Wall clock time and date at job start Tue Mar 31 2020 14:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31526 * 1 3 3 Si 1.86794 * 119.99863 * 2 1 4 4 H 1.48503 * 109.46895 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47698 * 300.00200 * 3 2 1 6 6 H 1.48507 * 109.47095 * 60.00223 * 3 2 1 7 7 C 1.37878 * 119.99612 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99598 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00316 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.50097 * 299.92425 * 9 7 2 11 11 C 1.53122 * 109.49873 * 60.00382 * 9 7 2 12 12 C 1.53121 * 109.15724 * 177.59609 * 11 9 7 13 13 C 1.53044 * 109.27854 * 302.34554 * 12 11 9 14 14 N 1.46839 * 109.52268 * 59.17731 * 13 12 11 15 15 C 1.46899 * 111.00201 * 174.16391 * 14 13 12 16 16 C 1.50703 * 109.47344 * 64.31643 * 15 14 13 17 17 C 1.38162 * 120.02596 * 264.45308 * 16 15 14 18 18 C 1.38349 * 120.08034 * 179.97438 * 17 16 15 19 19 Cl 1.73599 * 119.93569 * 179.97438 * 18 17 16 20 20 C 1.38408 * 120.12789 * 359.68007 * 18 17 16 21 21 C 1.38172 * 120.05099 * 0.59857 * 20 18 17 22 22 Cl 1.73602 * 120.04402 * 179.69926 * 21 20 18 23 23 C 1.38824 * 120.01950 * 84.42570 * 16 15 14 24 24 N 1.39809 * 120.06845 * 0.04824 * 23 16 15 25 25 C 1.46851 * 111.20278 * 298.25889 * 14 13 12 26 26 H 0.97004 * 119.99501 * 359.97438 * 1 2 3 27 27 H 1.08999 * 109.52653 * 57.69215 * 11 9 7 28 28 H 1.08998 * 109.57244 * 297.52800 * 11 9 7 29 29 H 1.08996 * 109.50632 * 182.40545 * 12 11 9 30 30 H 1.08996 * 109.50618 * 62.28249 * 12 11 9 31 31 H 1.09009 * 109.46116 * 299.16578 * 13 12 11 32 32 H 1.08994 * 109.46266 * 179.20164 * 13 12 11 33 33 H 1.08999 * 109.46887 * 304.32099 * 15 14 13 34 34 H 1.08996 * 109.47619 * 184.31806 * 15 14 13 35 35 H 1.08002 * 119.96057 * 359.97438 * 17 16 15 36 36 H 1.08004 * 119.97499 * 180.29984 * 20 18 17 37 37 H 0.97006 * 120.00484 * 190.32347 * 24 23 16 38 38 H 0.97001 * 120.00162 * 10.33102 * 24 23 16 39 39 H 1.09002 * 109.46591 * 181.75709 * 25 14 13 40 40 H 1.09001 * 109.46434 * 301.73054 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3153 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6256 -2.5582 0.8902 11 6 0.3701 -2.5807 -1.2503 12 6 -0.3457 -3.9341 -1.2731 13 6 0.6944 -5.0564 -1.2417 14 7 1.5111 -4.9347 -0.0274 15 6 2.4287 -6.0741 0.1063 16 6 3.4133 -6.0627 -1.0345 17 6 3.1744 -6.8252 -2.1617 18 6 4.0773 -6.8152 -3.2099 19 17 3.7736 -7.7751 -4.6240 20 6 5.2192 -6.0366 -3.1357 21 6 5.4664 -5.2765 -2.0086 22 17 6.9027 -4.3061 -1.9126 23 6 4.5609 -5.2857 -0.9538 24 7 4.8053 -4.5136 0.1859 25 6 2.2449 -3.6629 -0.0061 26 1 -0.4849 0.8401 0.0004 27 1 0.9909 -2.4819 -2.1407 28 1 -0.3678 -1.7787 -1.2298 29 1 -0.9414 -4.0155 -2.1822 30 1 -0.9962 -4.0166 -0.4024 31 1 1.3360 -4.9816 -2.1198 32 1 0.1877 -6.0214 -1.2436 33 1 1.8594 -7.0034 0.0855 34 1 2.9666 -5.9985 1.0512 35 1 2.2816 -7.4297 -2.2246 36 1 5.9200 -6.0269 -3.9574 37 1 5.5221 -3.8600 0.1844 38 1 4.2582 -4.6315 0.9781 39 1 2.8642 -3.6159 0.8896 40 1 2.8791 -3.5946 -0.8900 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602704616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:55 Heat of formation + Delta-G solvation = -4.343196 kcal Electronic energy + Delta-G solvation = -24312.437503 eV Core-core repulsion = 20791.432095 eV Total energy + Delta-G solvation = -3521.005408 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.40601 -39.27055 -37.69849 -37.30987 -35.71740 -35.39049 -33.77565 -31.70417 -31.44865 -29.56214 -27.20589 -26.89885 -24.22043 -23.52437 -22.94694 -22.03372 -20.16893 -18.56302 -18.34859 -18.28865 -17.22986 -16.78634 -16.15900 -15.92715 -15.71563 -15.51702 -15.18577 -14.83408 -14.77402 -14.36148 -14.10463 -13.88819 -13.47795 -13.37315 -13.20262 -12.88154 -12.80979 -12.73710 -12.55452 -12.27023 -12.19618 -12.03252 -11.82690 -11.74265 -11.67051 -11.36073 -11.17013 -10.81840 -10.57516 -10.35681 -9.83022 -9.13923 -8.47747 -8.06064 -6.18862 0.07963 0.27851 0.95545 1.38344 1.40480 1.41202 1.50843 2.42322 2.48625 2.82561 3.21489 3.24425 3.63327 3.98401 4.08873 4.11961 4.28309 4.31987 4.42808 4.52513 4.64361 4.72383 4.77632 4.81618 4.94077 4.98523 5.03278 5.08716 5.16816 5.22351 5.26699 5.44656 5.50863 5.56789 5.66322 6.00493 6.14718 6.24648 6.33775 6.37795 6.49801 6.72878 6.94887 7.48801 8.98433 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012341 B = 0.004532 C = 0.003827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.315794 B = 6176.721912 C = 7314.676628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.015 3.985 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.525 4.525 8 H 0.051 0.949 9 C 0.050 3.950 10 H -0.004 1.004 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.067 3.933 14 N -0.534 5.534 15 C 0.102 3.898 16 C -0.179 4.179 17 C -0.044 4.044 18 C -0.093 4.093 19 Cl -0.067 7.067 20 C -0.058 4.058 21 C -0.121 4.121 22 Cl -0.064 7.064 23 C 0.244 3.756 24 N -0.857 5.857 25 C 0.087 3.913 26 H 0.258 0.742 27 H 0.013 0.987 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.025 0.975 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.088 0.912 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.403 0.597 38 H 0.409 0.591 39 H 0.065 0.935 40 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.026 -16.221 -3.787 18.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.564 4.564 8 H 0.069 0.931 9 C 0.032 3.968 10 H 0.014 0.986 11 C -0.142 4.142 12 C -0.150 4.150 13 C -0.061 4.061 14 N -0.256 5.256 15 C -0.026 4.026 16 C -0.187 4.187 17 C -0.064 4.064 18 C -0.122 4.122 19 Cl -0.039 7.039 20 C -0.078 4.078 21 C -0.153 4.153 22 Cl -0.035 7.035 23 C 0.134 3.866 24 N -0.398 5.398 25 C -0.040 4.040 26 H 0.067 0.933 27 H 0.032 0.968 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.043 0.957 32 H 0.110 0.890 33 H 0.126 0.874 34 H 0.106 0.894 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.234 0.766 38 H 0.243 0.757 39 H 0.083 0.917 40 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 8.647 -16.095 -3.453 18.594 hybrid contribution 1.032 1.721 -0.646 2.108 sum 9.680 -14.375 -4.098 17.808 Atomic orbital electron populations 1.70048 1.07093 1.26726 1.51689 1.25657 0.95538 1.02053 0.95130 0.85683 0.79232 0.80383 0.77404 1.19142 1.21122 1.20696 1.21515 0.92857 0.92081 1.49918 0.93094 1.18626 0.93119 0.91779 0.93317 0.98578 1.21445 0.99022 0.96326 0.97384 1.21594 0.97706 0.95009 1.00710 1.22011 0.94715 0.98927 0.90445 1.62382 1.23094 1.02121 1.38005 1.21228 0.91279 0.95435 0.94639 1.20206 0.96154 1.02209 1.00093 1.20987 0.98215 0.96766 0.90455 1.20416 0.98314 1.02089 0.91375 1.98348 1.95751 1.70428 1.39338 1.20755 0.96612 0.93797 0.96658 1.20253 0.92484 1.04644 0.97931 1.98341 1.36785 1.70219 1.98188 1.17506 0.91403 0.90480 0.87163 1.43062 1.40471 1.42696 1.13619 1.22139 0.94909 0.88279 0.98718 0.93287 0.96793 0.92804 0.91834 0.92917 0.95716 0.89021 0.87389 0.89417 0.83029 0.83314 0.76636 0.75719 0.91708 0.96201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.04 11.35 21.45 0.24 -52.80 16 2 C 0.01 0.81 5.30 84.65 0.45 1.26 16 3 Si 0.95 43.64 29.54 68.60 2.03 45.66 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 5 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.52 -28.38 8.56 25.60 0.22 -28.16 16 8 H 0.05 2.70 7.74 -2.91 -0.02 2.68 16 9 C 0.05 2.48 2.26 -11.49 -0.03 2.45 16 10 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 11 C -0.10 -4.94 5.02 30.68 0.15 -4.79 16 12 C -0.11 -4.21 6.09 30.65 0.19 -4.02 16 13 C 0.07 2.06 4.87 86.33 0.42 2.48 16 14 N -0.53 -16.75 4.86 -900.92 -4.38 -21.12 16 15 C 0.10 2.35 5.31 85.56 0.45 2.81 16 16 C -0.18 -4.31 4.07 -19.74 -0.08 -4.39 16 17 C -0.04 -0.98 8.29 22.28 0.18 -0.79 16 18 C -0.09 -2.12 6.32 22.34 0.14 -1.98 16 19 Cl -0.07 -1.39 28.95 -2.72 -0.08 -1.47 16 20 C -0.06 -1.37 9.60 22.29 0.21 -1.15 16 21 C -0.12 -3.07 6.34 22.44 0.14 -2.93 16 22 Cl -0.06 -1.53 27.63 -2.72 -0.08 -1.61 16 23 C 0.24 6.26 5.37 38.20 0.21 6.46 16 24 N -0.86 -20.69 7.14 -51.27 -0.37 -21.05 16 25 C 0.09 3.33 3.05 86.32 0.26 3.59 16 26 H 0.26 14.28 8.31 -92.71 -0.77 13.50 16 27 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.05 2.94 6.15 -2.39 -0.01 2.93 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.02 0.80 6.78 -2.38 -0.02 0.78 16 32 H 0.09 2.26 8.08 -2.39 -0.02 2.24 16 33 H 0.11 1.99 8.00 -2.39 -0.02 1.97 16 34 H 0.09 1.84 6.71 -2.39 -0.02 1.82 16 35 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 36 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 37 H 0.40 9.53 7.58 -92.70 -0.70 8.83 16 38 H 0.41 9.31 5.07 -92.71 -0.47 8.84 16 39 H 0.06 2.34 5.95 -2.39 -0.01 2.32 16 40 H 0.02 0.80 6.04 -2.39 -0.01 0.79 16 Total: -1.00 -60.31 336.35 0.22 -60.09 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -0.08 Total: 21.46 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 2.93 Total: -29.16 kcal Atomic # 7 Polarization: -90.47 SS G_CDS: -4.50 Total: -94.97 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 17 Polarization: -2.92 SS G_CDS: -0.15 Total: -3.08 kcal Total: -60.31 0.22 -60.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602704616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.745 kcal (2) G-P(sol) polarization free energy of solvation -60.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds