00169 * 2 1 4 4 H 1.48502 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47146 * 299.99368 * 3 2 1 6 6 H 1.48504 * 109.47487 * 59.99587 * 3 2 1 7 7 C 1.37879 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99996 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00191 * 0.02562 * 7 2 1 10 10 C 1.53115 * 109.57589 * 60.29471 * 9 7 2 11 11 C 1.53035 * 109.27766 * 177.60480 * 10 9 7 12 12 N 1.46846 * 109.51454 * 300.79861 * 11 10 9 13 13 C 1.46897 * 111.00345 * 185.84683 * 12 11 10 14 14 C 1.50703 * 109.47606 * 184.00773 * 13 12 11 15 15 C 1.38164 * 120.02105 * 105.81644 * 14 13 12 16 16 C 1.38355 * 120.07766 * 179.72673 * 15 14 13 17 17 Cl 1.73596 * 119.93488 * 180.25940 * 16 15 14 18 18 C 1.38412 * 120.12734 * 0.55212 * 16 15 14 19 19 C 1.38172 * 120.05096 * 359.72658 * 18 16 15 20 20 Cl 1.73592 * 120.04242 * 180.02562 * 19 18 16 21 21 C 1.38825 * 120.02403 * 286.09708 * 14 13 12 22 22 N 1.39820 * 120.06590 * 359.97438 * 21 14 13 23 23 C 1.46855 * 111.19391 * 61.75270 * 12 11 10 24 24 C 1.53031 * 109.52153 * 298.25424 * 23 12 11 25 25 H 0.96996 * 120.00319 * 0.02562 * 1 2 3 26 26 H 1.09002 * 109.51983 * 300.12286 * 9 7 2 27 27 H 1.08995 * 109.51445 * 57.65443 * 10 9 7 28 28 H 1.09003 * 109.49245 * 297.53959 * 10 9 7 29 29 H 1.09007 * 109.46308 * 180.79831 * 11 10 9 30 30 H 1.09000 * 109.47090 * 60.81552 * 11 10 9 31 31 H 1.09002 * 109.47107 * 304.01108 * 13 12 11 32 32 H 1.09003 * 109.47029 * 64.00903 * 13 12 11 33 33 H 1.07995 * 119.96630 * 359.97438 * 15 14 13 34 34 H 1.07993 * 119.97544 * 179.74834 * 18 16 15 35 35 H 0.97003 * 119.99853 * 5.08146 * 22 21 14 36 36 H 0.96992 * 120.00155 * 185.07665 * 22 21 14 37 37 H 1.08994 * 109.46013 * 58.27646 * 23 12 11 38 38 H 1.09006 * 109.45726 * 178.25203 * 23 12 11 39 39 H 1.08997 * 109.50476 * 179.12057 * 24 23 12 40 40 H 1.09004 * 109.50916 * 299.20428 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 0.3758 -2.5863 -1.2528 11 6 -0.3401 -3.9386 -1.2762 12 7 0.6536 -5.0198 -1.2755 13 6 0.0073 -6.3290 -1.4372 14 6 1.0444 -7.4176 -1.3333 15 6 1.1164 -8.1973 -0.1950 16 6 2.0644 -9.2006 -0.1007 17 17 2.1472 -10.1825 1.3285 18 6 2.9507 -9.4191 -1.1411 19 6 2.8871 -8.6387 -2.2796 20 17 3.9983 -8.9133 -3.5846 21 6 1.9317 -7.6337 -2.3789 22 7 1.8643 -6.8425 -3.5297 23 6 1.4750 -4.9852 -0.0587 24 6 2.2449 -3.6640 0.0012 25 1 -0.4850 0.8400 -0.0004 26 1 0.6220 -2.5566 0.8889 27 1 1.0007 -2.4899 -2.1406 28 1 -0.3621 -1.7841 -1.2377 29 1 -0.9532 -4.0096 -2.1747 30 1 -0.9754 -4.0287 -0.3950 31 1 -0.7407 -6.4640 -0.6559 32 1 -0.4744 -6.3782 -2.4138 33 1 0.4295 -8.0260 0.6205 34 1 3.6922 -10.2003 -1.0632 35 1 1.2472 -6.0951 -3.5690 36 1 2.4345 -7.0410 -4.2888 37 1 0.8311 -5.0704 0.8166 38 1 2.1804 -5.8161 -0.0730 39 1 2.8424 -3.6319 0.9122 40 1 2.8998 -3.5846 -0.8666 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602595895.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:47 Heat of formation + Delta-G solvation = -13.396061 kcal Electronic energy + Delta-G solvation = -23588.499412 eV Core-core repulsion = 20067.101442 eV Total energy + Delta-G solvation = -3521.397969 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.10746 -39.42854 -37.66574 -37.32415 -35.81988 -35.22887 -33.62077 -32.02878 -31.15198 -29.53832 -28.16104 -26.11325 -23.86624 -23.52148 -23.26327 -21.87722 -20.31032 -18.43417 -18.35706 -18.23993 -17.21851 -16.81582 -16.37799 -15.72747 -15.57428 -15.47907 -15.09110 -14.94565 -14.77658 -14.44414 -14.23082 -13.79533 -13.53678 -13.33054 -13.02574 -12.88464 -12.83472 -12.78766 -12.56964 -12.35394 -12.11993 -12.07188 -11.89188 -11.84910 -11.71142 -11.33559 -11.15149 -10.76922 -10.63040 -10.35762 -9.81269 -9.17208 -8.44485 -8.06829 -6.19280 0.08495 0.31991 0.98150 1.39690 1.42383 1.43596 1.53035 2.44502 2.46913 2.92648 3.17018 3.20851 3.57212 3.99726 4.09995 4.17554 4.24868 4.31067 4.43024 4.48289 4.64307 4.66631 4.75517 4.79724 4.86942 4.95638 4.99965 5.09348 5.14694 5.24398 5.28278 5.38124 5.50775 5.59326 5.65401 6.03545 6.05771 6.29690 6.33148 6.42787 6.44265 6.87847 6.92171 7.48339 8.97592 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015930 B = 0.003146 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1757.227525 B = 8899.327476 C = 9499.773291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.532 4.532 8 H 0.046 0.954 9 C 0.045 3.955 10 C -0.093 4.093 11 C 0.068 3.932 12 N -0.528 5.528 13 C 0.100 3.900 14 C -0.144 4.144 15 C -0.050 4.050 16 C -0.095 4.095 17 Cl -0.070 7.070 18 C -0.051 4.051 19 C -0.122 4.122 20 Cl -0.060 7.060 21 C 0.258 3.742 22 N -0.848 5.848 23 C 0.073 3.927 24 C -0.097 4.097 25 H 0.260 0.740 26 H -0.013 1.013 27 H 0.033 0.967 28 H 0.061 0.939 29 H 0.082 0.918 30 H 0.017 0.983 31 H 0.050 0.950 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.152 0.848 35 H 0.413 0.587 36 H 0.404 0.596 37 H 0.020 0.980 38 H 0.075 0.925 39 H 0.044 0.956 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.767 -20.855 -5.731 21.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.183 4.183 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.570 4.570 8 H 0.065 0.935 9 C 0.026 3.974 10 C -0.131 4.131 11 C -0.059 4.059 12 N -0.253 5.253 13 C -0.026 4.026 14 C -0.150 4.150 15 C -0.070 4.070 16 C -0.124 4.124 17 Cl -0.042 7.042 18 C -0.071 4.071 19 C -0.154 4.154 20 Cl -0.031 7.031 21 C 0.146 3.854 22 N -0.386 5.386 23 C -0.055 4.055 24 C -0.135 4.135 25 H 0.069 0.931 26 H 0.005 0.995 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.035 0.965 31 H 0.068 0.932 32 H 0.115 0.885 33 H 0.159 0.841 34 H 0.169 0.831 35 H 0.245 0.755 36 H 0.234 0.766 37 H 0.038 0.962 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 2.024 -20.744 -6.143 21.729 hybrid contribution -0.019 1.214 0.660 1.382 sum 2.005 -19.530 -5.483 20.384 Atomic orbital electron populations 1.70002 1.06959 1.26895 1.51649 1.25666 0.95651 1.02053 0.94947 0.85649 0.79078 0.80192 0.77588 1.19509 1.20504 1.20783 1.21605 0.92840 0.92429 1.50136 0.93545 1.18655 0.93113 0.92256 0.93343 1.21386 0.99066 0.94853 0.97831 1.22064 0.92849 0.91248 0.99765 1.62087 1.23078 1.02214 1.37929 1.20936 0.93173 0.85767 1.02769 1.19085 1.00656 1.01030 0.94179 1.20939 0.96647 0.92405 0.97014 1.20334 1.02048 0.99272 0.90725 1.98353 1.98103 1.69672 1.38040 1.20746 0.97868 0.98477 0.90005 1.20156 0.98591 1.03169 0.93488 1.98342 1.61246 1.95776 1.47737 1.17377 0.91046 0.88850 0.88077 1.42734 1.47000 1.34234 1.14675 1.21942 0.95955 0.97582 0.90020 1.21511 0.97983 0.94371 0.99641 0.93123 0.99472 0.94857 0.92093 0.89956 0.96494 0.93225 0.88496 0.84085 0.83053 0.75480 0.76559 0.96191 0.90627 0.93759 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.27 11.37 21.45 0.24 -52.03 16 2 C 0.02 0.85 5.31 84.66 0.45 1.30 16 3 Si 0.95 43.72 29.54 68.60 2.03 45.74 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 7 C -0.53 -29.50 8.56 25.60 0.22 -29.28 16 8 H 0.05 2.57 7.74 -2.91 -0.02 2.55 16 9 C 0.04 2.23 2.16 -11.46 -0.02 2.20 16 10 C -0.09 -4.22 5.12 30.64 0.16 -4.06 16 11 C 0.07 2.37 5.46 86.33 0.47 2.84 16 12 N -0.53 -15.75 4.43 -900.91 -4.00 -19.74 16 13 C 0.10 2.29 4.45 85.56 0.38 2.67 16 14 C -0.14 -3.17 3.75 -19.74 -0.07 -3.24 16 15 C -0.05 -1.06 8.81 22.28 0.20 -0.87 16 16 C -0.09 -1.97 6.32 22.34 0.14 -1.83 16 17 Cl -0.07 -1.39 28.95 -2.72 -0.08 -1.46 16 18 C -0.05 -1.01 9.61 22.30 0.21 -0.80 16 19 C -0.12 -2.54 6.34 22.44 0.14 -2.40 16 20 Cl -0.06 -1.12 27.60 -2.72 -0.08 -1.19 16 21 C 0.26 5.58 6.74 38.20 0.26 5.83 16 22 N -0.85 -16.40 8.95 -51.26 -0.46 -16.86 16 23 C 0.07 2.44 5.08 86.32 0.44 2.88 16 24 C -0.10 -4.04 5.32 30.65 0.16 -3.87 16 25 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 26 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 27 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.06 3.15 6.18 -2.39 -0.01 3.14 16 29 H 0.08 2.44 8.12 -2.38 -0.02 2.42 16 30 H 0.02 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.05 1.10 7.94 -2.39 -0.02 1.09 16 32 H 0.10 1.89 7.52 -2.39 -0.02 1.87 16 33 H 0.14 2.76 7.99 -2.91 -0.02 2.74 16 34 H 0.15 2.53 8.06 -2.91 -0.02 2.51 16 35 H 0.41 8.14 7.02 -92.71 -0.65 7.49 16 36 H 0.40 6.84 7.52 -92.71 -0.70 6.15 16 37 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.08 2.35 6.26 -2.38 -0.01 2.33 16 39 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 Total: -1.00 -58.63 346.69 0.52 -58.11 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -0.27 Total: 16.06 kcal Atomic # 6 Polarization: -31.76 SS G_CDS: 3.13 Total: -28.63 kcal Atomic # 7 Polarization: -84.42 SS G_CDS: -4.21 Total: -88.63 kcal Atomic # 14 Polarization: 43.72 SS G_CDS: 2.03 Total: 45.74 kcal Atomic # 17 Polarization: -2.50 SS G_CDS: -0.15 Total: -2.66 kcal Total: -58.63 0.52 -58.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602595895.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.712 kcal (2) G-P(sol) polarization free energy of solvation -58.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds