Wall clock time and date at job start Tue Mar 31 2020 14:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47320 * 270.00149 * 3 2 1 5 5 H 1.48500 * 109.47299 * 29.99975 * 3 2 1 6 6 H 1.48507 * 109.47261 * 150.00156 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46921 * 120.63409 * 151.92408 * 9 7 2 11 11 C 1.53197 * 108.89220 * 126.46494 * 10 9 7 12 12 C 1.53041 * 109.31035 * 54.56963 * 11 10 9 13 13 N 1.46902 * 109.45620 * 178.61515 * 12 11 10 14 14 C 1.46903 * 110.99477 * 204.99438 * 13 12 11 15 15 C 1.50700 * 109.47099 * 179.97438 * 14 13 12 16 16 C 1.38242 * 120.00629 * 259.73137 * 15 14 13 17 17 C 1.38225 * 120.04291 * 179.76833 * 16 15 14 18 18 C 1.38248 * 120.03388 * 0.50328 * 17 16 15 19 19 C 1.38299 * 120.00323 * 359.74609 * 18 17 16 20 20 Cl 1.73598 * 120.02250 * 179.97438 * 19 18 17 21 21 C 1.38313 * 119.99565 * 80.00066 * 15 14 13 22 22 Cl 1.73598 * 120.01821 * 0.02562 * 21 15 14 23 23 C 1.53042 * 109.53415 * 298.63246 * 12 11 10 24 24 C 1.46963 * 120.65445 * 331.75076 * 9 7 2 25 25 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.58939 * 6.60799 * 10 9 7 27 27 H 1.09004 * 109.59158 * 246.32678 * 10 9 7 28 28 H 1.09005 * 109.49517 * 174.51677 * 11 10 9 29 29 H 1.08998 * 109.49550 * 294.61371 * 11 10 9 30 30 H 1.08996 * 109.45993 * 58.63917 * 12 11 10 31 31 H 1.00897 * 110.99834 * 81.04561 * 13 12 11 32 32 H 1.09000 * 109.47576 * 299.99904 * 14 13 12 33 33 H 1.09003 * 109.47045 * 60.00356 * 14 13 12 34 34 H 1.08001 * 119.97819 * 0.02562 * 16 15 14 35 35 H 1.07998 * 119.97941 * 180.27365 * 17 16 15 36 36 H 1.08003 * 119.99927 * 179.76916 * 18 17 16 37 37 H 1.09004 * 109.49452 * 181.32235 * 23 12 11 38 38 H 1.08997 * 109.50129 * 301.38075 * 23 12 11 39 39 H 1.09000 * 109.47297 * 113.74148 * 24 9 7 40 40 H 1.09005 * 109.70555 * 353.46012 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8153 -3.6528 -0.2016 11 6 2.0655 -4.6207 0.9593 12 6 0.8079 -4.7057 1.8273 13 7 1.0329 -5.6583 2.9227 14 6 -0.2376 -6.2180 3.4027 15 6 0.0326 -7.1890 4.5231 16 6 0.0381 -8.5487 4.2733 17 6 0.2906 -9.4398 5.2993 18 6 0.5277 -8.9727 6.5788 19 6 0.5175 -7.6131 6.8316 20 17 0.8145 -7.0261 8.4381 21 6 0.2696 -6.7200 5.8025 22 17 0.2553 -5.0131 6.1183 23 6 0.4931 -3.3254 2.4085 24 6 0.2252 -2.3429 1.2642 25 1 -0.4849 0.8401 0.0004 26 1 2.7375 -3.5126 -0.7655 27 1 1.0447 -4.0592 -0.8567 28 1 2.3025 -5.6087 0.5645 29 1 2.8993 -4.2592 1.5611 30 1 -0.0311 -5.0433 1.2189 31 1 1.5461 -5.2273 3.6770 32 1 -0.8756 -5.4122 3.7658 33 1 -0.7379 -6.7372 2.5852 34 1 -0.1509 -8.9147 3.2749 35 1 0.2991 -10.5015 5.1021 36 1 0.7213 -9.6697 7.3808 37 1 -0.3890 -3.3914 3.0454 38 1 1.3414 -2.9764 2.9972 39 1 -0.6770 -2.6412 0.7300 40 1 0.0956 -1.3386 1.6676 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609334958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:53 Heat of formation + Delta-G solvation = 27.028647 kcal Electronic energy + Delta-G solvation = -23129.485620 eV Core-core repulsion = 19609.840598 eV Total energy + Delta-G solvation = -3519.645022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.92248 -38.05144 -36.84023 -36.69379 -35.22830 -32.80433 -31.25343 -30.89493 -29.81277 -29.02340 -25.78633 -24.13341 -23.10174 -22.12541 -21.70245 -21.29603 -19.23827 -17.54926 -16.82378 -16.36902 -15.99032 -15.15586 -14.93309 -14.63236 -14.46385 -14.02269 -13.84747 -13.66443 -13.44764 -13.06499 -12.65882 -12.43068 -12.28803 -12.08255 -11.94118 -11.85027 -11.61336 -11.36167 -11.17630 -11.02864 -10.96104 -10.69138 -10.65225 -10.40120 -10.17601 -10.01020 -9.66330 -9.56372 -9.10886 -8.99285 -8.48040 -8.07704 -6.64019 -5.77018 -3.18936 0.67973 0.76117 1.60453 1.99367 3.12794 3.38469 3.45508 3.48249 4.19835 4.46535 4.51719 4.56691 4.80693 4.84164 4.94639 5.24144 5.31585 5.38998 5.45707 5.57929 5.63039 5.66667 5.70474 5.86668 5.94831 6.08689 6.17673 6.28071 6.35027 6.45190 6.57076 6.63575 6.68005 6.84409 7.02716 7.30700 7.35343 7.56301 7.67385 7.81598 8.47541 9.23684 9.87554 10.44466 11.31645 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020907 B = 0.002872 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.931689 B = 9748.270791 C =10608.881994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.001 3.999 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.251 4.251 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.145 3.855 11 C -0.117 4.117 12 C 0.095 3.905 13 N -0.681 5.681 14 C 0.091 3.909 15 C -0.053 4.053 16 C -0.087 4.087 17 C -0.104 4.104 18 C -0.106 4.106 19 C -0.031 4.031 20 Cl -0.053 7.053 21 C -0.031 4.031 22 Cl -0.042 7.042 23 C -0.166 4.166 24 C 0.176 3.824 25 H 0.253 0.747 26 H 0.054 0.946 27 H 0.016 0.984 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.340 0.660 32 H 0.050 0.950 33 H 0.086 0.914 34 H 0.140 0.860 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.044 0.956 38 H 0.055 0.945 39 H 0.016 0.984 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.380 -19.881 13.594 24.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.380 4.380 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.019 3.981 11 C -0.157 4.157 12 C -0.014 4.014 13 N -0.311 5.311 14 C -0.038 4.038 15 C -0.054 4.054 16 C -0.106 4.106 17 C -0.122 4.122 18 C -0.125 4.125 19 C -0.059 4.059 20 Cl -0.024 7.024 21 C -0.059 4.059 22 Cl -0.012 7.012 23 C -0.207 4.207 24 C 0.049 3.951 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.034 0.966 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.158 0.842 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.157 0.843 35 H 0.156 0.844 36 H 0.157 0.843 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -1.332 -20.037 13.323 24.099 hybrid contribution 0.040 1.834 0.791 1.998 sum -1.292 -18.203 14.113 23.070 Atomic orbital electron populations 1.70031 1.05262 1.25416 1.54123 1.25038 0.95280 0.98383 1.01013 0.86323 0.79192 0.83717 0.77706 1.21395 1.21608 1.20493 1.19179 0.92509 0.84844 1.41503 0.91751 1.44053 1.35832 1.01633 1.50012 1.20915 0.97600 0.86764 0.92866 1.21983 0.96674 0.99037 0.97978 1.21539 0.98498 0.89767 0.91548 1.60867 1.17773 1.39337 1.13131 1.20958 0.93060 0.95469 0.94304 1.19808 0.98126 0.95241 0.92249 1.21169 0.97978 0.91438 1.00008 1.21217 0.98629 1.00506 0.91883 1.21023 1.00615 0.92588 0.98242 1.20766 1.05174 0.93482 0.86444 1.98391 1.94194 1.88764 1.21080 1.20787 1.05280 0.86074 0.93762 1.98419 1.96573 1.10605 1.95640 1.22842 1.00021 0.97408 1.00456 1.20678 0.88645 0.97963 0.87788 0.93709 0.92734 0.96590 0.92545 0.92523 0.91153 0.84217 0.93186 0.89586 0.84253 0.84434 0.84252 0.93701 0.92611 0.96552 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 11.20 55.49 0.62 -25.79 16 2 C 0.00 0.03 4.92 -17.43 -0.09 -0.05 16 3 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 4 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.25 -6.94 9.58 -15.06 -0.14 -7.09 16 8 H 0.06 1.75 7.88 -52.49 -0.41 1.34 16 9 N -0.59 -14.92 3.00 -172.29 -0.52 -15.44 16 10 C 0.15 3.06 6.51 -3.71 -0.02 3.04 16 11 C -0.12 -2.06 5.69 -26.61 -0.15 -2.22 16 12 C 0.10 1.59 2.43 -67.67 -0.16 1.42 16 13 N -0.68 -9.65 6.24 -107.94 -0.67 -10.32 16 14 C 0.09 1.11 5.05 -4.97 -0.03 1.08 16 15 C -0.05 -0.58 5.40 -104.59 -0.56 -1.14 16 16 C -0.09 -0.76 9.67 -39.58 -0.38 -1.14 16 17 C -0.10 -0.76 10.04 -39.58 -0.40 -1.16 16 18 C -0.11 -0.86 9.83 -39.56 -0.39 -1.25 16 19 C -0.03 -0.32 6.32 -39.47 -0.25 -0.57 16 20 Cl -0.05 -0.54 27.96 -51.86 -1.45 -1.99 16 21 C -0.03 -0.36 6.31 -39.46 -0.25 -0.61 16 22 Cl -0.04 -0.52 25.77 -51.86 -1.34 -1.86 16 23 C -0.17 -3.17 5.33 -26.61 -0.14 -3.31 16 24 C 0.18 4.20 5.30 -3.69 -0.02 4.18 16 25 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 26 H 0.05 1.13 7.93 -51.93 -0.41 0.72 16 27 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.19 7.80 -51.93 -0.40 0.78 16 31 H 0.34 5.01 7.69 -39.29 -0.30 4.71 16 32 H 0.05 0.65 6.62 -51.93 -0.34 0.31 16 33 H 0.09 0.96 7.91 -51.93 -0.41 0.54 16 34 H 0.14 0.98 8.03 -52.49 -0.42 0.56 16 35 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 36 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 37 H 0.04 0.79 7.42 -51.93 -0.39 0.41 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.09 2.31 6.07 -51.93 -0.32 1.99 16 LS Contribution 349.97 15.07 5.27 5.27 Total: -1.00 -29.52 349.97 -11.60 -41.12 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.50 Total: 0.97 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -2.99 Total: -8.82 kcal Atomic # 7 Polarization: -50.98 SS G_CDS: -0.57 Total: -51.55 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -2.79 Total: -3.85 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.52 -11.60 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.153 kcal (2) G-P(sol) polarization free energy of solvation -29.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds