Wall clock time and date at job start Tue Mar 31 2020 14:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86806 * 120.00043 * 2 1 4 4 H 1.48496 * 109.47191 * 270.00039 * 3 2 1 5 5 H 1.48501 * 109.46981 * 30.00086 * 3 2 1 6 6 H 1.48500 * 109.46794 * 149.99743 * 3 2 1 7 7 C 1.38813 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99890 * 163.07876 * 7 2 1 9 9 N 1.36931 * 120.00220 * 343.08678 * 7 2 1 10 10 C 1.46925 * 120.63201 * 151.82683 * 9 7 2 11 11 C 1.53198 * 108.89335 * 126.29969 * 10 9 7 12 12 C 1.53350 * 109.14641 * 54.57862 * 11 10 9 13 13 N 1.46902 * 109.40933 * 178.68372 * 12 11 10 14 14 C 1.46898 * 111.00116 * 275.12361 * 13 12 11 15 15 C 1.50698 * 109.47417 * 179.97438 * 14 13 12 16 16 C 1.38220 * 119.98344 * 269.72082 * 15 14 13 17 17 C 1.38363 * 120.00754 * 179.76517 * 16 15 14 18 18 Cl 1.73602 * 120.00574 * 180.27913 * 17 16 15 19 19 C 1.38327 * 119.98834 * 0.53443 * 17 16 15 20 20 C 1.38327 * 119.97510 * 359.72193 * 19 17 16 21 21 Cl 1.73598 * 120.01065 * 179.97438 * 20 19 17 22 22 C 1.38220 * 119.98683 * 89.99715 * 15 14 13 23 23 C 1.53044 * 109.60893 * 298.71132 * 12 11 10 24 24 C 1.46925 * 120.62943 * 331.81086 * 9 7 2 25 25 H 0.96996 * 119.99787 * 359.97438 * 1 2 3 26 26 H 1.08997 * 109.58983 * 246.15688 * 10 9 7 27 27 H 1.08993 * 109.58892 * 6.44125 * 10 9 7 28 28 H 1.08996 * 109.49640 * 174.65737 * 11 10 9 29 29 H 1.09000 * 109.49939 * 294.75884 * 11 10 9 30 30 H 1.08996 * 109.43680 * 58.76079 * 12 11 10 31 31 H 1.00901 * 110.99725 * 39.07031 * 13 12 11 32 32 H 1.09004 * 109.46840 * 299.99730 * 14 13 12 33 33 H 1.09003 * 109.47203 * 59.99305 * 14 13 12 34 34 H 1.07994 * 119.99618 * 359.97438 * 16 15 14 35 35 H 1.08004 * 120.01343 * 179.70476 * 19 17 16 36 36 H 1.07999 * 119.99195 * 359.97438 * 22 15 14 37 37 H 1.08996 * 109.49900 * 301.42445 * 23 12 11 38 38 H 1.09005 * 109.49524 * 181.32587 * 23 12 11 39 39 H 1.08998 * 109.58495 * 353.41108 * 24 9 7 40 40 H 1.09000 * 109.58924 * 113.69864 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4401 0.7001 7 6 2.0102 -1.2022 0.0005 8 1 3.0552 -1.2225 -0.2717 9 7 1.3701 -2.3622 0.3460 10 6 1.8140 -3.6529 -0.1980 11 6 2.0708 -4.6187 0.9632 12 6 0.8133 -4.7005 1.8369 13 7 1.0424 -5.6495 2.9346 14 6 0.7626 -7.0267 2.5071 15 6 1.0088 -7.9695 3.6566 16 6 2.2595 -8.5303 3.8343 17 6 2.4875 -9.3922 4.8924 18 17 4.0603 -10.0909 5.1198 19 6 1.4604 -9.7012 5.7660 20 6 0.2075 -9.1438 5.5846 21 17 -1.0822 -9.5314 6.6800 22 6 -0.0177 -8.2775 4.5295 23 6 0.4985 -3.3188 2.4148 24 6 0.2264 -2.3401 1.2681 25 1 -0.4849 0.8400 0.0004 26 1 1.0402 -4.0609 -0.8482 27 1 2.7330 -3.5129 -0.7669 28 1 2.3089 -5.6065 0.5688 29 1 2.9059 -4.2543 1.5615 30 1 -0.0271 -5.0412 1.2320 31 1 1.9815 -5.5663 3.2943 32 1 -0.2773 -7.1043 2.1894 33 1 1.4169 -7.2891 1.6757 34 1 3.0599 -8.2931 3.1491 35 1 1.6367 -10.3776 6.5894 36 1 -0.9958 -7.8421 4.3877 37 1 1.3483 -2.9669 2.9996 38 1 -0.3819 -3.3839 3.0543 39 1 0.0994 -1.3343 1.6686 40 1 -0.6773 -2.6386 0.7368 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609334986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:56 Heat of formation + Delta-G solvation = 10.348238 kcal Electronic energy + Delta-G solvation = -22628.678138 eV Core-core repulsion = 19108.309798 eV Total energy + Delta-G solvation = -3520.368339 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.70506 -39.52202 -37.75722 -37.51368 -36.55138 -34.28747 -32.67149 -31.67396 -31.57432 -30.43622 -27.20676 -25.67436 -23.88451 -23.72703 -23.01006 -22.42160 -20.86145 -18.81774 -18.16658 -17.12892 -16.92541 -16.74697 -16.10549 -16.04407 -15.46492 -15.32060 -15.22518 -14.89591 -14.81207 -14.65335 -13.93464 -13.82396 -13.42752 -13.34938 -13.13958 -13.00427 -12.82296 -12.67869 -12.57242 -12.43224 -12.11401 -11.98741 -11.95594 -11.94981 -11.88044 -11.74745 -11.40464 -11.15527 -10.53441 -9.94843 -9.75757 -9.25192 -8.66757 -7.86898 -5.31908 -0.04419 -0.00905 0.79461 1.25377 1.46443 1.48383 1.57839 2.33662 2.51870 3.23920 3.33140 3.62115 3.72956 3.92522 3.95597 3.99223 4.05696 4.15605 4.20582 4.40900 4.45970 4.53970 4.63982 4.73289 4.77133 4.89905 4.97378 5.01800 5.04826 5.07533 5.17656 5.29217 5.34496 5.37606 5.49761 5.54642 5.66413 5.76715 6.10439 6.40698 6.48538 7.16376 7.88274 8.39216 9.19521 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.018852 B = 0.002359 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1484.893298 B =11866.057704 C =12758.794210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.051 4.051 3 Si 0.965 3.035 4 H -0.284 1.284 5 H -0.292 1.292 6 H -0.271 1.271 7 C -0.263 4.263 8 H 0.065 0.935 9 N -0.611 5.611 10 C 0.143 3.857 11 C -0.145 4.145 12 C 0.109 3.891 13 N -0.680 5.680 14 C 0.099 3.901 15 C -0.053 4.053 16 C -0.100 4.100 17 C -0.030 4.030 18 Cl -0.058 7.058 19 C -0.107 4.107 20 C -0.031 4.031 21 Cl -0.059 7.059 22 C -0.088 4.088 23 C -0.111 4.111 24 C 0.178 3.822 25 H 0.250 0.750 26 H 0.014 0.986 27 H 0.050 0.950 28 H 0.080 0.920 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.344 0.656 32 H 0.088 0.912 33 H 0.057 0.943 34 H 0.149 0.851 35 H 0.154 0.846 36 H 0.146 0.854 37 H 0.046 0.954 38 H 0.064 0.936 39 H 0.051 0.949 40 H -0.004 1.004 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.802 -23.306 11.464 26.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.246 4.246 3 Si 0.793 3.207 4 H -0.211 1.211 5 H -0.219 1.219 6 H -0.196 1.196 7 C -0.394 4.394 8 H 0.082 0.918 9 N -0.335 5.335 10 C 0.017 3.983 11 C -0.186 4.186 12 C -0.001 4.001 13 N -0.310 5.310 14 C -0.029 4.029 15 C -0.055 4.055 16 C -0.119 4.119 17 C -0.057 4.057 18 Cl -0.029 7.029 19 C -0.126 4.126 20 C -0.058 4.058 21 Cl -0.030 7.030 22 C -0.108 4.108 23 C -0.150 4.150 24 C 0.052 3.948 25 H 0.059 0.941 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.162 0.838 32 H 0.107 0.893 33 H 0.075 0.925 34 H 0.167 0.833 35 H 0.171 0.829 36 H 0.163 0.837 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.014 0.986 Dipole moment (debyes) X Y Z Total from point charges 2.101 -23.190 11.851 26.127 hybrid contribution 0.918 0.930 -0.594 1.435 sum 3.019 -22.260 11.258 25.127 Atomic orbital electron populations 1.70179 1.06656 1.25836 1.55400 1.25793 0.96038 1.01490 1.01324 0.85314 0.78102 0.79677 0.77578 1.21105 1.21866 1.19595 1.19488 0.92765 0.86182 1.40935 0.91778 1.44330 1.35995 1.02328 1.50842 1.20981 0.97131 0.86032 0.94147 1.22591 0.98417 0.99316 0.98276 1.21327 0.96722 0.91738 0.90300 1.60661 1.33095 1.03395 1.33878 1.20941 1.02760 0.86253 0.92993 1.19690 0.92311 0.96691 0.96762 1.21238 0.97760 0.95795 0.97118 1.20751 0.87481 0.99548 0.97893 1.98393 1.24642 1.83122 1.96715 1.21026 0.90216 1.01073 1.00292 1.20791 0.89946 1.00483 0.94566 1.98391 1.48937 1.93200 1.62441 1.21200 1.00978 0.95919 0.92668 1.21927 1.00629 0.94740 0.97747 1.20584 0.87666 0.97593 0.88986 0.94116 0.96822 0.93141 0.90196 0.92556 0.91177 0.83783 0.89335 0.92537 0.83301 0.82880 0.83665 0.93563 0.91765 0.93095 0.98609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.55 11.20 21.65 0.24 -55.31 16 2 C -0.05 -2.87 4.92 84.86 0.42 -2.45 16 3 Si 0.97 44.96 29.59 68.60 2.03 46.99 16 4 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 5 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.26 -14.52 9.58 84.03 0.81 -13.72 16 8 H 0.06 3.45 7.89 -2.91 -0.02 3.42 16 9 N -0.61 -30.45 2.99 -699.09 -2.09 -32.55 16 10 C 0.14 5.71 6.50 86.36 0.56 6.27 16 11 C -0.15 -4.38 5.36 30.78 0.16 -4.21 16 12 C 0.11 3.21 2.43 45.05 0.11 3.32 16 13 N -0.68 -15.72 6.24 -494.89 -3.09 -18.81 16 14 C 0.10 1.78 5.61 85.56 0.48 2.26 16 15 C -0.05 -0.90 5.39 -19.87 -0.11 -1.01 16 16 C -0.10 -1.58 9.48 22.30 0.21 -1.37 16 17 C -0.03 -0.48 6.32 22.32 0.14 -0.34 16 18 Cl -0.06 -0.89 28.96 -2.72 -0.08 -0.97 16 19 C -0.11 -1.68 9.61 22.31 0.21 -1.47 16 20 C -0.03 -0.52 6.32 22.32 0.14 -0.38 16 21 Cl -0.06 -0.96 28.96 -2.72 -0.08 -1.04 16 22 C -0.09 -1.53 9.49 22.29 0.21 -1.31 16 23 C -0.11 -4.09 5.69 30.68 0.17 -3.92 16 24 C 0.18 8.54 5.30 86.36 0.46 9.00 16 25 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 26 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 27 H 0.05 1.99 7.93 -2.39 -0.02 1.97 16 28 H 0.08 1.91 7.43 -2.39 -0.02 1.89 16 29 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 2.12 7.80 -2.39 -0.02 2.10 16 31 H 0.34 7.64 8.47 -89.69 -0.76 6.88 16 32 H 0.09 1.58 8.00 -2.38 -0.02 1.56 16 33 H 0.06 0.92 7.36 -2.39 -0.02 0.90 16 34 H 0.15 2.00 8.06 -2.91 -0.02 1.97 16 35 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 36 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 37 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 39 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 40 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 Total: -1.00 -61.45 355.39 1.21 -60.24 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: 0.29 Total: 10.77 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: 3.98 Total: -9.33 kcal Atomic # 7 Polarization: -101.72 SS G_CDS: -4.94 Total: -106.66 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Atomic # 17 Polarization: -1.85 SS G_CDS: -0.16 Total: -2.00 kcal Total: -61.45 1.21 -60.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609334986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.587 kcal (2) G-P(sol) polarization free energy of solvation -61.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds