Wall clock time and date at job start Tue Mar 31 2020 14:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86794 * 119.99863 * 2 1 4 4 H 1.48503 * 109.46895 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47698 * 300.00200 * 3 2 1 6 6 H 1.48507 * 109.47095 * 60.00223 * 3 2 1 7 7 C 1.37878 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99598 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00316 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50097 * 299.92425 * 9 7 2 11 11 C 1.53122 * 109.49873 * 60.00382 * 9 7 2 12 12 C 1.53121 * 109.15724 * 177.59609 * 11 9 7 13 13 C 1.53044 * 109.27854 * 302.34554 * 12 11 9 14 14 N 1.46839 * 109.52268 * 59.17731 * 13 12 11 15 15 C 1.46899 * 111.00201 * 174.16391 * 14 13 12 16 16 C 1.50703 * 109.47344 * 64.31643 * 15 14 13 17 17 C 1.38162 * 120.02596 * 264.45308 * 16 15 14 18 18 C 1.38349 * 120.08034 * 179.97438 * 17 16 15 19 19 Cl 1.73599 * 119.93569 * 179.97438 * 18 17 16 20 20 C 1.38408 * 120.12789 * 359.68007 * 18 17 16 21 21 C 1.38172 * 120.05099 * 0.59857 * 20 18 17 22 22 Cl 1.73602 * 120.04402 * 179.69926 * 21 20 18 23 23 C 1.38824 * 120.01950 * 84.42570 * 16 15 14 24 24 N 1.39809 * 120.06845 * 0.04824 * 23 16 15 25 25 C 1.46851 * 111.20278 * 298.25889 * 14 13 12 26 26 H 0.97004 * 119.99501 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.52653 * 57.69215 * 11 9 7 28 28 H 1.08998 * 109.57244 * 297.52800 * 11 9 7 29 29 H 1.08996 * 109.50632 * 182.40545 * 12 11 9 30 30 H 1.08996 * 109.50618 * 62.28249 * 12 11 9 31 31 H 1.09009 * 109.46116 * 299.16578 * 13 12 11 32 32 H 1.08994 * 109.46266 * 179.20164 * 13 12 11 33 33 H 1.08999 * 109.46887 * 304.32099 * 15 14 13 34 34 H 1.08996 * 109.47619 * 184.31806 * 15 14 13 35 35 H 1.08002 * 119.96057 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.97499 * 180.29984 * 20 18 17 37 37 H 0.97006 * 120.00484 * 190.32347 * 24 23 16 38 38 H 0.97001 * 120.00162 * 10.33102 * 24 23 16 39 39 H 1.09002 * 109.46591 * 181.75709 * 25 14 13 40 40 H 1.09001 * 109.46434 * 301.73054 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6256 -2.5582 0.8902 11 6 0.3701 -2.5807 -1.2503 12 6 -0.3457 -3.9341 -1.2731 13 6 0.6944 -5.0564 -1.2417 14 7 1.5111 -4.9347 -0.0274 15 6 2.4287 -6.0741 0.1063 16 6 3.4133 -6.0627 -1.0345 17 6 3.1744 -6.8252 -2.1617 18 6 4.0773 -6.8152 -3.2099 19 17 3.7736 -7.7751 -4.6240 20 6 5.2192 -6.0366 -3.1357 21 6 5.4664 -5.2765 -2.0086 22 17 6.9027 -4.3061 -1.9126 23 6 4.5609 -5.2857 -0.9538 24 7 4.8053 -4.5136 0.1859 25 6 2.2449 -3.6629 -0.0061 26 1 -0.4849 0.8401 0.0004 27 1 0.9909 -2.4819 -2.1407 28 1 -0.3678 -1.7787 -1.2298 29 1 -0.9414 -4.0155 -2.1822 30 1 -0.9962 -4.0166 -0.4024 31 1 1.3360 -4.9816 -2.1198 32 1 0.1877 -6.0214 -1.2436 33 1 1.8594 -7.0034 0.0855 34 1 2.9666 -5.9985 1.0512 35 1 2.2816 -7.4297 -2.2246 36 1 5.9200 -6.0269 -3.9574 37 1 5.5221 -3.8600 0.1844 38 1 4.2582 -4.6315 0.9781 39 1 2.8642 -3.6159 0.8896 40 1 2.8791 -3.5946 -0.8900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602704616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:55 Heat of formation + Delta-G solvation = 11.089208 kcal Electronic energy + Delta-G solvation = -24311.768303 eV Core-core repulsion = 20791.432095 eV Total energy + Delta-G solvation = -3520.336208 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.32752 -37.92951 -36.75477 -36.27220 -34.52410 -33.94532 -32.14653 -30.41929 -29.81240 -28.54100 -26.01844 -24.97577 -22.94318 -22.38610 -21.40447 -20.77341 -18.56441 -17.45051 -17.32719 -16.47521 -16.18565 -15.12087 -14.88738 -14.58582 -14.54373 -14.26364 -14.03856 -13.67646 -13.20972 -12.90928 -12.58869 -12.41822 -12.31737 -12.21578 -11.81815 -11.71116 -11.40621 -11.18038 -11.04026 -10.98338 -10.91332 -10.71497 -10.62336 -10.18538 -10.09215 -9.81498 -9.50006 -9.12343 -8.80293 -8.70307 -8.32293 -7.82350 -7.45016 -5.98861 -4.04869 1.05494 1.25563 1.91424 2.35996 3.27998 3.36555 3.39167 3.47049 3.79961 4.37742 4.50506 4.68231 4.91667 5.05357 5.10442 5.31521 5.43164 5.56370 5.68193 5.74161 5.83262 5.90802 5.98732 6.07778 6.19883 6.29684 6.41430 6.44904 6.47846 6.71345 6.76476 6.93963 7.20060 7.32232 7.37423 7.59163 7.69378 7.71815 7.76884 8.06146 8.16343 8.46485 8.99162 9.59573 11.07025 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.004532 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.315794 B = 6176.721912 C = 7314.676628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.887 3.113 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.511 4.511 8 H 0.052 0.948 9 C 0.054 3.946 10 H 0.032 0.968 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.061 3.939 14 N -0.527 5.527 15 C 0.100 3.900 16 C -0.172 4.172 17 C -0.046 4.046 18 C -0.087 4.087 19 Cl -0.076 7.076 20 C -0.055 4.055 21 C -0.108 4.108 22 Cl -0.066 7.066 23 C 0.256 3.744 24 N -0.858 5.858 25 C 0.066 3.934 26 H 0.259 0.741 27 H 0.028 0.972 28 H 0.090 0.910 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.057 0.943 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.402 0.598 38 H 0.407 0.593 39 H 0.057 0.943 40 H 0.030 0.970 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.346 -14.633 -3.465 17.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.716 3.284 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.550 4.550 8 H 0.071 0.929 9 C 0.035 3.965 10 H 0.050 0.950 11 C -0.148 4.148 12 C -0.156 4.156 13 C -0.067 4.067 14 N -0.249 5.249 15 C -0.029 4.029 16 C -0.179 4.179 17 C -0.066 4.066 18 C -0.116 4.116 19 Cl -0.048 7.048 20 C -0.076 4.076 21 C -0.140 4.140 22 Cl -0.037 7.037 23 C 0.146 3.854 24 N -0.399 5.399 25 C -0.061 4.061 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.108 0.892 29 H 0.064 0.936 30 H 0.078 0.922 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.152 0.848 36 H 0.156 0.844 37 H 0.233 0.767 38 H 0.241 0.759 39 H 0.075 0.925 40 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 7.953 -14.491 -3.133 16.824 hybrid contribution 1.241 1.255 -0.718 1.905 sum 9.194 -13.236 -3.851 16.569 Atomic orbital electron populations 1.69906 1.05810 1.26155 1.50762 1.24922 0.94792 0.98878 0.95184 0.86616 0.80117 0.84156 0.77548 1.19923 1.21110 1.21081 1.21139 0.92716 0.90620 1.50516 0.92944 1.18684 0.92624 0.90460 0.94730 0.95002 1.21640 1.00003 0.94720 0.98457 1.21679 0.97191 0.96513 1.00178 1.22051 0.95421 0.98609 0.90635 1.62470 1.22299 1.02227 1.37900 1.21136 0.91483 0.96198 0.94070 1.20192 0.96169 1.01768 0.99761 1.20776 0.97796 0.97082 0.90964 1.20311 0.98310 1.02023 0.90930 1.98344 1.95813 1.70740 1.39873 1.20562 0.96282 0.94156 0.96565 1.20108 0.92170 1.04151 0.97551 1.98345 1.36960 1.70235 1.98175 1.17311 0.90977 0.90197 0.86906 1.43087 1.40427 1.42725 1.13653 1.22544 0.96428 0.88339 0.98812 0.93146 0.95299 0.89186 0.93560 0.92160 0.95251 0.92490 0.89978 0.90592 0.84776 0.84433 0.76707 0.75927 0.92510 0.95196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.99 11.35 55.43 0.63 -24.36 16 2 C 0.06 1.72 5.30 -17.81 -0.09 1.63 16 3 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -13.58 8.56 -34.44 -0.29 -13.87 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.05 1.30 2.26 -91.69 -0.21 1.09 16 10 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 11 C -0.11 -2.57 5.02 -26.61 -0.13 -2.71 16 12 C -0.12 -2.25 6.09 -26.65 -0.16 -2.42 16 13 C 0.06 1.01 4.87 -3.83 -0.02 1.00 16 14 N -0.53 -8.79 4.86 -236.11 -1.15 -9.94 16 15 C 0.10 1.30 5.31 -4.97 -0.03 1.28 16 16 C -0.17 -2.27 4.07 -104.43 -0.43 -2.69 16 17 C -0.05 -0.57 8.29 -39.57 -0.33 -0.90 16 18 C -0.09 -1.09 6.32 -39.48 -0.25 -1.34 16 19 Cl -0.08 -0.87 28.95 -51.86 -1.50 -2.38 16 20 C -0.06 -0.70 9.60 -39.54 -0.38 -1.08 16 21 C -0.11 -1.44 6.34 -39.31 -0.25 -1.69 16 22 Cl -0.07 -0.82 27.63 -51.86 -1.43 -2.25 16 23 C 0.26 3.47 5.37 -83.71 -0.45 3.02 16 24 N -0.86 -10.83 7.14 32.44 0.23 -10.60 16 25 C 0.07 1.27 3.05 -3.83 -0.01 1.26 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.09 2.37 6.15 -51.93 -0.32 2.05 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 31 H 0.03 0.51 6.78 -51.92 -0.35 0.16 16 32 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 33 H 0.08 0.94 8.00 -51.93 -0.42 0.52 16 34 H 0.08 0.90 6.71 -51.93 -0.35 0.56 16 35 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 36 H 0.14 1.52 8.06 -52.48 -0.42 1.10 16 37 H 0.40 4.91 7.58 -40.82 -0.31 4.60 16 38 H 0.41 4.90 5.07 -40.82 -0.21 4.69 16 39 H 0.06 1.04 5.95 -51.93 -0.31 0.73 16 40 H 0.03 0.61 6.04 -51.93 -0.31 0.30 16 LS Contribution 336.35 15.07 5.07 5.07 Total: -1.00 -27.66 336.35 -11.28 -38.93 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -5.07 Total: 6.92 kcal Atomic # 6 Polarization: -14.39 SS G_CDS: -3.03 Total: -17.42 kcal Atomic # 7 Polarization: -44.61 SS G_CDS: -0.29 Total: -44.90 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -1.69 SS G_CDS: -2.93 Total: -4.63 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.66 -11.28 -38.93 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.020 kcal (2) G-P(sol) polarization free energy of solvation -27.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds