Wall clock time and date at job start Tue Mar 31 2020 14:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47191 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46981 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.46794 * 149.99743 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36931 * 120.00220 * 343.08678 * 7 2 1 10 10 C 1.46925 * 120.63201 * 151.82683 * 9 7 2 11 11 C 1.53198 * 108.89335 * 126.29969 * 10 9 7 12 12 C 1.53350 * 109.14641 * 54.57862 * 11 10 9 13 13 N 1.46902 * 109.40933 * 178.68372 * 12 11 10 14 14 C 1.46898 * 111.00116 * 275.12361 * 13 12 11 15 15 C 1.50698 * 109.47417 * 179.97438 * 14 13 12 16 16 C 1.38220 * 119.98344 * 269.72082 * 15 14 13 17 17 C 1.38363 * 120.00754 * 179.76517 * 16 15 14 18 18 Cl 1.73602 * 120.00574 * 180.27913 * 17 16 15 19 19 C 1.38327 * 119.98834 * 0.53443 * 17 16 15 20 20 C 1.38327 * 119.97510 * 359.72193 * 19 17 16 21 21 Cl 1.73598 * 120.01065 * 179.97438 * 20 19 17 22 22 C 1.38220 * 119.98683 * 89.99715 * 15 14 13 23 23 C 1.53044 * 109.60893 * 298.71132 * 12 11 10 24 24 C 1.46925 * 120.62943 * 331.81086 * 9 7 2 25 25 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.58983 * 246.15688 * 10 9 7 27 27 H 1.08993 * 109.58892 * 6.44125 * 10 9 7 28 28 H 1.08996 * 109.49640 * 174.65737 * 11 10 9 29 29 H 1.09000 * 109.49939 * 294.75884 * 11 10 9 30 30 H 1.08996 * 109.43680 * 58.76079 * 12 11 10 31 31 H 1.00901 * 110.99725 * 39.07031 * 13 12 11 32 32 H 1.09004 * 109.46840 * 299.99730 * 14 13 12 33 33 H 1.09003 * 109.47203 * 59.99305 * 14 13 12 34 34 H 1.07994 * 119.99618 * 359.97438 * 16 15 14 35 35 H 1.08004 * 120.01343 * 179.70476 * 19 17 16 36 36 H 1.07999 * 119.99195 * 359.97438 * 22 15 14 37 37 H 1.08996 * 109.49900 * 301.42445 * 23 12 11 38 38 H 1.09005 * 109.49524 * 181.32587 * 23 12 11 39 39 H 1.08998 * 109.58495 * 353.41108 * 24 9 7 40 40 H 1.09000 * 109.58924 * 113.69864 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3460 10 6 1.8140 -3.6529 -0.1980 11 6 2.0708 -4.6187 0.9632 12 6 0.8133 -4.7005 1.8369 13 7 1.0424 -5.6495 2.9346 14 6 0.7626 -7.0267 2.5071 15 6 1.0088 -7.9695 3.6566 16 6 2.2595 -8.5303 3.8343 17 6 2.4875 -9.3922 4.8924 18 17 4.0603 -10.0909 5.1198 19 6 1.4604 -9.7012 5.7660 20 6 0.2075 -9.1438 5.5846 21 17 -1.0822 -9.5314 6.6800 22 6 -0.0177 -8.2775 4.5295 23 6 0.4985 -3.3188 2.4148 24 6 0.2264 -2.3401 1.2681 25 1 -0.4849 0.8400 0.0004 26 1 1.0402 -4.0609 -0.8482 27 1 2.7330 -3.5129 -0.7669 28 1 2.3089 -5.6065 0.5688 29 1 2.9059 -4.2543 1.5615 30 1 -0.0271 -5.0412 1.2320 31 1 1.9815 -5.5663 3.2943 32 1 -0.2773 -7.1043 2.1894 33 1 1.4169 -7.2891 1.6757 34 1 3.0599 -8.2931 3.1491 35 1 1.6367 -10.3776 6.5894 36 1 -0.9958 -7.8421 4.3877 37 1 1.3483 -2.9669 2.9996 38 1 -0.3819 -3.3839 3.0543 39 1 0.0994 -1.3343 1.6686 40 1 -0.6773 -2.6386 0.7368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609334986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:56 Heat of formation + Delta-G solvation = 24.902815 kcal Electronic energy + Delta-G solvation = -22628.047004 eV Core-core repulsion = 19108.309798 eV Total energy + Delta-G solvation = -3519.737205 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.96427 -38.12013 -37.07708 -36.72082 -35.21877 -32.79919 -31.26361 -30.97662 -30.00466 -28.98571 -25.86709 -24.17551 -23.15051 -22.19784 -21.69538 -21.35584 -19.29809 -17.56054 -16.80599 -16.36250 -16.04584 -15.15421 -15.03613 -14.71442 -14.60458 -14.05490 -13.86008 -13.67547 -13.47655 -13.00202 -12.81860 -12.67020 -12.47747 -12.30563 -12.03859 -11.91453 -11.47295 -11.30300 -11.27186 -11.25908 -11.03875 -10.80470 -10.71015 -10.27688 -10.24500 -10.00927 -9.74664 -9.53913 -9.19047 -9.06249 -8.49635 -8.15965 -6.67482 -5.79220 -3.21578 0.65341 0.69865 1.47849 1.93992 3.05944 3.37168 3.44395 3.46765 4.17464 4.48804 4.50153 4.60326 4.64661 4.81214 4.87098 5.13677 5.28093 5.33864 5.40955 5.48036 5.55535 5.64685 5.66859 5.73809 5.83556 6.02440 6.09065 6.19903 6.27918 6.44322 6.54473 6.59692 6.67703 6.82309 6.91955 7.22955 7.35732 7.53475 7.68231 7.79506 8.45405 9.21483 9.84828 10.41483 11.29415 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018852 B = 0.002359 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.893298 B =11866.057704 C =12758.794210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.003 3.997 3 Si 0.901 3.099 4 H -0.287 1.287 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.253 4.253 8 H 0.064 0.936 9 N -0.592 5.592 10 C 0.149 3.851 11 C -0.161 4.161 12 C 0.096 3.904 13 N -0.682 5.682 14 C 0.095 3.905 15 C -0.049 4.049 16 C -0.101 4.101 17 C -0.023 4.023 18 Cl -0.061 7.061 19 C -0.108 4.108 20 C -0.024 4.024 21 Cl -0.060 7.060 22 C -0.083 4.083 23 C -0.124 4.124 24 C 0.171 3.829 25 H 0.254 0.746 26 H 0.016 0.984 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.339 0.661 32 H 0.085 0.915 33 H 0.045 0.955 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.053 0.947 38 H 0.055 0.945 39 H 0.088 0.912 40 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.674 -21.685 10.854 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.214 1.214 5 H -0.215 1.215 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.082 0.918 9 N -0.315 5.315 10 C 0.022 3.978 11 C -0.202 4.202 12 C -0.013 4.013 13 N -0.311 5.311 14 C -0.033 4.033 15 C -0.050 4.050 16 C -0.120 4.120 17 C -0.050 4.050 18 Cl -0.032 7.032 19 C -0.127 4.127 20 C -0.051 4.051 21 Cl -0.031 7.031 22 C -0.103 4.103 23 C -0.164 4.164 24 C 0.044 3.956 25 H 0.064 0.936 26 H 0.034 0.966 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.157 0.843 32 H 0.104 0.896 33 H 0.063 0.937 34 H 0.156 0.844 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.106 0.894 40 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 0.953 -21.528 11.233 24.301 hybrid contribution 1.268 0.513 -0.403 1.426 sum 2.222 -21.015 10.830 23.746 Atomic orbital electron populations 1.70027 1.05266 1.25518 1.53865 1.25041 0.95278 0.98406 1.00880 0.86318 0.79193 0.83697 0.77692 1.21419 1.21520 1.20502 1.19155 0.92487 0.84866 1.41775 0.91844 1.44063 1.35937 1.01412 1.50093 1.20799 0.97535 0.86963 0.92485 1.22758 0.98398 0.98975 1.00036 1.21636 0.96979 0.92817 0.89880 1.60820 1.32647 1.02456 1.35224 1.20936 1.02254 0.87795 0.92363 1.19805 0.92038 0.96373 0.96808 1.21107 0.97687 0.96178 0.97054 1.20681 0.87241 0.99374 0.97746 1.98390 1.24910 1.83179 1.96725 1.20855 0.90466 1.01282 1.00123 1.20737 0.89671 1.00267 0.94434 1.98390 1.48979 1.93213 1.62519 1.21095 1.00725 0.95867 0.92590 1.22178 1.00579 0.93915 0.99754 1.20803 0.88501 0.98298 0.87957 0.93619 0.96620 0.92973 0.93580 0.92180 0.91118 0.84308 0.89640 0.93722 0.84393 0.84052 0.83956 0.92808 0.92655 0.89379 0.96489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.05 11.20 55.49 0.62 -25.43 16 2 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 3 Si 0.90 21.58 29.59 -169.99 -5.03 16.55 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.25 -6.91 9.58 -15.06 -0.14 -7.05 16 8 H 0.06 1.70 7.89 -52.48 -0.41 1.29 16 9 N -0.59 -14.61 2.99 -172.32 -0.52 -15.13 16 10 C 0.15 3.05 6.50 -3.71 -0.02 3.02 16 11 C -0.16 -2.62 5.36 -26.45 -0.14 -2.76 16 12 C 0.10 1.51 2.43 -67.51 -0.16 1.34 16 13 N -0.68 -8.79 6.24 -107.78 -0.67 -9.46 16 14 C 0.10 1.00 5.61 -4.98 -0.03 0.97 16 15 C -0.05 -0.48 5.39 -104.64 -0.56 -1.04 16 16 C -0.10 -0.93 9.48 -39.54 -0.37 -1.31 16 17 C -0.02 -0.22 6.32 -39.50 -0.25 -0.47 16 18 Cl -0.06 -0.53 28.96 -51.86 -1.50 -2.03 16 19 C -0.11 -0.96 9.61 -39.52 -0.38 -1.34 16 20 C -0.02 -0.23 6.32 -39.50 -0.25 -0.48 16 21 Cl -0.06 -0.53 28.96 -51.86 -1.50 -2.03 16 22 C -0.08 -0.80 9.49 -39.54 -0.38 -1.18 16 23 C -0.12 -2.33 5.69 -26.61 -0.15 -2.48 16 24 C 0.17 4.00 5.30 -3.71 -0.02 3.98 16 25 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 26 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 27 H 0.05 1.05 7.93 -51.93 -0.41 0.64 16 28 H 0.05 0.64 7.43 -51.93 -0.39 0.25 16 29 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.07 1.15 7.80 -51.93 -0.40 0.74 16 31 H 0.34 4.28 8.47 -39.29 -0.33 3.94 16 32 H 0.09 0.88 8.00 -51.93 -0.42 0.47 16 33 H 0.04 0.45 7.36 -51.93 -0.38 0.07 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.14 1.05 8.06 -52.48 -0.42 0.63 16 36 H 0.14 1.29 8.06 -52.49 -0.42 0.86 16 37 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.09 2.33 6.06 -51.93 -0.31 2.02 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 355.39 15.07 5.36 5.36 Total: -1.00 -28.34 355.39 -11.78 -40.12 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.58 Total: 0.85 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -2.95 Total: -8.79 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.57 Total: -50.02 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -3.00 Total: -4.07 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -28.34 -11.78 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.020 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds