Wall clock time and date at job start Tue Mar 31 2020 14:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86795 * 120.00323 * 2 1 4 4 H 1.48499 * 109.47320 * 270.00149 * 3 2 1 5 5 H 1.48500 * 109.47299 * 29.99975 * 3 2 1 6 6 H 1.48507 * 109.47261 * 150.00156 * 3 2 1 7 7 C 1.38810 * 119.99689 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00151 * 163.17280 * 7 2 1 9 9 N 1.36934 * 120.00385 * 343.17004 * 7 2 1 10 10 C 1.46921 * 120.63409 * 151.92408 * 9 7 2 11 11 C 1.53197 * 108.89220 * 126.46494 * 10 9 7 12 12 C 1.53041 * 109.31035 * 54.56963 * 11 10 9 13 13 N 1.46902 * 109.45620 * 178.61515 * 12 11 10 14 14 C 1.46903 * 110.99477 * 204.99438 * 13 12 11 15 15 C 1.50700 * 109.47099 * 179.97438 * 14 13 12 16 16 C 1.38242 * 120.00629 * 259.73137 * 15 14 13 17 17 C 1.38225 * 120.04291 * 179.76833 * 16 15 14 18 18 C 1.38248 * 120.03388 * 0.50328 * 17 16 15 19 19 C 1.38299 * 120.00323 * 359.74609 * 18 17 16 20 20 Cl 1.73598 * 120.02250 * 179.97438 * 19 18 17 21 21 C 1.38313 * 119.99565 * 80.00066 * 15 14 13 22 22 Cl 1.73598 * 120.01821 * 0.02562 * 21 15 14 23 23 C 1.53042 * 109.53415 * 298.63246 * 12 11 10 24 24 C 1.46963 * 120.65445 * 331.75076 * 9 7 2 25 25 H 0.97000 * 119.99637 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.58939 * 6.60799 * 10 9 7 27 27 H 1.09004 * 109.59158 * 246.32678 * 10 9 7 28 28 H 1.09005 * 109.49517 * 174.51677 * 11 10 9 29 29 H 1.08998 * 109.49550 * 294.61371 * 11 10 9 30 30 H 1.08996 * 109.45993 * 58.63917 * 12 11 10 31 31 H 1.00897 * 110.99834 * 81.04561 * 13 12 11 32 32 H 1.09000 * 109.47576 * 299.99904 * 14 13 12 33 33 H 1.09003 * 109.47045 * 60.00356 * 14 13 12 34 34 H 1.08001 * 119.97819 * 0.02562 * 16 15 14 35 35 H 1.07998 * 119.97941 * 180.27365 * 17 16 15 36 36 H 1.08003 * 119.99927 * 179.76916 * 18 17 16 37 37 H 1.09004 * 109.49452 * 181.32235 * 23 12 11 38 38 H 1.08997 * 109.50129 * 301.38075 * 23 12 11 39 39 H 1.09000 * 109.47297 * 113.74148 * 24 9 7 40 40 H 1.09005 * 109.70555 * 353.46012 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4978 2.0464 -1.4000 5 1 1.4478 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0555 -1.2222 -0.2713 9 7 1.3695 -2.3628 0.3423 10 6 1.8153 -3.6528 -0.2016 11 6 2.0655 -4.6207 0.9593 12 6 0.8079 -4.7057 1.8273 13 7 1.0329 -5.6583 2.9227 14 6 -0.2376 -6.2180 3.4027 15 6 0.0326 -7.1890 4.5231 16 6 0.0381 -8.5487 4.2733 17 6 0.2906 -9.4398 5.2993 18 6 0.5277 -8.9727 6.5788 19 6 0.5175 -7.6131 6.8316 20 17 0.8145 -7.0261 8.4381 21 6 0.2696 -6.7200 5.8025 22 17 0.2553 -5.0131 6.1183 23 6 0.4931 -3.3254 2.4085 24 6 0.2252 -2.3429 1.2642 25 1 -0.4849 0.8401 0.0004 26 1 2.7375 -3.5126 -0.7655 27 1 1.0447 -4.0592 -0.8567 28 1 2.3025 -5.6087 0.5645 29 1 2.8993 -4.2592 1.5611 30 1 -0.0311 -5.0433 1.2189 31 1 1.5461 -5.2273 3.6770 32 1 -0.8756 -5.4122 3.7658 33 1 -0.7379 -6.7372 2.5852 34 1 -0.1509 -8.9147 3.2749 35 1 0.2991 -10.5015 5.1021 36 1 0.7213 -9.6697 7.3808 37 1 -0.3890 -3.3914 3.0454 38 1 1.3414 -2.9764 2.9972 39 1 -0.6770 -2.6412 0.7300 40 1 0.0956 -1.3386 1.6676 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609334958.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:52 Heat of formation + Delta-G solvation = 10.950438 kcal Electronic energy + Delta-G solvation = -23130.182824 eV Core-core repulsion = 19609.840598 eV Total energy + Delta-G solvation = -3520.342226 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.68872 -39.53490 -37.64693 -37.54035 -36.65593 -34.35982 -32.67253 -31.58476 -31.51513 -30.48826 -27.19117 -25.66793 -23.84728 -23.73275 -23.03380 -22.43424 -20.85668 -18.84399 -18.20004 -17.17465 -16.95861 -16.70529 -16.19202 -16.06396 -15.35507 -15.30039 -15.11663 -14.95706 -14.82056 -14.74555 -14.04857 -13.82834 -13.34394 -13.15975 -12.99774 -12.91446 -12.76873 -12.67492 -12.57781 -12.42797 -12.34308 -12.13788 -12.00004 -11.91200 -11.83829 -11.78060 -11.37742 -11.18579 -10.56670 -9.89982 -9.72256 -9.32396 -8.67693 -7.88437 -5.33464 -0.02250 0.06174 0.82084 1.22829 1.44568 1.46271 1.55959 2.43634 2.50214 3.21629 3.30437 3.58900 3.70449 3.80948 3.97128 4.07472 4.15613 4.23254 4.31452 4.40646 4.45418 4.55312 4.65620 4.70691 4.77109 4.86472 4.94375 5.00076 5.03594 5.21632 5.23419 5.26527 5.37918 5.38256 5.49828 5.63264 5.66911 5.70258 6.05328 6.35568 6.38597 7.14227 7.86227 8.37721 9.17843 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020907 B = 0.002872 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1338.931689 B = 9748.270791 C =10608.881994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.052 4.052 3 Si 0.965 3.035 4 H -0.282 1.282 5 H -0.293 1.293 6 H -0.272 1.272 7 C -0.263 4.263 8 H 0.066 0.934 9 N -0.611 5.611 10 C 0.141 3.859 11 C -0.104 4.104 12 C 0.107 3.893 13 N -0.671 5.671 14 C 0.092 3.908 15 C -0.068 4.068 16 C -0.086 4.086 17 C -0.092 4.092 18 C -0.101 4.101 19 C -0.046 4.046 20 Cl -0.060 7.060 21 C -0.047 4.047 22 Cl -0.064 7.064 23 C -0.149 4.149 24 C 0.183 3.817 25 H 0.249 0.751 26 H 0.054 0.946 27 H 0.017 0.983 28 H 0.083 0.917 29 H 0.047 0.953 30 H 0.073 0.927 31 H 0.337 0.663 32 H 0.037 0.963 33 H 0.100 0.900 34 H 0.160 0.840 35 H 0.174 0.826 36 H 0.163 0.837 37 H 0.056 0.944 38 H 0.045 0.955 39 H -0.003 1.003 40 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.676 -22.687 13.984 26.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.247 4.247 3 Si 0.793 3.207 4 H -0.209 1.209 5 H -0.219 1.219 6 H -0.197 1.197 7 C -0.393 4.393 8 H 0.083 0.917 9 N -0.335 5.335 10 C 0.016 3.984 11 C -0.143 4.143 12 C -0.003 4.003 13 N -0.300 5.300 14 C -0.036 4.036 15 C -0.069 4.069 16 C -0.104 4.104 17 C -0.110 4.110 18 C -0.120 4.120 19 C -0.074 4.074 20 Cl -0.031 7.031 21 C -0.075 4.075 22 Cl -0.035 7.035 23 C -0.190 4.190 24 C 0.057 3.943 25 H 0.058 0.942 26 H 0.073 0.927 27 H 0.035 0.965 28 H 0.102 0.898 29 H 0.066 0.934 30 H 0.092 0.908 31 H 0.155 0.845 32 H 0.056 0.944 33 H 0.118 0.882 34 H 0.178 0.822 35 H 0.192 0.808 36 H 0.181 0.819 37 H 0.074 0.926 38 H 0.063 0.937 39 H 0.015 0.985 40 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.613 -22.880 13.719 26.685 hybrid contribution -0.196 2.574 0.665 2.666 sum -0.809 -20.306 14.384 24.898 Atomic orbital electron populations 1.70183 1.06648 1.25765 1.55519 1.25790 0.96051 1.01476 1.01361 0.85313 0.78065 0.79640 0.77674 1.20907 1.21943 1.19657 1.19510 0.92805 0.86132 1.40835 0.91674 1.44320 1.35886 1.02519 1.50767 1.21075 0.97374 0.85731 0.94258 1.21807 0.96685 0.99197 0.96632 1.21323 0.98067 0.88658 0.92234 1.60831 1.18896 1.37724 1.12567 1.20982 0.91784 0.95538 0.95309 1.19756 0.99743 0.96012 0.91419 1.21475 0.96968 0.90507 1.01483 1.21634 0.96462 1.02101 0.90830 1.21404 0.99217 0.91869 0.99509 1.20972 1.06039 0.94332 0.86010 1.98386 1.94281 1.89010 1.21429 1.20930 1.06851 0.85126 0.94629 1.98406 1.96798 1.12560 1.95768 1.22618 1.00058 0.97789 0.98532 1.20457 0.87878 0.97185 0.88800 0.94178 0.92721 0.96508 0.89807 0.93380 0.90832 0.84529 0.94449 0.88178 0.82246 0.80827 0.81920 0.92565 0.93668 0.98473 0.93371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.32 11.20 21.65 0.24 -56.08 16 2 C -0.05 -2.94 4.92 84.86 0.42 -2.52 16 3 Si 0.97 45.75 29.59 68.60 2.03 47.78 16 4 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 5 H -0.29 -13.93 7.11 99.48 0.71 -13.22 16 6 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 7 C -0.26 -14.77 9.58 84.03 0.81 -13.96 16 8 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 9 N -0.61 -31.29 3.00 -699.00 -2.10 -33.39 16 10 C 0.14 5.88 6.51 86.37 0.56 6.44 16 11 C -0.10 -3.49 5.69 30.67 0.17 -3.32 16 12 C 0.11 3.42 2.43 44.94 0.11 3.53 16 13 N -0.67 -17.84 6.24 -495.42 -3.09 -20.93 16 14 C 0.09 2.09 5.05 85.56 0.43 2.52 16 15 C -0.07 -1.35 5.40 -19.85 -0.11 -1.45 16 16 C -0.09 -1.19 9.67 22.27 0.22 -0.98 16 17 C -0.09 -0.96 10.04 22.27 0.22 -0.74 16 18 C -0.10 -1.33 9.83 22.29 0.22 -1.11 16 19 C -0.05 -0.88 6.32 22.34 0.14 -0.74 16 20 Cl -0.06 -1.17 27.96 -2.72 -0.08 -1.25 16 21 C -0.05 -1.04 6.31 22.35 0.14 -0.90 16 22 Cl -0.06 -1.63 25.77 -2.72 -0.07 -1.70 16 23 C -0.15 -5.72 5.33 30.67 0.16 -5.56 16 24 C 0.18 9.04 5.30 86.35 0.46 9.49 16 25 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 26 H 0.05 2.23 7.93 -2.39 -0.02 2.21 16 27 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 29 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.07 2.36 7.80 -2.39 -0.02 2.34 16 31 H 0.34 9.55 7.69 -89.70 -0.69 8.86 16 32 H 0.04 0.95 6.62 -2.39 -0.02 0.93 16 33 H 0.10 1.96 7.91 -2.39 -0.02 1.95 16 34 H 0.16 1.55 8.03 -2.91 -0.02 1.53 16 35 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.16 1.33 8.06 -2.91 -0.02 1.30 16 37 H 0.06 2.01 7.42 -2.38 -0.02 1.99 16 38 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 40 H 0.05 2.72 6.07 -2.38 -0.01 2.70 16 Total: -1.00 -65.32 349.97 1.26 -64.06 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: 0.37 Total: 10.79 kcal Atomic # 6 Polarization: -13.25 SS G_CDS: 3.96 Total: -9.29 kcal Atomic # 7 Polarization: -105.45 SS G_CDS: -4.94 Total: -110.39 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.15 Total: -2.95 kcal Total: -65.32 1.26 -64.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334958.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.007 kcal (2) G-P(sol) polarization free energy of solvation -65.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds