Wall clock time and date at job start Tue Mar 31 2020 14:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99594 * 2 1 4 4 H 1.48495 * 109.47357 * 270.00032 * 3 2 1 5 5 H 1.48500 * 109.46901 * 30.00452 * 3 2 1 6 6 H 1.48502 * 109.46714 * 149.99906 * 3 2 1 7 7 C 1.38808 * 120.00050 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99428 * 163.07159 * 7 2 1 9 9 N 1.36929 * 120.00274 * 343.07890 * 7 2 1 10 10 C 1.46922 * 120.63132 * 331.84376 * 9 7 2 11 11 C 1.53193 * 108.77906 * 233.58966 * 10 9 7 12 12 C 1.53036 * 109.31252 * 305.36770 * 11 10 9 13 13 N 1.46899 * 109.46056 * 181.38586 * 12 11 10 14 14 C 1.46906 * 110.99976 * 154.96999 * 13 12 11 15 15 C 1.50699 * 109.46770 * 179.97438 * 14 13 12 16 16 C 1.38329 * 120.01339 * 90.00530 * 15 14 13 17 17 Cl 1.73601 * 120.00785 * 359.69458 * 16 15 14 18 18 C 1.38363 * 119.98818 * 179.97438 * 16 15 14 19 19 C 1.38219 * 120.01068 * 359.97438 * 18 16 15 20 20 C 1.38219 * 120.03042 * 0.02562 * 19 18 16 21 21 C 1.38330 * 120.01503 * 269.97380 * 15 14 13 22 22 Cl 1.73601 * 120.00532 * 0.02562 * 21 15 14 23 23 C 1.53037 * 109.53162 * 61.36817 * 12 11 10 24 24 C 1.46930 * 120.63524 * 151.82645 * 9 7 2 25 25 H 0.96992 * 120.00212 * 359.97438 * 1 2 3 26 26 H 1.09001 * 109.58996 * 113.80307 * 10 9 7 27 27 H 1.09006 * 109.70263 * 353.44300 * 10 9 7 28 28 H 1.08997 * 109.50366 * 185.41032 * 11 10 9 29 29 H 1.09003 * 109.52144 * 65.32883 * 11 10 9 30 30 H 1.09005 * 109.45635 * 301.35294 * 12 11 10 31 31 H 1.00902 * 110.99925 * 278.91479 * 13 12 11 32 32 H 1.09002 * 109.47070 * 60.00127 * 14 13 12 33 33 H 1.08998 * 109.47180 * 299.99802 * 14 13 12 34 34 H 1.07996 * 119.99566 * 179.97438 * 18 16 15 35 35 H 1.08001 * 119.98473 * 180.02562 * 19 18 16 36 36 H 1.08001 * 119.99405 * 179.97438 * 20 19 18 37 37 H 1.08995 * 109.49637 * 58.57828 * 23 12 11 38 38 H 1.09003 * 109.50249 * 178.68344 * 23 12 11 39 39 H 1.09000 * 109.58297 * 246.20206 * 24 9 7 40 40 H 1.09007 * 109.57944 * 6.47462 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4475 2.6526 0.7001 6 1 3.5477 1.4402 0.7001 7 6 2.0103 -1.2021 -0.0005 8 1 3.0553 -1.2221 -0.2729 9 7 1.3702 -2.3625 0.3441 10 6 0.2262 -2.3410 1.2657 11 6 0.4975 -3.3211 2.4114 12 6 0.8122 -4.7022 1.8322 13 7 1.0404 -5.6525 2.9290 14 6 0.7596 -7.0291 2.4998 15 6 1.0049 -7.9732 3.6485 16 6 -0.0226 -8.2821 4.5217 17 17 -1.5929 -7.5761 4.2992 18 6 0.2030 -9.1494 5.5759 19 6 1.4546 -9.7075 5.7562 20 6 2.4816 -9.3993 4.8841 21 6 2.2573 -8.5318 3.8298 22 17 3.5473 -8.1449 2.7344 23 6 2.0678 -4.6178 0.9613 24 6 1.8140 -3.6527 -0.2010 25 1 -0.4850 0.8400 0.0004 26 1 -0.6769 -2.6412 0.7343 27 1 0.0968 -1.3360 1.6675 28 1 -0.3830 -3.3866 3.0505 29 1 1.3470 -2.9702 2.9974 30 1 -0.0279 -5.0419 1.2264 31 1 1.9794 -5.5705 3.2890 32 1 1.4142 -7.2911 1.6685 33 1 -0.2801 -7.1056 2.1817 34 1 -0.5989 -9.3904 6.2579 35 1 1.6301 -10.3848 6.5790 36 1 3.4595 -9.8354 5.0258 37 1 2.9024 -4.2543 1.5606 38 1 2.3049 -5.6063 0.5679 39 1 1.0404 -4.0598 -0.8522 40 1 2.7334 -3.5123 -0.7696 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609335038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:47:23 Heat of formation + Delta-G solvation = 29.357810 kcal Electronic energy + Delta-G solvation = -23271.801724 eV Core-core repulsion = 19752.257701 eV Total energy + Delta-G solvation = -3519.544022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.080 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.93522 -38.00266 -36.93331 -36.42097 -35.27402 -32.80371 -31.19912 -30.90645 -29.91918 -28.88162 -25.74604 -24.10748 -23.12274 -22.11619 -21.64793 -21.26561 -19.21684 -17.58675 -16.79907 -16.44064 -15.84535 -15.14828 -14.89121 -14.59354 -14.54788 -13.82806 -13.78257 -13.62442 -13.40584 -12.91828 -12.82586 -12.54082 -12.43598 -12.25477 -11.94893 -11.79661 -11.36076 -11.33143 -11.09095 -11.04870 -10.84886 -10.71786 -10.66712 -10.20009 -10.17909 -9.94408 -9.67333 -9.47130 -9.09282 -8.99295 -8.44502 -8.02973 -6.61904 -5.74508 -3.16598 0.68536 0.74972 1.65707 2.09822 3.10965 3.40008 3.46973 3.49629 4.24328 4.47059 4.53122 4.53867 4.68630 4.87700 5.06133 5.18900 5.32435 5.37447 5.46713 5.56741 5.71482 5.72666 5.73633 5.85495 5.92066 5.96549 6.14949 6.22189 6.36450 6.54504 6.63361 6.67507 6.75391 6.90696 6.99604 7.33806 7.43008 7.64496 7.74198 7.83977 8.50162 9.26319 9.89860 10.46945 11.34035 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019532 B = 0.003063 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.175118 B = 9139.567687 C =10079.691473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.002 3.998 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.252 4.252 8 H 0.063 0.937 9 N -0.592 5.592 10 C 0.172 3.828 11 C -0.123 4.123 12 C 0.098 3.902 13 N -0.674 5.674 14 C 0.087 3.913 15 C -0.061 4.061 16 C -0.007 4.007 17 Cl -0.045 7.045 18 C -0.110 4.110 19 C -0.100 4.100 20 C -0.109 4.109 21 C -0.024 4.024 22 Cl -0.054 7.054 23 C -0.159 4.159 24 C 0.150 3.850 25 H 0.253 0.747 26 H 0.016 0.984 27 H 0.088 0.912 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.337 0.663 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.138 0.862 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.016 0.984 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.732 -22.197 11.450 25.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.196 4.196 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.381 4.381 8 H 0.081 0.919 9 N -0.315 5.315 10 C 0.046 3.954 11 C -0.163 4.163 12 C -0.011 4.011 13 N -0.303 5.303 14 C -0.042 4.042 15 C -0.063 4.063 16 C -0.035 4.035 17 Cl -0.015 7.015 18 C -0.129 4.129 19 C -0.118 4.118 20 C -0.128 4.128 21 C -0.051 4.051 22 Cl -0.025 7.025 23 C -0.200 4.200 24 C 0.023 3.977 25 H 0.063 0.937 26 H 0.034 0.966 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.156 0.844 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.033 0.967 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 0.957 -21.835 11.584 24.736 hybrid contribution 1.224 0.701 -0.652 1.554 sum 2.181 -21.134 10.931 23.893 Atomic orbital electron populations 1.70033 1.05238 1.25434 1.53993 1.25034 0.95269 0.98351 1.00990 0.86324 0.79190 0.83771 0.77651 1.21467 1.21551 1.20525 1.19156 0.92472 0.84880 1.41617 0.91888 1.44063 1.35920 1.01421 1.50094 1.20789 0.88457 0.98221 0.87984 1.22167 1.00525 0.93938 0.99697 1.21536 0.96893 0.92719 0.89932 1.60815 1.32374 1.02064 1.35061 1.21008 1.02680 0.88024 0.92439 1.19613 0.90800 0.98031 0.97819 1.20675 0.87947 0.97971 0.96894 1.98403 1.23781 1.82863 1.96498 1.21177 0.98258 0.96520 0.96903 1.21042 0.91826 0.99753 0.99204 1.21127 1.00511 0.97471 0.93678 1.20765 0.89414 1.00201 0.94741 1.98401 1.48313 1.93282 1.62466 1.22680 0.98428 0.98903 0.99945 1.20806 0.97452 0.86947 0.92517 0.93675 0.96573 0.89429 0.92684 0.92892 0.91236 0.84514 0.93286 0.89342 0.84376 0.84265 0.84440 0.92260 0.93643 0.96662 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 11.19 55.49 0.62 -25.90 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.96 29.59 -169.99 -5.03 16.93 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 7 C -0.25 -7.02 9.58 -15.06 -0.14 -7.16 16 8 H 0.06 1.73 7.89 -52.48 -0.41 1.32 16 9 N -0.59 -15.07 2.99 -172.31 -0.52 -15.59 16 10 C 0.17 4.17 5.30 -3.71 -0.02 4.15 16 11 C -0.12 -2.44 5.69 -26.61 -0.15 -2.59 16 12 C 0.10 1.68 2.43 -67.68 -0.16 1.52 16 13 N -0.67 -9.85 6.24 -107.95 -0.67 -10.52 16 14 C 0.09 1.12 4.81 -4.97 -0.02 1.10 16 15 C -0.06 -0.70 5.40 -104.56 -0.56 -1.26 16 16 C -0.01 -0.08 6.31 -39.50 -0.25 -0.33 16 17 Cl -0.04 -0.51 27.30 -51.86 -1.42 -1.93 16 18 C -0.11 -0.92 9.83 -39.54 -0.39 -1.31 16 19 C -0.10 -0.71 10.04 -39.60 -0.40 -1.11 16 20 C -0.11 -0.89 9.83 -39.54 -0.39 -1.28 16 21 C -0.02 -0.25 6.31 -39.50 -0.25 -0.50 16 22 Cl -0.05 -0.58 27.30 -51.86 -1.42 -1.99 16 23 C -0.16 -2.79 5.33 -26.61 -0.14 -2.94 16 24 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 25 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.09 2.38 6.07 -51.93 -0.31 2.07 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.07 1.24 7.80 -51.93 -0.40 0.83 16 31 H 0.34 4.92 8.47 -39.29 -0.33 4.59 16 32 H 0.05 0.63 6.17 -51.93 -0.32 0.31 16 33 H 0.09 1.17 6.83 -51.93 -0.35 0.82 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.43 16 37 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 38 H 0.04 0.71 7.42 -51.93 -0.39 0.33 16 39 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 40 H 0.05 1.09 7.93 -51.93 -0.41 0.67 16 LS Contribution 350.00 15.07 5.27 5.27 Total: -1.00 -29.58 350.00 -11.60 -41.18 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -5.46 Total: 1.09 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -2.99 Total: -8.56 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: -0.57 Total: -52.01 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -2.83 Total: -3.92 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.58 -11.60 -41.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609335038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.541 kcal (2) G-P(sol) polarization free energy of solvation -29.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds